View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8109_low_20 (Length: 331)
Name: NF8109_low_20
Description: NF8109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8109_low_20 |
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Alignment Details
Target: chr8 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 1 - 323
Target Start/End: Complemental strand, 30524954 - 30524620
Alignment:
| Q |
1 |
gtaatacggaactcgtgtgtactgtattcatgtattatccatatagtaatgataatgacatgaaaatgaaaatgaaaat------------aatagtact |
88 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| |
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| T |
30524954 |
gtaatacggaactcgtgtgtactgtattcatgtattatccatatagtaataataatgacatgaaaatgaaaatgaaaatgaaaatgaaaataatagtact |
30524855 |
T |
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| Q |
89 |
atacacgctgttgagacacgtgcttagtgtttctattaattttcttcaaattgcacttaatttaatccaaaatcataaatgagctgtagagagagtggaa |
188 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30524854 |
atacacgctgttgagacacgtgcttagtgtttctattaattttcttcaaattgcacttaatttaatccaaaatcataaatgagctgtagagagagtggaa |
30524755 |
T |
|
| Q |
189 |
atctagctggtagtagaaacaacaaactctcctctccttctcaccctcttcctacttcactattttacttcttaaatcctataaatacatcaaatcttca |
288 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30524754 |
atctagctggtagtagaaacaacaaactctcctctccttctcaccctcttcctacttcactattttacttcttaaatcctataaatacatcaaatcttca |
30524655 |
T |
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| Q |
289 |
tcannnnnnnctcactcatcttattcattcatctc |
323 |
Q |
| |
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||| ||||||||||||||||||||||||| |
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| T |
30524654 |
tcatttttttctcactcatcttattcattcatctc |
30524620 |
T |
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