View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8109_low_21 (Length: 321)
Name: NF8109_low_21
Description: NF8109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8109_low_21 |
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| [»] scaffold0350 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 176; Significance: 8e-95; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 18 - 297
Target Start/End: Complemental strand, 6040743 - 6040464
Alignment:
| Q |
18 |
tttaagcaatacaggtattgaaatactgcactcatccatcggtcgtatgagcaagcttaggggtcttgatttacatggtttaagacttaagaatataccg |
117 |
Q |
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| T |
6040743 |
tttaagcaatacaggtattgaaatactgcactcatcaatcggtcgtatgagcatgctttggaggcttgatttacaaggtttaagacttaagaatctcccg |
6040644 |
T |
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| Q |
118 |
aaagaaatgtcttgcctgagatcacttattaggcttgatctttctaattgcaatgtagtaactaaatcaaagttagaagccatatttggtggtttagaat |
217 |
Q |
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| T |
6040643 |
aaagaaatgtcttccatgagatcacttacagagattgatctttctaattgcaatgtagtaactaaatcaaagttagaagccttatttggtggtttagaat |
6040544 |
T |
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| Q |
218 |
cgttggaaatactatatttgaaggattgttgcaacttgcttgaactccccatgaatatcgattccttgtcgtcactgtat |
297 |
Q |
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| T |
6040543 |
cgttgataatactatatttgaaagattgtggcaacttgcttgaactccctgtgaacattgattccttgtcattactgtat |
6040464 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 18 - 297
Target Start/End: Complemental strand, 6044375 - 6044096
Alignment:
| Q |
18 |
tttaagcaatacaggtattgaaatactgcactcatccatcggtcgtatgagcaagcttaggggtcttgatttacatggtttaagacttaagaatataccg |
117 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| || | ||||||||||| |||||||||||||||||| | ||| |
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| T |
6044375 |
tttaagcaatacaggtattgaaatactgcactcatcaatcggtcgtatgagcatgctttggaggcttgatttacaaggtttaagacttaagaatctcccg |
6044276 |
T |
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| Q |
118 |
aaagaaatgtcttgcctgagatcacttattaggcttgatctttctaattgcaatgtagtaactaaatcaaagttagaagccatatttggtggtttagaat |
217 |
Q |
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| T |
6044275 |
aaagaaatgtcttccatgagatcacttacagagattgatctttctaattgcaatgtagtaactaaatcaaagttagaagccttatttggtggtttagaat |
6044176 |
T |
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| Q |
218 |
cgttggaaatactatatttgaaggattgttgcaacttgcttgaactccccatgaatatcgattccttgtcgtcactgtat |
297 |
Q |
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| T |
6044175 |
cgttgataatactatatttgaaagattgtggcaacttgcttgaactccctgtgaacattgattccttgtcattactgtat |
6044096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 173 - 266
Target Start/End: Complemental strand, 6056050 - 6055957
Alignment:
| Q |
173 |
tagtaactaaatcaaagttagaagccatatttggtggtttagaatcgttggaaatactatatttgaaggattgttgcaacttgcttgaactccc |
266 |
Q |
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| T |
6056050 |
tagtaactaaatcgaatttagaagacatatttgatggcttgggatcattgaaaatattatatttgaaatattgtggcaatttgcttgaactccc |
6055957 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 158 - 198
Target Start/End: Complemental strand, 6139087 - 6139047
Alignment:
| Q |
158 |
tttctaattgcaatgtagtaactaaatcaaagttagaagcc |
198 |
Q |
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| T |
6139087 |
tttctaagtgcaatgttgttactaaatcaaagttagaagcc |
6139047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 158 - 198
Target Start/End: Complemental strand, 6177176 - 6177136
Alignment:
| Q |
158 |
tttctaattgcaatgtagtaactaaatcaaagttagaagcc |
198 |
Q |
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| T |
6177176 |
tttctaagtgcaatgttgttactaaatcaaagttagaagcc |
6177136 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0350 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0350
Description:
Target: scaffold0350; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 173 - 266
Target Start/End: Complemental strand, 15475 - 15382
Alignment:
| Q |
173 |
tagtaactaaatcaaagttagaagccatatttggtggtttagaatcgttggaaatactatatttgaaggattgttgcaacttgcttgaactccc |
266 |
Q |
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| T |
15475 |
tagtaactaaatcgaatttagaagacatatttgatggcttgggatcattgaaaatattatatttgaaatattgtggcaatttgcttgaactccc |
15382 |
T |
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