View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8109_low_24 (Length: 283)
Name: NF8109_low_24
Description: NF8109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8109_low_24 |
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Alignment Details
Target: chr4 (Bit Score: 249; Significance: 1e-138; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 39522123 - 39522371
Alignment:
| Q |
1 |
tttttaagttatgaaattgatgattgctattcatagaagttggtagaagtagggagtggagaagagaaggggaaccaatgatgaagaagacatagataag |
100 |
Q |
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| T |
39522123 |
tttttaagttatgaaattgatgattgctattcatagaagttggtagaagtagggagtggagaagagaaggggaaccaatgatgaagaagacatagataag |
39522222 |
T |
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| Q |
101 |
aggaagactttagctgtggactggttaagtcgtcacctttgaattttcttatttcttgtttgtttctctctttaattttaaatataaataaaatatttga |
200 |
Q |
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| T |
39522223 |
aggaagactttagctgtggactggttaagtcgtcacctttgaattttcttatttcttgtttgtttctctctttaattttaaatataaataaaatatttga |
39522322 |
T |
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| Q |
201 |
aagttgatttatcacctaccaataccatgactatagtataacacactct |
249 |
Q |
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| T |
39522323 |
aagttgatttatcacctaccaataccatgactatagtataacacactct |
39522371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 18 - 169
Target Start/End: Original strand, 39581306 - 39581459
Alignment:
| Q |
18 |
tgatgattgctattcatagaagttggtagaagtagggagtgg-agaagagaagggga--accaatgatgaagaagacatagataagaggaagactttagc |
114 |
Q |
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| T |
39581306 |
tgatgactgctattcatagaagttagtagaagtagggagtgggagaagagaagggggggaccaatga---agaagacttgcataagaagaagactctatc |
39581402 |
T |
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| Q |
115 |
tgtggactgg--ttaagtcgtcacctttgaattttcttatttcttgtttgtttctct |
169 |
Q |
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| T |
39581403 |
tgtggactgtgattaagttgtccgctttgaattttctttttccttatttgtttctct |
39581459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 94 - 167
Target Start/End: Original strand, 39571647 - 39571722
Alignment:
| Q |
94 |
agataagaggaagactttagctgtggactg--gttaagtcgtcacctttgaattttcttatttcttgtttgtttct |
167 |
Q |
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| T |
39571647 |
agataagaggaagacttaagccgtggagtgtggttaagtcgtcagctttggattttcttcttccttgtttgtttct |
39571722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 94 - 167
Target Start/End: Original strand, 39576831 - 39576906
Alignment:
| Q |
94 |
agataagaggaagactttagctgtggactg--gttaagtcgtcacctttgaattttcttatttcttgtttgtttct |
167 |
Q |
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| T |
39576831 |
agataagaggaagacttaagccgtggagtgtggttaagtctttagctttggattttcttcttccttgtttgtttct |
39576906 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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