View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8109_low_10 (Length: 456)
Name: NF8109_low_10
Description: NF8109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8109_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 38 - 428
Target Start/End: Complemental strand, 51911598 - 51911211
Alignment:
| Q |
38 |
acaagaaaatatctataatctttgaaattagacataccattgtgacattcctcaaagctaagctaaccatagacttcaaataannnnnnnnnnnnnnnna |
137 |
Q |
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| T |
51911598 |
acaagaaaatatctataatctttgaaattagacataccattgtgacattcctcaaagctaagctaaccatagacttcaaataatattattttttttt--a |
51911501 |
T |
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| Q |
138 |
ggaggggactatttccttgagtttgatgcatatataacatctttcttttcatacatgtgtaaactgattacatagttttgcatcacacagatatcaataa |
237 |
Q |
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| T |
51911500 |
ggaggggactatttccttgagtttgatgcatatataacatctttcttttcatacatgtgtaaacagattacatagttttgcatcacacagatatcaataa |
51911401 |
T |
|
| Q |
238 |
ttgaaaaattcctacccacataatttagaattcttgttgaagtgtaaaatttgtttataaggtgtcagtttagtgttaagagtttaattttgtaccctcg |
337 |
Q |
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| T |
51911400 |
ttgaaaaattcctacccacataatttagaattcttgttgaagtgtaaaatttgtttatgaggtgtcagtttagtgttaagagtttaattttgtaccctcg |
51911301 |
T |
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| Q |
338 |
agggacaaagttcaaatccccttaaagacaattgtaaaatattcattaatgtcactcgaattaataataattttcgctttcccaatatatt |
428 |
Q |
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| T |
51911300 |
a-ggacaaagttcaaatccccttaaagacaattgtaaaatattcattaatgtcactcgaattaataataattttcgctttcccaatatatt |
51911211 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 293 - 330
Target Start/End: Original strand, 42039639 - 42039676
Alignment:
| Q |
293 |
tataaggtgtcagtttagtgttaagagtttaattttgt |
330 |
Q |
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| T |
42039639 |
tataaggtgtcagtttagtgttaagattttaatcttgt |
42039676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 368 - 412
Target Start/End: Complemental strand, 33129861 - 33129817
Alignment:
| Q |
368 |
attgtaaaatattcattaatgtcactcgaattaataataattttc |
412 |
Q |
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| T |
33129861 |
attgtaaaataatcattaatttcactgtaattaataataattttc |
33129817 |
T |
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