View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8109_low_11 (Length: 446)

Name: NF8109_low_11
Description: NF8109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8109_low_11
NF8109_low_11
[»] chr1 (16 HSPs)
chr1 (222-393)||(32971601-32971772)
chr1 (44-113)||(29359851-29359920)
chr1 (44-114)||(34817939-34818009)
chr1 (44-103)||(29877415-29877474)
chr1 (45-103)||(49020301-49020359)
chr1 (60-114)||(49570103-49570157)
chr1 (177-225)||(16263421-16263469)
chr1 (177-225)||(46281432-46281480)
chr1 (44-103)||(30519519-30519578)
chr1 (177-228)||(49569989-49570040)
chr1 (77-114)||(36750412-36750449)
chr1 (177-218)||(44723363-44723404)
chr1 (177-221)||(740983-741027)
chr1 (77-113)||(23665653-23665689)
chr1 (183-231)||(38019537-38019585)
chr1 (177-225)||(49020431-49020479)
[»] chr3 (16 HSPs)
chr3 (44-114)||(36755945-36756015)
chr3 (44-114)||(33796373-33796443)
chr3 (44-114)||(1436923-1436993)
chr3 (44-114)||(51698965-51699035)
chr3 (44-114)||(54099251-54099321)
chr3 (43-114)||(47742389-47742460)
chr3 (177-222)||(51137063-51137108)
chr3 (177-221)||(49021711-49021755)
chr3 (44-105)||(29781013-29781074)
chr3 (177-222)||(48352995-48353040)
chr3 (77-114)||(49021818-49021855)
chr3 (34-107)||(52485586-52485659)
chr3 (77-114)||(52714840-52714877)
chr3 (177-221)||(37894270-37894314)
chr3 (179-223)||(52714731-52714775)
chr3 (177-221)||(54099384-54099428)
[»] chr8 (15 HSPs)
chr8 (44-114)||(35067267-35067337)
chr8 (44-113)||(41639692-41639761)
chr8 (44-103)||(39453211-39453270)
chr8 (44-103)||(45405649-45405708)
chr8 (44-107)||(6440195-6440258)
chr8 (177-230)||(42620004-42620057)
chr8 (177-221)||(5574266-5574310)
chr8 (44-107)||(5574369-5574432)
chr8 (76-114)||(42619907-42619945)
chr8 (77-114)||(6972261-6972298)
chr8 (177-222)||(25830273-25830318)
chr8 (177-221)||(67188-67232)
chr8 (182-222)||(10344323-10344363)
chr8 (177-221)||(13970919-13970963)
chr8 (177-221)||(43285990-43286034)
[»] chr5 (15 HSPs)
chr5 (44-114)||(16690606-16690676)
chr5 (44-114)||(38493732-38493802)
chr5 (44-107)||(22098369-22098432)
chr5 (44-114)||(884548-884618)
chr5 (58-107)||(26686992-26687041)
chr5 (58-107)||(26956723-26956772)
chr5 (45-106)||(34940748-34940809)
chr5 (177-224)||(22098252-22098299)
chr5 (44-114)||(9168062-9168131)
chr5 (179-221)||(38493625-38493666)
chr5 (177-226)||(14321982-14322031)
chr5 (58-107)||(29687191-29687240)
chr5 (177-221)||(4088443-4088487)
chr5 (177-221)||(10659100-10659144)
chr5 (177-225)||(40829410-40829458)
[»] chr2 (15 HSPs)
chr2 (44-114)||(19843591-19843661)
chr2 (44-117)||(7084609-7084682)
chr2 (44-113)||(26290745-26290814)
chr2 (44-107)||(39309523-39309586)
chr2 (44-107)||(43658606-43658669)
chr2 (44-114)||(21738512-21738582)
chr2 (77-117)||(33616571-33616611)
chr2 (44-103)||(12070965-12071024)
chr2 (77-114)||(6336357-6336394)
chr2 (177-221)||(6336252-6336296)
chr2 (35-103)||(14328499-14328567)
chr2 (177-221)||(19843484-19843528)
chr2 (179-223)||(21738645-21738689)
chr2 (177-221)||(24766152-24766196)
chr2 (77-117)||(45259216-45259256)
[»] scaffold0662 (2 HSPs)
scaffold0662 (44-114)||(1251-1321)
scaffold0662 (177-221)||(1146-1190)
[»] chr4 (13 HSPs)
chr4 (179-221)||(34757928-34757970)
chr4 (179-221)||(34759202-34759244)
chr4 (44-114)||(47015112-47015182)
chr4 (44-103)||(16019594-16019653)
chr4 (44-103)||(34757803-34757862)
chr4 (44-103)||(34759077-34759136)
chr4 (44-103)||(15522472-15522531)
chr4 (177-221)||(20760255-20760299)
chr4 (177-221)||(20766646-20766690)
chr4 (177-221)||(37514159-37514203)
chr4 (177-221)||(42815404-42815448)
chr4 (55-107)||(46665100-46665152)
chr4 (177-221)||(47015007-47015051)
[»] chr7 (11 HSPs)
chr7 (44-103)||(35822869-35822928)
chr7 (76-117)||(47012496-47012537)
chr7 (44-103)||(41430046-41430105)
chr7 (44-103)||(42584920-42584979)
chr7 (177-230)||(23844956-23845008)
chr7 (77-114)||(40854582-40854619)
chr7 (177-222)||(40854682-40854727)
chr7 (46-103)||(44496699-44496756)
chr7 (177-225)||(22638911-22638959)
chr7 (177-221)||(47012597-47012641)
chr7 (77-117)||(47954029-47954069)
[»] chr6 (2 HSPs)
chr6 (44-117)||(33651124-33651197)
chr6 (177-226)||(33651015-33651064)
[»] scaffold0016 (1 HSPs)
scaffold0016 (181-221)||(204476-204516)


Alignment Details
Target: chr1 (Bit Score: 160; Significance: 4e-85; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 222 - 393
Target Start/End: Original strand, 32971601 - 32971772
Alignment:
Q  222 atttataaatgtgtagtatagatacataacattaaatttaagtagtagagagaagagtgtagaactctcggcttttaagtgtgtaaaattatctcacaat 321  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  32971601 atttataaatgtgtggtatagatacataacattaaatttaagtagtagagagaagagtgtagaactctcggcttttaagtgtgtaaaattatctcataat 32971700  T
Q  322 gtatgtataactgtcctttggaccctatgaatgaaggaaagcttatcattcgtaaactagacaagtaaaagg 393  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32971701 gtatgtataactctcctttggaccctatgaatgaaggaaagcttatcattcgtaaactagacaagtaaaagg 32971772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 44 - 113
Target Start/End: Complemental strand, 29359920 - 29359851
Alignment:
Q  44 gttatttgaagatcaatttgattgataatcacattgacaactatatttttacaaagaaaagtatctgttg 113  Q
    |||||||||| |||||||||||||| || |||||||||||| ||||||||| |||||||||||| |||||    
T  29359920 gttatttgaacatcaatttgattgacaaccacattgacaaccatatttttataaagaaaagtatgtgttg 29359851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 44 - 114
Target Start/End: Original strand, 34817939 - 34818009
Alignment:
Q  44 gttatttgaagatcaatttgattgataatcacattgacaactatatttttacaaagaaaagtatctgttgg 114  Q
    |||||||||| ||||||||  |||| ||||| ||||||||| |||||||||||||||||| ||| ||||||    
T  34817939 gttatttgaacatcaatttagttgacaatcatattgacaaccatatttttacaaagaaaaatatgtgttgg 34818009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 44 - 103
Target Start/End: Complemental strand, 29877474 - 29877415
Alignment:
Q  44 gttatttgaagatcaatttgattgataatcacattgacaactatatttttacaaagaaaa 103  Q
    |||||||||| |||||||| ||||| ||||| || |||||| ||||||||||||||||||    
T  29877474 gttatttgaacatcaattttattgacaatcatatggacaaccatatttttacaaagaaaa 29877415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 45 - 103
Target Start/End: Original strand, 49020301 - 49020359
Alignment:
Q  45 ttatttgaagatcaatttgattgataatcacattgacaactatatttttacaaagaaaa 103  Q
    ||||||||| ||||||||| |||| || || ||||||||| ||||||||||||||||||    
T  49020301 ttatttgaacatcaatttggttgacaaccaaattgacaaccatatttttacaaagaaaa 49020359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 60 - 114
Target Start/End: Complemental strand, 49570157 - 49570103
Alignment:
Q  60 tttgattgataatcacattgacaactatatttttacaaagaaaagtatctgttgg 114  Q
    |||| |||| ||||||||||||||| ||||||||| |||||||||||| ||||||    
T  49570157 tttggttgacaatcacattgacaaccatatttttataaagaaaagtatgtgttgg 49570103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 177 - 225
Target Start/End: Complemental strand, 16263469 - 16263421
Alignment:
Q  177 tgtcacaaaagttattagaaaatatatgtacaaatatcatttctcattt 225  Q
    ||||| ||||||| ||||||||||  |||||||||||||||||||||||    
T  16263469 tgtcataaaagttgttagaaaataattgtacaaatatcatttctcattt 16263421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 177 - 225
Target Start/End: Complemental strand, 46281480 - 46281432
Alignment:
Q  177 tgtcacaaaagttattagaaaatatatgtacaaatatcatttctcattt 225  Q
    |||||||||| |||||| ||||||  |||||||||||||||||||||||    
T  46281480 tgtcacaaaaattattacaaaatagttgtacaaatatcatttctcattt 46281432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 44 - 103
Target Start/End: Original strand, 30519519 - 30519578
Alignment:
Q  44 gttatttgaagatcaatttgattgataatcacattgacaactatatttttacaaagaaaa 103  Q
    |||||||||| |||||| ||||||| || ||||| |||||| || |||||||||||||||    
T  30519519 gttatttgaacatcaatgtgattgacaaccacatggacaaccatctttttacaaagaaaa 30519578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 177 - 228
Target Start/End: Complemental strand, 49570040 - 49569989
Alignment:
Q  177 tgtcacaaaagttattagaaaatatatgtacaaatatcatttctcatttata 228  Q
    ||||||||||||| |||| ||||  |||||||||||||||||||||| ||||    
T  49570040 tgtcacaaaagttgttaggaaatggatgtacaaatatcatttctcatatata 49569989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 77 - 114
Target Start/End: Original strand, 36750412 - 36750449
Alignment:
Q  77 ttgacaactatatttttacaaagaaaagtatctgttgg 114  Q
    |||||||| |||||||||||||||||||||| ||||||    
T  36750412 ttgacaaccatatttttacaaagaaaagtatgtgttgg 36750449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 177 - 218
Target Start/End: Complemental strand, 44723404 - 44723363
Alignment:
Q  177 tgtcacaaaagttattagaaaatatatgtacaaatatcattt 218  Q
    |||||||||| |||||| |||||| |||||||||||||||||    
T  44723404 tgtcacaaaaattattataaaataaatgtacaaatatcattt 44723363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 177 - 221
Target Start/End: Original strand, 740983 - 741027
Alignment:
Q  177 tgtcacaaaagttattagaaaatatatgtacaaatatcatttctc 221  Q
    ||||||||||||| ||||||||||  |||| ||||||||||||||    
T  740983 tgtcacaaaagttgttagaaaatagttgtataaatatcatttctc 741027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 77 - 113
Target Start/End: Original strand, 23665653 - 23665689
Alignment:
Q  77 ttgacaactatatttttacaaagaaaagtatctgttg 113  Q
    |||||||| |||||||||||||||||||||| |||||    
T  23665653 ttgacaaccatatttttacaaagaaaagtatgtgttg 23665689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 183 - 231
Target Start/End: Original strand, 38019537 - 38019585
Alignment:
Q  183 aaaagttattagaaaatatatgtacaaatatcatttctcatttataaat 231  Q
    ||||||||| | ||||||  | |||||||||||||||||||||||||||    
T  38019537 aaaagttatcacaaaataattatacaaatatcatttctcatttataaat 38019585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 177 - 225
Target Start/End: Original strand, 49020431 - 49020479
Alignment:
Q  177 tgtcacaaaagttattagaaaatatatgtacaaatatcatttctcattt 225  Q
    ||||||||||||| ||| |||||   |||||||||||||||||||||||    
T  49020431 tgtcacaaaagttgttaaaaaatggttgtacaaatatcatttctcattt 49020479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 2e-22; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 44 - 114
Target Start/End: Original strand, 36755945 - 36756015
Alignment:
Q  44 gttatttgaagatcaatttgattgataatcacattgacaactatatttttacaaagaaaagtatctgttgg 114  Q
    |||||||||| |||||||||||||| ||||||||||||||| |||||||||||||||||||||| ||||||    
T  36755945 gttatttgaatatcaatttgattgacaatcacattgacaaccatatttttacaaagaaaagtatatgttgg 36756015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 44 - 114
Target Start/End: Complemental strand, 33796443 - 33796373
Alignment:
Q  44 gttatttgaagatcaatttgattgataatcacattgacaactatatttttacaaagaaaagtatctgttgg 114  Q
    |||||||||| ||||||||| |||| ||||||||||||||| ||||||||| |||||||||||| ||||||    
T  33796443 gttatttgaaaatcaatttggttgacaatcacattgacaaccatatttttataaagaaaagtatgtgttgg 33796373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 44 - 114
Target Start/End: Complemental strand, 1436993 - 1436923
Alignment:
Q  44 gttatttgaagatcaatttgattgataatcacattgacaactatatttttacaaagaaaagtatctgttgg 114  Q
    |||||||||| ||||||||| || | || |||||||||||| |||||||||||||||||||||| ||||||    
T  1436993 gttatttgaacatcaatttggtttacaaccacattgacaaccatatttttacaaagaaaagtatgtgttgg 1436923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 44 - 114
Target Start/End: Complemental strand, 51699035 - 51698965
Alignment:
Q  44 gttatttgaagatcaatttgattgataatcacattgacaactatatttttacaaagaaaagtatctgttgg 114  Q
    |||||||||| ||||||||| |||| || |||||||||||| ||||| |||||||||||||||| ||||||    
T  51699035 gttatttgaacatcaatttggttgacaaccacattgacaaccatattcttacaaagaaaagtatgtgttgg 51698965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 44 - 114
Target Start/End: Original strand, 54099251 - 54099321
Alignment:
Q  44 gttatttgaagatcaatttgattgataatcacattgacaactatatttttacaaagaaaagtatctgttgg 114  Q
    |||||||||| ||||||||| |||| ||| ||||||||||  |||||||||||||||||||||| ||||||    
T  54099251 gttatttgaacatcaatttggttgacaattacattgacaatcatatttttacaaagaaaagtatatgttgg 54099321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 43 - 114
Target Start/End: Complemental strand, 47742460 - 47742389
Alignment:
Q  43 cgttatttgaagatcaatttgattgataatcacattgacaactatatttttacaaagaaaagtatctgttgg 114  Q
    ||||||||||| | ||||||| |||| || |||||| |||||||||||||||| |||| |||||| ||||||    
T  47742460 cgttatttgaacagcaatttggttgacaaccacattaacaactatatttttacgaagagaagtatgtgttgg 47742389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 177 - 222
Target Start/End: Original strand, 51137063 - 51137108
Alignment:
Q  177 tgtcacaaaagttattagaaaatatatgtacaaatatcatttctca 222  Q
    ||||||||||||||||| ||||||  ||||||||||||||||||||    
T  51137063 tgtcacaaaagttattaaaaaatagttgtacaaatatcatttctca 51137108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 177 - 221
Target Start/End: Complemental strand, 49021755 - 49021711
Alignment:
Q  177 tgtcacaaaagttattagaaaatatatgtacaaatatcatttctc 221  Q
    ||||||||||||||||| |||||  ||||||||||||||||||||    
T  49021755 tgtcacaaaagttattaaaaaatggatgtacaaatatcatttctc 49021711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 44 - 105
Target Start/End: Complemental strand, 29781074 - 29781013
Alignment:
Q  44 gttatttgaagatcaatttgattgataatcacattgacaactatatttttacaaagaaaagt 105  Q
    |||||||| | |||||||||||||| ||||| || |||||  ||||||||| ||||||||||    
T  29781074 gttatttggacatcaatttgattgacaatcatatggacaatcatatttttataaagaaaagt 29781013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 177 - 222
Target Start/End: Complemental strand, 48353040 - 48352995
Alignment:
Q  177 tgtcacaaaagttattagaaaatatatgtacaaatatcatttctca 222  Q
    ||||||||||||| ||| |||||  |||||||||||||||||||||    
T  48353040 tgtcacaaaagttgttaaaaaatggatgtacaaatatcatttctca 48352995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 77 - 114
Target Start/End: Complemental strand, 49021855 - 49021818
Alignment:
Q  77 ttgacaactatatttttacaaagaaaagtatctgttgg 114  Q
    |||||||| |||||||||||||||||||||| ||||||    
T  49021855 ttgacaaccatatttttacaaagaaaagtatgtgttgg 49021818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 34 - 107
Target Start/End: Complemental strand, 52485659 - 52485586
Alignment:
Q  34 aaagagctgcgttatttgaagatcaatttgattgataatcacattgacaactatatttttacaaagaaaagtat 107  Q
    |||||| || |||||||||| ||| ||||| |||| || |  || |||||| ||||||||||||||||||||||    
T  52485659 aaagagttgtgttatttgaacatctatttgtttgacaacctaatggacaaccatatttttacaaagaaaagtat 52485586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 77 - 114
Target Start/End: Complemental strand, 52714877 - 52714840
Alignment:
Q  77 ttgacaactatatttttacaaagaaaagtatctgttgg 114  Q
    |||||||| |||||||||||||||||||||| ||||||    
T  52714877 ttgacaaccatatttttacaaagaaaagtatgtgttgg 52714840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 177 - 221
Target Start/End: Original strand, 37894270 - 37894314
Alignment:
Q  177 tgtcacaaaagttattagaaaatatatgtacaaatatcatttctc 221  Q
    ||||||||||||| |||||||||   |||||||||||||||||||    
T  37894270 tgtcacaaaagttgttagaaaatggttgtacaaatatcatttctc 37894314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 179 - 223
Target Start/End: Complemental strand, 52714775 - 52714731
Alignment:
Q  179 tcacaaaagttattagaaaatatatgtacaaatatcatttctcat 223  Q
    |||||||| || |||||||||  ||||||||||||||||||||||    
T  52714775 tcacaaaaattgttagaaaatggatgtacaaatatcatttctcat 52714731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 177 - 221
Target Start/End: Original strand, 54099384 - 54099428
Alignment:
Q  177 tgtcacaaaagttattagaaaatatatgtacaaatatcatttctc 221  Q
    ||||||||||||| |||||||||  |||||||||||| |||||||    
T  54099384 tgtcacaaaagttgttagaaaatggatgtacaaatattatttctc 54099428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 44 - 114
Target Start/End: Complemental strand, 35067337 - 35067267
Alignment:
Q  44 gttatttgaagatcaatttgattgataatcacattgacaactatatttttacaaagaaaagtatctgttgg 114  Q
    |||||||||| ||||||||| |||| || |||||||||||| |||||||||||||||||||||| ||||||    
T  35067337 gttatttgaacatcaatttggttgacaaccacattgacaaccatatttttacaaagaaaagtatgtgttgg 35067267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 44 - 113
Target Start/End: Original strand, 41639692 - 41639761
Alignment:
Q  44 gttatttgaagatcaatttgattgataatcacattgacaactatatttttacaaagaaaagtatctgttg 113  Q
    |||||||||| ||||||||| |||| || ||| |||||||| |||||||||||||||||||||| |||||    
T  41639692 gttatttgaacatcaatttggttgacaaccacgttgacaaccatatttttacaaagaaaagtatgtgttg 41639761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 44 - 103
Target Start/End: Original strand, 39453211 - 39453270
Alignment:
Q  44 gttatttgaagatcaatttgattgataatcacattgacaactatatttttacaaagaaaa 103  Q
    |||||||||| |||||||||||||| || |||||||||||  ||||||||||||||||||    
T  39453211 gttatttgaacatcaatttgattgacaaccacattgacaatcatatttttacaaagaaaa 39453270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 44 - 103
Target Start/End: Complemental strand, 45405708 - 45405649
Alignment:
Q  44 gttatttgaagatcaatttgattgataatcacattgacaactatatttttacaaagaaaa 103  Q
    |||||||||| |||||| ||||||| || ||||| |||||||||||||||||||||||||    
T  45405708 gttatttgaacatcaatgtgattgacaaccacatggacaactatatttttacaaagaaaa 45405649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 44 - 107
Target Start/End: Complemental strand, 6440258 - 6440195
Alignment:
Q  44 gttatttgaagatcaatttgattgataatcacattgacaactatatttttacaaagaaaagtat 107  Q
    |||||||||| ||||| ||| |||| || || ||||||||| ||||||||||||||||||||||    
T  6440258 gttatttgaacatcaacttggttgacaaccaaattgacaaccatatttttacaaagaaaagtat 6440195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 177 - 230
Target Start/End: Original strand, 42620004 - 42620057
Alignment:
Q  177 tgtcacaaaagttattagaaaatatatgtacaaatatcatttctcatttataaa 230  Q
    ||||||||||||| |||||||||  ||||||||||||||||||||  |||||||    
T  42620004 tgtcacaaaagttgttagaaaatggatgtacaaatatcatttctctattataaa 42620057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 177 - 221
Target Start/End: Complemental strand, 5574310 - 5574266
Alignment:
Q  177 tgtcacaaaagttattagaaaatatatgtacaaatatcatttctc 221  Q
    |||||||||| || ||||||||||||| |||||||||||||||||    
T  5574310 tgtcacaaaaattgttagaaaatatatatacaaatatcatttctc 5574266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 44 - 107
Target Start/End: Complemental strand, 5574432 - 5574369
Alignment:
Q  44 gttatttgaagatcaatttgattgataatcacattgacaactatatttttacaaagaaaagtat 107  Q
    |||||||||| ||||||||| |||| ||  | ||||||| | ||||||||||||||||||||||    
T  5574432 gttatttgaacatcaatttggttgacaactatattgacacccatatttttacaaagaaaagtat 5574369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 76 - 114
Target Start/End: Original strand, 42619907 - 42619945
Alignment:
Q  76 attgacaactatatttttacaaagaaaagtatctgttgg 114  Q
    ||||||||| |||||||||||||||||||||| ||||||    
T  42619907 attgacaaccatatttttacaaagaaaagtatgtgttgg 42619945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 77 - 114
Target Start/End: Complemental strand, 6972298 - 6972261
Alignment:
Q  77 ttgacaactatatttttacaaagaaaagtatctgttgg 114  Q
    |||||||| |||||||||||||||||||||| ||||||    
T  6972298 ttgacaaccatatttttacaaagaaaagtatgtgttgg 6972261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 177 - 222
Target Start/End: Original strand, 25830273 - 25830318
Alignment:
Q  177 tgtcacaaaagttattagaaaatatatgtacaaatatcatttctca 222  Q
    ||||||||||||| |||||||||   ||||||||||||||||||||    
T  25830273 tgtcacaaaagttgttagaaaatggttgtacaaatatcatttctca 25830318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 177 - 221
Target Start/End: Original strand, 67188 - 67232
Alignment:
Q  177 tgtcacaaaagttattagaaaatatatgtacaaatatcatttctc 221  Q
    ||||||||||||| |||||||||   |||||||||||||||||||    
T  67188 tgtcacaaaagttgttagaaaatggttgtacaaatatcatttctc 67232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 182 - 222
Target Start/End: Complemental strand, 10344363 - 10344323
Alignment:
Q  182 caaaagttattagaaaatatatgtacaaatatcatttctca 222  Q
    ||||| |||||| |||||| |||||||||||||||||||||    
T  10344363 caaaaattattataaaatagatgtacaaatatcatttctca 10344323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 177 - 221
Target Start/End: Complemental strand, 13970963 - 13970919
Alignment:
Q  177 tgtcacaaaagttattagaaaatatatgtacaaatatcatttctc 221  Q
    ||||||||||||| |||| ||||  ||||||||||||||||||||    
T  13970963 tgtcacaaaagttgttaggaaatggatgtacaaatatcatttctc 13970919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 177 - 221
Target Start/End: Original strand, 43285990 - 43286034
Alignment:
Q  177 tgtcacaaaagttattagaaaatatatgtacaaatatcatttctc 221  Q
    |||||||||||||||||||||||   ||| |||||||||||||||    
T  43285990 tgtcacaaaagttattagaaaatggttgtccaaatatcatttctc 43286034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 44 - 114
Target Start/End: Complemental strand, 16690676 - 16690606
Alignment:
Q  44 gttatttgaagatcaatttgattgataatcacattgacaactatatttttacaaagaaaagtatctgttgg 114  Q
    |||||||||| ||||||||| |||| || |||||||||||| |||||||||||||||||||||| ||||||    
T  16690676 gttatttgaatatcaatttggttgacaaccacattgacaaccatatttttacaaagaaaagtatgtgttgg 16690606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 44 - 114
Target Start/End: Complemental strand, 38493802 - 38493732
Alignment:
Q  44 gttatttgaagatcaatttgattgataatcacattgacaactatatttttacaaagaaaagtatctgttgg 114  Q
    |||||||||| ||||||||| |||| || |||||||||| | ||||||| |||||||||||||| ||||||    
T  38493802 gttatttgaacatcaatttggttgacaaccacattgacacccatattttaacaaagaaaagtatgtgttgg 38493732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 44 - 107
Target Start/End: Complemental strand, 22098432 - 22098369
Alignment:
Q  44 gttatttgaagatcaatttgattgataatcacattgacaactatatttttacaaagaaaagtat 107  Q
    |||||||||| ||||||||| |||||||| | || |||||| | ||||||||||||||||||||    
T  22098432 gttatttgaacatcaatttgcttgataattaaatggacaaccacatttttacaaagaaaagtat 22098369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 44 - 114
Target Start/End: Complemental strand, 884618 - 884548
Alignment:
Q  44 gttatttgaagatcaatttgattgataatcacattgacaactatatttttacaaagaaaagtatctgttgg 114  Q
    |||||||||| ||||||||  |||| ||||| ||| ||||| |||||||||||| ||||||||| ||||||    
T  884618 gttatttgaacatcaatttagttgacaatcatattaacaaccatatttttacaatgaaaagtatgtgttgg 884548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 58 - 107
Target Start/End: Complemental strand, 26687041 - 26686992
Alignment:
Q  58 aatttgattgataatcacattgacaactatatttttacaaagaaaagtat 107  Q
    ||||||||||| ||  ||||||||||| ||||||||||||||||||||||    
T  26687041 aatttgattgacaactacattgacaaccatatttttacaaagaaaagtat 26686992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 58 - 107
Target Start/End: Complemental strand, 26956772 - 26956723
Alignment:
Q  58 aatttgattgataatcacattgacaactatatttttacaaagaaaagtat 107  Q
    ||||||||||| ||  ||||||||||| ||||||||||||||||||||||    
T  26956772 aatttgattgacaactacattgacaaccatatttttacaaagaaaagtat 26956723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 45 - 106
Target Start/End: Complemental strand, 34940809 - 34940748
Alignment:
Q  45 ttatttgaagatcaatttgattgataatcacattgacaactatatttttacaaagaaaagta 106  Q
    ||||||||| ||||||||| |||| || |||||||||||  ||||||||| |||||||||||    
T  34940809 ttatttgaacatcaatttggttgacaaccacattgacaatcatatttttataaagaaaagta 34940748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 177 - 224
Target Start/End: Complemental strand, 22098299 - 22098252
Alignment:
Q  177 tgtcacaaaagttattagaaaatatatgtacaaatatcatttctcatt 224  Q
    ||||||||||||| |||||||||   ||||||||||||||||||||||    
T  22098299 tgtcacaaaagttgttagaaaatggttgtacaaatatcatttctcatt 22098252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 44 - 114
Target Start/End: Original strand, 9168062 - 9168131
Alignment:
Q  44 gttatttgaagatcaatttgattgataatcacattgacaactatatttttacaaagaaaagtatctgttgg 114  Q
    |||||||||| ||||||||| |||| || || ||||||||  ||||||| |||||||||||||| ||||||    
T  9168062 gttatttgaacatcaatttggttgacaaccatattgacaatcatatttt-acaaagaaaagtatgtgttgg 9168131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 179 - 221
Target Start/End: Complemental strand, 38493666 - 38493625
Alignment:
Q  179 tcacaaaagttattagaaaatatatgtacaaatatcatttctc 221  Q
    ||||||||||||||||||| ||| |||||||||||||||||||    
T  38493666 tcacaaaagttattagaaattat-tgtacaaatatcatttctc 38493625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 177 - 226
Target Start/End: Original strand, 14321982 - 14322031
Alignment:
Q  177 tgtcacaaaagttattagaaaatatatgtacaaatatcatttctcattta 226  Q
    ||||||||||||| |||||||||   ||||||||||||||||| ||||||    
T  14321982 tgtcacaaaagttgttagaaaatggttgtacaaatatcatttcccattta 14322031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 58 - 107
Target Start/End: Complemental strand, 29687240 - 29687191
Alignment:
Q  58 aatttgattgataatcacattgacaactatatttttacaaagaaaagtat 107  Q
    ||||||| ||| ||| | || |||||||||||||||||||||||||||||    
T  29687240 aatttgaatgacaattatatggacaactatatttttacaaagaaaagtat 29687191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 177 - 221
Target Start/End: Complemental strand, 4088487 - 4088443
Alignment:
Q  177 tgtcacaaaagttattagaaaatatatgtacaaatatcatttctc 221  Q
    ||||||||||||| ||| |||||  ||||||||||||||||||||    
T  4088487 tgtcacaaaagttgttataaaatggatgtacaaatatcatttctc 4088443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 177 - 221
Target Start/End: Original strand, 10659100 - 10659144
Alignment:
Q  177 tgtcacaaaagttattagaaaatatatgtacaaatatcatttctc 221  Q
    ||||||||||||||||| |||||  |||| |||||||||||||||    
T  10659100 tgtcacaaaagttattaaaaaattaatgttcaaatatcatttctc 10659144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 177 - 225
Target Start/End: Complemental strand, 40829458 - 40829410
Alignment:
Q  177 tgtcacaaaagttattagaaaatatatgtacaaatatcatttctcattt 225  Q
    |||||||||| |||||| |||||   |||||||||||||||||||||||    
T  40829458 tgtcacaaaaattattaaaaaatggttgtacaaatatcatttctcattt 40829410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 44 - 114
Target Start/End: Complemental strand, 19843661 - 19843591
Alignment:
Q  44 gttatttgaagatcaatttgattgataatcacattgacaactatatttttacaaagaaaagtatctgttgg 114  Q
    |||||||||| ||||||||| |||| ||||| |||||||| ||||||||||||||||||||||| ||||||    
T  19843661 gttatttgaacatcaatttggttgacaatcatattgacaattatatttttacaaagaaaagtatgtgttgg 19843591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 44 - 117
Target Start/End: Original strand, 7084609 - 7084682
Alignment:
Q  44 gttatttgaagatcaatttgattgataatcacattgacaactatatttttacaaagaaaagtatctgttggtac 117  Q
    |||||||||| ||||||||| |||| || |||||||||||  |||||||||||||||||||||| |||||||||    
T  7084609 gttatttgaacatcaatttggttgacaaccacattgacaatcatatttttacaaagaaaagtatgtgttggtac 7084682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 44 - 113
Target Start/End: Original strand, 26290745 - 26290814
Alignment:
Q  44 gttatttgaagatcaatttgattgataatcacattgacaactatatttttacaaagaaaagtatctgttg 113  Q
    |||||||||| ||||||||| |||||||  ||||||||||  |||||||||||||||||| ||| |||||    
T  26290745 gttatttgaacatcaatttggttgataactacattgacaatcatatttttacaaagaaaaatatgtgttg 26290814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 44 - 107
Target Start/End: Complemental strand, 39309586 - 39309523
Alignment:
Q  44 gttatttgaagatcaatttgattgataatcacattgacaactatatttttacaaagaaaagtat 107  Q
    |||||||||| ||||||||| |||| ||||| ||||| ||  ||||||||||||||||||||||    
T  39309586 gttatttgaaaatcaatttggttgacaatcatattgataatcatatttttacaaagaaaagtat 39309523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 44 - 107
Target Start/End: Original strand, 43658606 - 43658669
Alignment:
Q  44 gttatttgaagatcaatttgattgataatcacattgacaactatatttttacaaagaaaagtat 107  Q
    |||||||||| || |||||| |||| || || |||||||||||| |||||||||||||||||||    
T  43658606 gttatttgaacattaatttggttgacaaccatattgacaactatttttttacaaagaaaagtat 43658669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 44 - 114
Target Start/End: Original strand, 21738512 - 21738582
Alignment:
Q  44 gttatttgaagatcaatttgattgataatcacattgacaactatatttttacaaagaaaagtatctgttgg 114  Q
    |||||||||| ||||||||| |||| ||  ||||||||||  |||||||||||||||||| ||| ||||||    
T  21738512 gttatttgaacatcaatttggttgacaacgacattgacaatcatatttttacaaagaaaaatatgtgttgg 21738582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 77 - 117
Target Start/End: Complemental strand, 33616611 - 33616571
Alignment:
Q  77 ttgacaactatatttttacaaagaaaagtatctgttggtac 117  Q
    |||||||| |||||||||||||||||||||| |||||||||    
T  33616611 ttgacaaccatatttttacaaagaaaagtatgtgttggtac 33616571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 44 - 103
Target Start/End: Complemental strand, 12071024 - 12070965
Alignment:
Q  44 gttatttgaagatcaatttgattgataatcacattgacaactatatttttacaaagaaaa 103  Q
    |||||||||| |||||| ||||||| || ||||| |||||| || |||||||||||||||    
T  12071024 gttatttgaacatcaatgtgattgacaaccacatggacaaccatctttttacaaagaaaa 12070965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 77 - 114
Target Start/End: Complemental strand, 6336394 - 6336357
Alignment:
Q  77 ttgacaactatatttttacaaagaaaagtatctgttgg 114  Q
    |||||||| |||||||||||||||||||||| ||||||    
T  6336394 ttgacaaccatatttttacaaagaaaagtatgtgttgg 6336357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 177 - 221
Target Start/End: Complemental strand, 6336296 - 6336252
Alignment:
Q  177 tgtcacaaaagttattagaaaatatatgtacaaatatcatttctc 221  Q
    ||||||||||||| |||||||||   |||||||||||||||||||    
T  6336296 tgtcacaaaagttgttagaaaatggttgtacaaatatcatttctc 6336252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 35 - 103
Target Start/End: Complemental strand, 14328567 - 14328499
Alignment:
Q  35 aagagctgcgttatttgaagatcaatttgattgataatcacattgacaactatatttttacaaagaaaa 103  Q
    |||||| | |||||||||| |||| | ||||||| || ||||| ||||| ||||||||||| |||||||    
T  14328567 aagagcagtgttatttgaacatcattgtgattgacaaccacatggacaattatatttttactaagaaaa 14328499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 177 - 221
Target Start/End: Complemental strand, 19843528 - 19843484
Alignment:
Q  177 tgtcacaaaagttattagaaaatatatgtacaaatatcatttctc 221  Q
    ||||||||||||| |||| ||||| |||||||||||| |||||||    
T  19843528 tgtcacaaaagttgttaggaaatagatgtacaaatattatttctc 19843484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 179 - 223
Target Start/End: Original strand, 21738645 - 21738689
Alignment:
Q  179 tcacaaaagttattagaaaatatatgtacaaatatcatttctcat 223  Q
    |||||||| ||||||||||||   |||||||||||||||||||||    
T  21738645 tcacaaaaattattagaaaatggttgtacaaatatcatttctcat 21738689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 177 - 221
Target Start/End: Complemental strand, 24766196 - 24766152
Alignment:
Q  177 tgtcacaaaagttattagaaaatatatgtacaaatatcatttctc 221  Q
    ||||||||||||||||| |||||   |||||||||||||||||||    
T  24766196 tgtcacaaaagttattaaaaaatggttgtacaaatatcatttctc 24766152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 77 - 117
Target Start/End: Original strand, 45259216 - 45259256
Alignment:
Q  77 ttgacaactatatttttacaaagaaaagtatctgttggtac 117  Q
    |||||||  |||||||||||||||||||||| |||||||||    
T  45259216 ttgacaaacatatttttacaaagaaaagtatgtgttggtac 45259256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0662 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: scaffold0662
Description:

Target: scaffold0662; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 44 - 114
Target Start/End: Complemental strand, 1321 - 1251
Alignment:
Q  44 gttatttgaagatcaatttgattgataatcacattgacaactatatttttacaaagaaaagtatctgttgg 114  Q
    |||||||||| |||| |||| |||| || |||||||||||  |||||||||||||||||||||||| ||||    
T  1321 gttatttgaacatcagtttggttgacaaccacattgacaatcatatttttacaaagaaaagtatctattgg 1251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0662; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 177 - 221
Target Start/End: Complemental strand, 1190 - 1146
Alignment:
Q  177 tgtcacaaaagttattagaaaatatatgtacaaatatcatttctc 221  Q
    ||||||||||||| |||| |||||  |||||||||||||||||||    
T  1190 tgtcacaaaagttgttaggaaataattgtacaaatatcatttctc 1146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 179 - 221
Target Start/End: Original strand, 34757928 - 34757970
Alignment:
Q  179 tcacaaaagttattagaaaatatatgtacaaatatcatttctc 221  Q
    |||||||||||||||||||||| ||||||||||||||||||||    
T  34757928 tcacaaaagttattagaaaatagatgtacaaatatcatttctc 34757970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 179 - 221
Target Start/End: Original strand, 34759202 - 34759244
Alignment:
Q  179 tcacaaaagttattagaaaatatatgtacaaatatcatttctc 221  Q
    |||||||||||||||||||||| ||||||||||||||||||||    
T  34759202 tcacaaaagttattagaaaatagatgtacaaatatcatttctc 34759244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 44 - 114
Target Start/End: Complemental strand, 47015182 - 47015112
Alignment:
Q  44 gttatttgaagatcaatttgattgataatcacattgacaactatatttttacaaagaaaagtatctgttgg 114  Q
    |||||||||| |||| |||| |||| || |||||||||||  |||||||||||||||||||||||| ||||    
T  47015182 gttatttgaacatcagtttggttgacaaccacattgacaatcatatttttacaaagaaaagtatctattgg 47015112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 44 - 103
Target Start/End: Complemental strand, 16019653 - 16019594
Alignment:
Q  44 gttatttgaagatcaatttgattgataatcacattgacaactatatttttacaaagaaaa 103  Q
    |||||||||| |||||||||||||| || || ||||||||| ||||||||| ||||||||    
T  16019653 gttatttgaacatcaatttgattgacaagcatattgacaaccatatttttataaagaaaa 16019594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 44 - 103
Target Start/End: Original strand, 34757803 - 34757862
Alignment:
Q  44 gttatttgaagatcaatttgattgataatcacattgacaactatatttttacaaagaaaa 103  Q
    ||||||| || |||||||||||||| ||||||| ||||||  ||||||||||||||||||    
T  34757803 gttatttaaatatcaatttgattgacaatcacactgacaatcatatttttacaaagaaaa 34757862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 44 - 103
Target Start/End: Original strand, 34759077 - 34759136
Alignment:
Q  44 gttatttgaagatcaatttgattgataatcacattgacaactatatttttacaaagaaaa 103  Q
    ||||||| || |||||||||||||| ||||||| ||||||  ||||||||||||||||||    
T  34759077 gttatttaaatatcaatttgattgacaatcacactgacaatcatatttttacaaagaaaa 34759136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 44 - 103
Target Start/End: Complemental strand, 15522531 - 15522472
Alignment:
Q  44 gttatttgaagatcaatttgattgataatcacattgacaactatatttttacaaagaaaa 103  Q
    |||||||||| |||||| ||||||| || ||||| |||||| || |||||||||||||||    
T  15522531 gttatttgaacatcaatgtgattgacaaccacatggacaaccatctttttacaaagaaaa 15522472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 177 - 221
Target Start/End: Complemental strand, 20760299 - 20760255
Alignment:
Q  177 tgtcacaaaagttattagaaaatatatgtacaaatatcatttctc 221  Q
    ||||||||||||| ||| ||||||  |||||||||||||||||||    
T  20760299 tgtcacaaaagttgttaaaaaataattgtacaaatatcatttctc 20760255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 177 - 221
Target Start/End: Complemental strand, 20766690 - 20766646
Alignment:
Q  177 tgtcacaaaagttattagaaaatatatgtacaaatatcatttctc 221  Q
    ||||||||||||| ||| ||||||  |||||||||||||||||||    
T  20766690 tgtcacaaaagttgttaaaaaataattgtacaaatatcatttctc 20766646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 177 - 221
Target Start/End: Original strand, 37514159 - 37514203
Alignment:
Q  177 tgtcacaaaagttattagaaaatatatgtacaaatatcatttctc 221  Q
    ||||||||||||| ||| |||||  ||||||||||||||||||||    
T  37514159 tgtcacaaaagttgttacaaaatggatgtacaaatatcatttctc 37514203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 177 - 221
Target Start/End: Complemental strand, 42815448 - 42815404
Alignment:
Q  177 tgtcacaaaagttattagaaaatatatgtacaaatatcatttctc 221  Q
    ||||||||||||| ||| ||||||  |||||||||||||||||||    
T  42815448 tgtcacaaaagttgttacaaaatagttgtacaaatatcatttctc 42815404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 55 - 107
Target Start/End: Original strand, 46665100 - 46665152
Alignment:
Q  55 atcaatttgattgataatcacattgacaactatatttttacaaagaaaagtat 107  Q
    ||||| |||||||| || || ||||||||| |||| |||||||||||||||||    
T  46665100 atcaacttgattgacaaccaaattgacaaccatatatttacaaagaaaagtat 46665152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 177 - 221
Target Start/End: Complemental strand, 47015051 - 47015007
Alignment:
Q  177 tgtcacaaaagttattagaaaatatatgtacaaatatcatttctc 221  Q
    ||||||||||||| |||| |||||  |||||||||||||||||||    
T  47015051 tgtcacaaaagttgttaggaaataattgtacaaatatcatttctc 47015007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 44 - 103
Target Start/End: Original strand, 35822869 - 35822928
Alignment:
Q  44 gttatttgaagatcaatttgattgataatcacattgacaactatatttttacaaagaaaa 103  Q
    |||||||||| ||||||||| |||| || ||| |||||||| ||||||||||||||||||    
T  35822869 gttatttgaacatcaatttggttgacaaccacgttgacaaccatatttttacaaagaaaa 35822928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 76 - 117
Target Start/End: Original strand, 47012496 - 47012537
Alignment:
Q  76 attgacaactatatttttacaaagaaaagtatctgttggtac 117  Q
    ||||||||| |||||||||||||||||||||| |||||||||    
T  47012496 attgacaaccatatttttacaaagaaaagtatatgttggtac 47012537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 44 - 103
Target Start/End: Original strand, 41430046 - 41430105
Alignment:
Q  44 gttatttgaagatcaatttgattgataatcacattgacaactatatttttacaaagaaaa 103  Q
    |||||||||| |||||| ||||||| || ||||| |||||| || |||||||||||||||    
T  41430046 gttatttgaacatcaatgtgattgacaaccacatggacaaccatctttttacaaagaaaa 41430105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 44 - 103
Target Start/End: Complemental strand, 42584979 - 42584920
Alignment:
Q  44 gttatttgaagatcaatttgattgataatcacattgacaactatatttttacaaagaaaa 103  Q
    |||||||||| |||||| ||||||| || ||||| |||||| || |||||||||||||||    
T  42584979 gttatttgaacatcaatgtgattgacaaccacatggacaaccatctttttacaaagaaaa 42584920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 177 - 230
Target Start/End: Complemental strand, 23845008 - 23844956
Alignment:
Q  177 tgtcacaaaagttattagaaaatatatgtacaaatatcatttctcatttataaa 230  Q
    |||||||||| |||||| |||||   ||||||||||||||||||||||||||||    
T  23845008 tgtcacaaaa-ttattacaaaattgttgtacaaatatcatttctcatttataaa 23844956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 77 - 114
Target Start/End: Original strand, 40854582 - 40854619
Alignment:
Q  77 ttgacaactatatttttacaaagaaaagtatctgttgg 114  Q
    |||||||| |||||||||||||||||||||| ||||||    
T  40854582 ttgacaaccatatttttacaaagaaaagtatgtgttgg 40854619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 177 - 222
Target Start/End: Original strand, 40854682 - 40854727
Alignment:
Q  177 tgtcacaaaagttattagaaaatatatgtacaaatatcatttctca 222  Q
    ||||||||||||| |||||||||  ||||||| |||||||||||||    
T  40854682 tgtcacaaaagttgttagaaaatggatgtacagatatcatttctca 40854727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 46 - 103
Target Start/End: Original strand, 44496699 - 44496756
Alignment:
Q  46 tatttgaagatcaatttgattgataatcacattgacaactatatttttacaaagaaaa 103  Q
    |||||||| ||||||||| |||| ||| | || |||||| ||||||||||||||||||    
T  44496699 tatttgaacatcaatttgtttgacaattaaatggacaaccatatttttacaaagaaaa 44496756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 177 - 225
Target Start/End: Original strand, 22638911 - 22638959
Alignment:
Q  177 tgtcacaaaagttattagaaaatatatgtacaaatatcatttctcattt 225  Q
    ||||||||||||| | | |||||| |||| |||||||||||||||||||    
T  22638911 tgtcacaaaagttgtcataaaatagatgttcaaatatcatttctcattt 22638959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 177 - 221
Target Start/End: Original strand, 47012597 - 47012641
Alignment:
Q  177 tgtcacaaaagttattagaaaatatatgtacaaatatcatttctc 221  Q
    |||||||||| ||||||||||||   |||||||||||||||||||    
T  47012597 tgtcacaaaaattattagaaaatgattgtacaaatatcatttctc 47012641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 77 - 117
Target Start/End: Original strand, 47954029 - 47954069
Alignment:
Q  77 ttgacaactatatttttacaaagaaaagtatctgttggtac 117  Q
    |||||||| ||||||||| |||||||||||| |||||||||    
T  47954029 ttgacaaccatatttttataaagaaaagtatgtgttggtac 47954069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 44 - 117
Target Start/End: Complemental strand, 33651197 - 33651124
Alignment:
Q  44 gttatttgaagatcaatttgattgataatcacattgacaactatatttttacaaagaaaagtatctgttggtac 117  Q
    |||||||||| ||| ||||| |||| ||||| || |||||| |||||||||||||||||| ||| | |||||||    
T  33651197 gttatttgaacatccatttgtttgacaatcaaatagacaaccatatttttacaaagaaaattatgtattggtac 33651124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 177 - 226
Target Start/End: Complemental strand, 33651064 - 33651015
Alignment:
Q  177 tgtcacaaaagttattagaaaatatatgtacaaatatcatttctcattta 226  Q
    |||||||||| |||||| |||||| |||| ||||||||||||||| ||||    
T  33651064 tgtcacaaaaattattacaaaatagatgttcaaatatcatttctctttta 33651015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 181 - 221
Target Start/End: Original strand, 204476 - 204516
Alignment:
Q  181 acaaaagttattagaaaatatatgtacaaatatcatttctc 221  Q
    ||||||||| | |||||||| ||||||||||||||||||||    
T  204476 acaaaagttgtcagaaaatagatgtacaaatatcatttctc 204516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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