View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8109_low_2 (Length: 602)
Name: NF8109_low_2
Description: NF8109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8109_low_2 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 559; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 559; E-Value: 0
Query Start/End: Original strand, 12 - 602
Target Start/End: Original strand, 38418432 - 38419022
Alignment:
| Q |
12 |
tgagatgaaggagctgatggatcttgcgaaggagcgggaatttacactgagccctgtcacaaatgccaagtttatatcggctttgtgccaagctggaaga |
111 |
Q |
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| T |
38418432 |
tgagatgaaggagctgatggatcttgcgaaggagcgggaatttacacttagccctgtcacaaatgccaagtttatatcggctttgtgccaagctggaaga |
38418531 |
T |
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| Q |
112 |
ttagaagatgtttatgtcgagcatgggaagctcgacaatgcaactgctaagctgtactacgataaaatgatcgagggttttattaaatcaaataagggag |
211 |
Q |
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| T |
38418532 |
ttagaagatggttatgacgagcatgggaagctcgaaaatgcaactgctaagctgtactacgataaaatgattgagggttttattaaatcaaataagggag |
38418631 |
T |
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| Q |
212 |
agattgctgctcgccttcttgttgaaatgaaagagaagaatcttagattgacgcggttctcatgccgagctgttatttgcagattacttgagatggataa |
311 |
Q |
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| T |
38418632 |
agattgctgctcgccttcttgttgaaatgaaagagaagaatcttagattgacgcggttctcatgccgagctgttatttgcagattacttgatatggataa |
38418731 |
T |
|
| Q |
312 |
tccaataacacgtgttaccaagttattggactcgctgactcaaggtaaacctgatactaagattttcaacttttttatcgttggagctgggcatgccaat |
411 |
Q |
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| T |
38418732 |
tccaataacacgtgttaccaagttattggactcgctgactcaaggtaaacctgatactaagattttcaactttttcatcgttggagctgggcatgccaat |
38418831 |
T |
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| Q |
412 |
aacacagacttggccagggaagtatatgagttgatgccaaggaataacattgtgcccactcttttatctcaacgtcttgtgttaaatagttatttgagaa |
511 |
Q |
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| T |
38418832 |
aacacagacttggccagggaagtatatgagttgatgccaaggaataacattgtgcccactcttttatctcaacgtcttgtgttaaatagttatttgagaa |
38418931 |
T |
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| Q |
512 |
atggaaagattattgatgctttgaatttctttaatagtctccggcgcctgggtgtggtgagtaaaaaattatactgttccatggttattgg |
602 |
Q |
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| T |
38418932 |
atggaaagattattgatgctttgaatttctttaatagtctccggcgcctgggtgtggtgagtaaaaaattatattgttccatggttattgg |
38419022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 12 - 559
Target Start/End: Original strand, 38410443 - 38410990
Alignment:
| Q |
12 |
tgagatgaaggagctgatggatcttgcgaaggagcgggaatttacactgagccctgtcacaaatgccaagtttatatcggctttgtgccaagctggaaga |
111 |
Q |
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||||||||||||||||||| ||||||| |||||| | ||||||| |||| | ||||| ||| |||||||||||||||||||||||||||||||||| |
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| T |
38410443 |
tgagatgaaggagctgatgcatcttgcctgggagcgaaactttacaccaagccatatcacatatgacaagtttatatcggctttgtgccaagctggaaga |
38410542 |
T |
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| Q |
112 |
ttagaagatgtttatgtcgagcatgggaagctcgacaatgcaactgctaagctgtactacgataaaatgatcgagggttttattaaatcaaataagggag |
211 |
Q |
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| T |
38410543 |
ctagaagatagttatttggtgcacggggatcacaacaatgcaactgctagactgtcctatggtaggatggttaagagttttattaagtttaagaggggag |
38410642 |
T |
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| Q |
212 |
agattgctgctcgccttcttgttgaaatgaaagagaagaatcttagattgacgcggttctcatgccgagctgttatttgcagattacttgagatggataa |
311 |
Q |
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| T |
38410643 |
acattgctgctcgccttctggttaaaatgaaagagaagaattttgaattgacgcggatctggtgcacggctgttattggaagtttacttgatatggaaaa |
38410742 |
T |
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| Q |
312 |
tccaataacacgtgttaccaagttattggactcgctgactcaaggtaaacctgatactaagattttcaacttttttatcgttggagctgggcatgccaat |
411 |
Q |
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| T |
38410743 |
tccaaaatcacgtgttttcaatttattggacatgctgactcatggtaaacctgatgctaagattttcaactttttcattgatggagctgtgcatgccaat |
38410842 |
T |
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| Q |
412 |
aacacagacttggccagggaagtatatgagttgatgccaaggaataacattgtgcccactcttttatctcaacgtcttgtgttaaatagttatttgagaa |
511 |
Q |
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|| ||||| ||| |||||||||||||||||||||||| |||||||||||||||||||| | || |||||||||||||||||| | | ||||||||| || |
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| T |
38410843 |
aatacagagttgtccagggaagtatatgagttgatgctaaggaataacattgtgcccagtagttcatctcaacgtcttgtgttgattggttatttgaaaa |
38410942 |
T |
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| Q |
512 |
atggaaagattattgatgctttgaatttctttaatagtctccggcgcc |
559 |
Q |
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| T |
38410943 |
gtggaaagatatctgatgctttgaatttctttcacagtcttcggcgcc |
38410990 |
T |
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