View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8109_low_19 (Length: 331)

Name: NF8109_low_19
Description: NF8109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8109_low_19
NF8109_low_19
[»] chr5 (3 HSPs)
chr5 (211-324)||(12384178-12384292)
chr5 (15-96)||(12383799-12383880)
chr5 (88-142)||(12384055-12384109)
[»] chr8 (3 HSPs)
chr8 (15-142)||(26588919-26589040)
chr8 (220-303)||(26589117-26589201)
chr8 (235-303)||(1163433-1163501)
[»] chr1 (3 HSPs)
chr1 (15-142)||(18550196-18550317)
chr1 (211-303)||(2980431-2980524)
chr1 (211-303)||(18550387-18550480)
[»] chr6 (4 HSPs)
chr6 (15-142)||(7733164-7733285)
chr6 (211-303)||(24586206-24586299)
chr6 (220-291)||(7733362-7733434)
chr6 (211-303)||(32934357-32934450)
[»] chr2 (2 HSPs)
chr2 (15-142)||(4791535-4791656)
chr2 (211-261)||(4791724-4791774)
[»] chr3 (1 HSPs)
chr3 (211-303)||(5700552-5700645)


Alignment Details
Target: chr5 (Bit Score: 79; Significance: 7e-37; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 211 - 324
Target Start/End: Original strand, 12384178 - 12384292
Alignment:
Q  211 taaatcttcataatatagtagaactagaagacaaaaataagaataaaggtaccaacttaaa-aggatcaatgtttattaacaaaataacaacaagtccac 309  Q
    ||||||| |||||||||||||||||||||||||||||||| ||||||| || |||||||||  |||| ||||||||||||||||||||||||||||||||    
T  12384178 taaatctccataatatagtagaactagaagacaaaaataaaaataaagataacaacttaaaggggattaatgtttattaacaaaataacaacaagtccac 12384277  T
Q  310 cttcaagtattatct 324  Q
    |||||||||| ||||    
T  12384278 cttcaagtatgatct 12384292  T

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Target: chr5; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 15 - 96
Target Start/End: Original strand, 12383799 - 12383880
Alignment:
Q  15 agtttccacttaattaacttcttgagactctaatgttgattttcttttgtagtactttttcatttctagcatattcaaataa 96  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  12383799 agtttccacttaattaacttcttgagactctaatgttgattttcttttgtagtacttttccatttctagcatattcaaataa 12383880  T

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Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 88 - 142
Target Start/End: Original strand, 12384055 - 12384109
Alignment:
Q  88 ttcaaataatataactaattaataatttgatttcaatacaagcacaagtgagaca 142  Q
    |||||||||||||| | |||||||| |||||| ||||||||||||||||||||||    
T  12384055 ttcaaataatataattgattaataacttgattccaatacaagcacaagtgagaca 12384109  T

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Target: chr8 (Bit Score: 77; Significance: 1e-35; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 15 - 142
Target Start/End: Original strand, 26588919 - 26589040
Alignment:
Q  15 agtttccacttaattaacttcttgagactctaatgttgattttcttttgtagtactttttcatttctagcatattcaaataatataactaattaataatt 114  Q
    ||||||||||| ||||||||||||||||||| |||||      |||||||||||| ||| |||||||||||||||||||||||||||||||||||| | |    
T  26588919 agtttccacttcattaacttcttgagactctgatgtt------cttttgtagtacctttccatttctagcatattcaaataatataactaattaattact 26589012  T
Q  115 tgatttcaatacaagcacaagtgagaca 142  Q
    ||||| ||||||||||||||||||||||    
T  26589013 tgattccaatacaagcacaagtgagaca 26589040  T

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Target: chr8; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 220 - 303
Target Start/End: Original strand, 26589117 - 26589201
Alignment:
Q  220 ataatatagtagaactagaagacaaaaataagaataaaggtaccaacttaaaagg-atcaatgtttattaacaaaataacaacaa 303  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||| | || || | ||||||||||||||  ||||||||    
T  26589117 ataatatagtagaactagaagacaaaaataagaataaaggtaacaacttacatggaattattgtttattaacaaagcaacaacaa 26589201  T

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Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 235 - 303
Target Start/End: Complemental strand, 1163501 - 1163433
Alignment:
Q  235 tagaagacaaaaataagaataaaggtaccaacttaaaaggatcaatgtttattaacaaaataacaacaa 303  Q
    ||||||||||||||||||||||||||| ||||||| | |||| ||| ||| |||||||||| |||||||    
T  1163501 tagaagacaaaaataagaataaaggtaacaacttacatggattaatatttgttaacaaaatgacaacaa 1163433  T

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Target: chr1 (Bit Score: 69; Significance: 6e-31; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 15 - 142
Target Start/End: Original strand, 18550196 - 18550317
Alignment:
Q  15 agtttccacttaattaacttcttgagactctaatgttgattttcttttgtagtactttttcatttctagcatattcaaataatataactaattaataatt 114  Q
    ||||||||||| ||||||||||||||||||| |||||      |||||||||||| ||| ||||||||||||||||||||||||||||||||| |  | |    
T  18550196 agtttccacttcattaacttcttgagactctgatgtt------cttttgtagtacctttccatttctagcatattcaaataatataactaatttagtact 18550289  T
Q  115 tgatttcaatacaagcacaagtgagaca 142  Q
    ||||| ||||||||||||||||||||||    
T  18550290 tgattccaatacaagcacaagtgagaca 18550317  T

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Target: chr1; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 211 - 303
Target Start/End: Complemental strand, 2980524 - 2980431
Alignment:
Q  211 taaatcttcataatatagtagaactagaagacaaaaataagaataaaggtaccaactta-aaaggatcaatgtttattaacaaaataacaacaa 303  Q
    |||||||  |||||||| ||||| ||||||||||||||||||||||||||| ||||||| |  |||| ||||||||||||||||||||||||||    
T  2980524 taaatctcaataatataatagaattagaagacaaaaataagaataaaggtaacaacttacaggggattaatgtttattaacaaaataacaacaa 2980431  T

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Target: chr1; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 211 - 303
Target Start/End: Original strand, 18550387 - 18550480
Alignment:
Q  211 taaatcttcataatatagtagaactagaagacaaaaataagaataaaggtaccaactta-aaaggatcaatgtttattaacaaaataacaacaa 303  Q
    |||||||  ||||||||||||||||||||||||||||||||| |||||||| ||||||| |  |||| ||||||||||||||||  ||||||||    
T  18550387 taaatctcaataatatagtagaactagaagacaaaaataagattaaaggtaacaacttacatgggattaatgtttattaacaaagcaacaacaa 18550480  T

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Target: chr6 (Bit Score: 65; Significance: 1e-28; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 15 - 142
Target Start/End: Original strand, 7733164 - 7733285
Alignment:
Q  15 agtttccacttaattaacttcttgagactctaatgttgattttcttttgtagtactttttcatttctagcatattcaaataatataactaattaataatt 114  Q
    ||||||||||| ||||||||||||||||||| |||||      |||||||||||  ||| ||||| ||||||||||||||||||||||||||| || | |    
T  7733164 agtttccacttcattaacttcttgagactctgatgtt------cttttgtagtatctttccatttttagcatattcaaataatataactaatttattact 7733257  T
Q  115 tgatttcaatacaagcacaagtgagaca 142  Q
    ||||| ||||||||||||||||||||||    
T  7733258 tgattccaatacaagcacaagtgagaca 7733285  T

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Target: chr6; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 211 - 303
Target Start/End: Original strand, 24586206 - 24586299
Alignment:
Q  211 taaatcttcataatatagtagaactagaagacaaaaataagaataaaggtaccaactta-aaaggatcaatgtttattaacaaaataacaacaa 303  Q
    |||||||  |||||||| ||||| ||||||||||||||||||||||||||| ||||||| |  |||| ||||||||||||||||||||||||||    
T  24586206 taaatctcaataatataatagaattagaagacaaaaataagaataaaggtaacaacttacatgggattaatgtttattaacaaaataacaacaa 24586299  T

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Target: chr6; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 220 - 291
Target Start/End: Original strand, 7733362 - 7733434
Alignment:
Q  220 ataatatagtagaactagaagacaaaaataagaataaaggtaccaactta-aaaggatcaatgtttattaaca 291  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||| |  |||| ||||||||||||||    
T  7733362 ataatatagtagaactagaagacaaaaataagaataaaggtaacaacttacatgggattaatgtttattaaca 7733434  T

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Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 211 - 303
Target Start/End: Original strand, 32934357 - 32934450
Alignment:
Q  211 taaatcttcataatatagtagaactagaagacaaaaataagaataaaggtaccaactta-aaaggatcaatgtttattaacaaaataacaacaa 303  Q
    |||||||  |||||||||||||||||||||||||| ||||||||||| ||| || |||| |  |||| ||||||||||||||||  ||||||||    
T  32934357 taaatctcaataatatagtagaactagaagacaaagataagaataaatgtaacatcttacatgggattaatgtttattaacaaagcaacaacaa 32934450  T

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Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 15 - 142
Target Start/End: Original strand, 4791535 - 4791656
Alignment:
Q  15 agtttccacttaattaacttcttgagactctaatgttgattttcttttgtagtactttttcatttctagcatattcaaataatataactaattaataatt 114  Q
    ||||||||||| ||||||||||||||||||| |||||      |||||||||||| |||  |||||||||||||||||||||||||||||||| |  | |    
T  4791535 agtttccacttcattaacttcttgagactctcatgtt------cttttgtagtacctttcaatttctagcatattcaaataatataactaatttagtact 4791628  T
Q  115 tgatttcaatacaagcacaagtgagaca 142  Q
    ||||| ||||||||||||||||||||||    
T  4791629 tgattccaatacaagcacaagtgagaca 4791656  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 211 - 261
Target Start/End: Original strand, 4791724 - 4791774
Alignment:
Q  211 taaatcttcataatatagtagaactagaagacaaaaataagaataaaggta 261  Q
    |||||||  ||||||||||||||||||||||||||||||||| ||||||||    
T  4791724 taaatctcaataatatagtagaactagaagacaaaaataagattaaaggta 4791774  T

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Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 211 - 303
Target Start/End: Complemental strand, 5700645 - 5700552
Alignment:
Q  211 taaatcttcataatatagtagaactagaagacaaaaataagaataaaggtaccaactta-aaaggatcaatgtttattaacaaaataacaacaa 303  Q
    |||||||  |||||||| ||||| ||||||||||||||||  ||||||||| ||||||| |  |||| ||||||||||||||||||||||||||    
T  5700645 taaatctcaataatataatagaattagaagacaaaaataaagataaaggtaacaacttacaggggattaatgtttattaacaaaataacaacaa 5700552  T

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