View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8109_low_26 (Length: 277)

Name: NF8109_low_26
Description: NF8109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8109_low_26
NF8109_low_26
[»] chr4 (6 HSPs)
chr4 (29-238)||(17420048-17420255)
chr4 (1-108)||(19727034-19727142)
chr4 (1-108)||(6821952-6822059)
chr4 (28-108)||(3575540-3575619)
chr4 (34-107)||(40275198-40275271)
chr4 (233-263)||(17422063-17422093)
[»] scaffold0010 (1 HSPs)
scaffold0010 (1-108)||(143644-143751)
[»] scaffold0061 (2 HSPs)
scaffold0061 (1-108)||(16127-16234)
scaffold0061 (1-108)||(25185-25292)
[»] chr7 (1 HSPs)
chr7 (1-108)||(16067522-16067628)
[»] scaffold0170 (1 HSPs)
scaffold0170 (1-108)||(18239-18346)
[»] chr5 (4 HSPs)
chr5 (28-112)||(19020764-19020848)
chr5 (4-108)||(25792379-25792482)
chr5 (1-108)||(25755768-25755873)
chr5 (54-108)||(25931776-25931830)
[»] chr2 (5 HSPs)
chr2 (28-108)||(24315754-24315834)
chr2 (28-104)||(23246419-23246495)
chr2 (34-108)||(20183109-20183183)
chr2 (47-106)||(7902333-7902392)
chr2 (68-117)||(22522195-22522244)
[»] scaffold0408 (1 HSPs)
scaffold0408 (1-108)||(15543-15650)
[»] chr6 (5 HSPs)
chr6 (1-108)||(14747108-14747215)
chr6 (29-108)||(7848984-7849064)
chr6 (1-108)||(8886403-8886511)
chr6 (17-108)||(22394930-22395021)
chr6 (47-117)||(23662867-23662939)
[»] scaffold1043 (1 HSPs)
scaffold1043 (28-98)||(1-70)
[»] chr8 (1 HSPs)
chr8 (51-97)||(11281569-11281615)


Alignment Details
Target: chr4 (Bit Score: 175; Significance: 3e-94; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 29 - 238
Target Start/End: Original strand, 17420048 - 17420255
Alignment:
Q  29 aactttgggaaatacggttttcccgttcatctcagttaatttacactcatgatctcgaactcttctctctcaccccatacttggtttgatgcatgtagga 128  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||    
T  17420048 aactttgggaaatacgattttcccgttcatctcagttaatttacactcatgatctcaaactcttctctctcaccccatacctggtttgatgcatgtagga 17420147  T
Q  129 cacaaggataaaaagaatttcagcagcaaaagaagatcggcagcacacaaccaacaagttaaatggttcaccggcagaatcacgaatcagcatgatatgg 228  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||  |  ||||||    
T  17420148 cacaaggataaaaagaatttcagcagcaaaagaagatcggtagcacacaaccaacaagttaaatggttcaccggcagaatcacgaatca--aaaatatgg 17420245  T
Q  229 ccatgaaact 238  Q
    ||||||||||    
T  17420246 ccatgaaact 17420255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 19727142 - 19727034
Alignment:
Q  1 ctacaaccgtcgcgttgagccccgtaagaa-ctttgggaaatacggttttcccgttcatctcagttaatttacactcatgatctcgaactcttctctctc 99  Q
    |||||||||||||| ||||||||||||||| ||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| |||||||||    
T  19727142 ctacaaccgtcgcggtgagccccgtaagaaactttgggaaatacggctttctcgttcatctcagttaatttacactcatgatctcgaacttttctctctc 19727043  T
Q  100 accccatac 108  Q
    |||||||||    
T  19727042 accccatac 19727034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 6821952 - 6822059
Alignment:
Q  1 ctacaaccgtcgcgttgagccccgtaagaactttgggaaatacggttttcccgttcatctcagttaatttacactcatgatctcgaactcttctctctca 100  Q
    |||||||||||||| ||| ||||  | |||||||||||||||||  ||||||||||||||||||||||||||| |||||||||| |||||||||||||||    
T  6821952 ctacaaccgtcgcggtgaaccccaaacgaactttgggaaatacgactttcccgttcatctcagttaatttacattcatgatctcaaactcttctctctca 6822051  T
Q  101 ccccatac 108  Q
    ||||||||    
T  6822052 ccccatac 6822059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 28 - 108
Target Start/End: Complemental strand, 3575619 - 3575540
Alignment:
Q  28 gaactttgggaaatacggttttcccgttcatctcagttaatttacactcatgatctcgaactcttctctctcaccccatac 108  Q
    |||||||| ||||||||| ||||| ||||||||||||| |||||| || ||||||||||||||||||||||||||||||||    
T  3575619 gaactttgagaaatacggctttcctgttcatctcagtttatttacgct-atgatctcgaactcttctctctcaccccatac 3575540  T

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Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 34 - 107
Target Start/End: Original strand, 40275198 - 40275271
Alignment:
Q  34 tgggaaatacggttttcccgttcatctcagttaatttacactcatgatctcgaactcttctctctcaccccata 107  Q
    |||||||||||| ||||| ||||||| || ||| ||||||||||||| ||||||||||| || |||||||||||    
T  40275198 tgggaaatacgggtttccggttcatcacaattattttacactcatgacctcgaactcttttccctcaccccata 40275271  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 233 - 263
Target Start/End: Original strand, 17422063 - 17422093
Alignment:
Q  233 gaaactaatagctatgttgatcttgcttctg 263  Q
    |||||||||||||||||||||||||||||||    
T  17422063 gaaactaatagctatgttgatcttgcttctg 17422093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 96; Significance: 4e-47; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 143644 - 143751
Alignment:
Q  1 ctacaaccgtcgcgttgagccccgtaagaactttgggaaatacggttttcccgttcatctcagttaatttacactcatgatctcgaactcttctctctca 100  Q
    |||||||||||||| |||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  143644 ctacaaccgtcgcggtgagccccgtaagaactttgggaaatacggatttccccttcatctcagttaatttacactcatgatctcgaactcttctctctca 143743  T
Q  101 ccccatac 108  Q
    ||||||||    
T  143744 ccccatac 143751  T

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Target: scaffold0061 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 16234 - 16127
Alignment:
Q  1 ctacaaccgtcgcgttgagccccgtaagaactttgggaaatacggttttcccgttcatctcagttaatttacactcatgatctcgaactcttctctctca 100  Q
    |||||||||||||| | ||||||| | ||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  16234 ctacaaccgtcgcggtaagccccgaatgaactttggaaaatacggctttcccgttcaactcagttaatttacactcatgatctcgaactcttctctctca 16135  T
Q  101 ccccatac 108  Q
    ||||||||    
T  16134 ccccatac 16127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 25292 - 25185
Alignment:
Q  1 ctacaaccgtcgcgttgagccccgtaagaactttgggaaatacggttttcccgttcatctcagttaatttacactcatgatctcgaactcttctctctca 100  Q
    |||||||||||||| | ||||||| | ||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  25292 ctacaaccgtcgcggtaagccccgaatgaactttggaaaatacggctttcccgttcaactcagttaatttacactcatgatctcgaactcttctctctca 25193  T
Q  101 ccccatac 108  Q
    ||||||||    
T  25192 ccccatac 25185  T

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Target: chr7 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 16067628 - 16067522
Alignment:
Q  1 ctacaaccgtcgcgttgagccccgtaagaactttgggaaatacggttttcccgttcatctcagttaatttacactcatgatctcgaactcttctctctca 100  Q
    |||||||||||||| |||||||||||||||||||||||||||| | |||||||||||||| |||| ||||||||||||||||||||||||||||||||||    
T  16067628 ctacaaccgtcgcggtgagccccgtaagaactttgggaaatacagctttcccgttcatcttagtt-atttacactcatgatctcgaactcttctctctca 16067530  T
Q  101 ccccatac 108  Q
     |||||||    
T  16067529 acccatac 16067522  T

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Target: scaffold0170 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold0170
Description:

Target: scaffold0170; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 18239 - 18346
Alignment:
Q  1 ctacaaccgtcgcgttgagccccgtaagaactttgggaaatacggttttcccgttcatctcagttaatttacactcatgatctcgaactcttctctctca 100  Q
    |||||||||||||| ||||||||| | |||||||| ||||||  | |||||| || |||||||||||||||||||||||||||||||||||||| |||||    
T  18239 ctacaaccgtcgcggtgagccccgaatgaactttgagaaatatagctttcccattaatctcagttaatttacactcatgatctcgaactcttctttctca 18338  T
Q  101 ccccatac 108  Q
    ||||||||    
T  18339 ccccatac 18346  T

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Target: chr5 (Bit Score: 65; Significance: 1e-28; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 28 - 112
Target Start/End: Original strand, 19020764 - 19020848
Alignment:
Q  28 gaactttgggaaatacggttttcccgttcatctcagttaatttacactcatgatctcgaactcttctctctcaccccatacttgg 112  Q
    ||||||||  |||||||| ||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||    
T  19020764 gaactttgaaaaatacggctttcccgttcatctcagttaatttatactcatgatctcaaactcttctctctcaccccatacttgg 19020848  T

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Target: chr5; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 4 - 108
Target Start/End: Original strand, 25792379 - 25792482
Alignment:
Q  4 caaccgtcgcgttgagccccgtaagaactttgggaaatacggttttcccgttcatctcagttaatttacactcatgatctcgaactcttctctctcaccc 103  Q
    ||||||| ||| || |||||| | ||||||||| |||||||| || ||||||||||||| ||||||||||||||||||||||||||||||||||| ||||    
T  25792379 caaccgttgcgatgggccccgaatgaactttggaaaatacggctt-cccgttcatctcaattaatttacactcatgatctcgaactcttctctcttaccc 25792477  T
Q  104 catac 108  Q
    |||||    
T  25792478 catac 25792482  T

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Target: chr5; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 25755873 - 25755768
Alignment:
Q  1 ctacaaccgtcgcgttgagccccgtaagaactttgggaaatacggttttcccgttcatctcagttaatttacactcatgatctcgaactcttctctctca 100  Q
    ||||||||||||||  | |||||| | ||||||||| |||||||| || ||||||||||||| ||||||||||||||||||||||||||||||||| | |    
T  25755873 ctacaaccgtcgcgacg-gccccgaatgaactttggaaaatacggctt-cccgttcatctcaattaatttacactcatgatctcgaactcttctctttga 25755776  T
Q  101 ccccatac 108  Q
    ||||||||    
T  25755775 ccccatac 25755768  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 108
Target Start/End: Complemental strand, 25931830 - 25931776
Alignment:
Q  54 ttcatctcagttaatttacactcatgatctcgaactcttctctctcaccccatac 108  Q
    |||||| || ||| ||||||||||||  |||||||||||||| ||||||||||||    
T  25931830 ttcatcccaattattttacactcatgtactcgaactcttctccctcaccccatac 25931776  T

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Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 28 - 108
Target Start/End: Complemental strand, 24315834 - 24315754
Alignment:
Q  28 gaactttgggaaatacggttttcccgttcatctcagttaatttacactcatgatctcgaactcttctctctcaccccatac 108  Q
    ||||||||| |||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  24315834 gaactttggaaaatacgactttcccgttcatctcagttaatttacactcatgatctcgaactcttctctctcactccatac 24315754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 28 - 104
Target Start/End: Complemental strand, 23246495 - 23246419
Alignment:
Q  28 gaactttgggaaatacggttttcccgttcatctcagttaatttacactcatgatctcgaactcttctctctcacccc 104  Q
    ||||||||||||||| || |||||||||||||||| ||||||||||||| |||||||||| ||||||||| ||||||    
T  23246495 gaactttgggaaataaggctttcccgttcatctcaattaatttacactcgtgatctcgaaatcttctctcacacccc 23246419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 34 - 108
Target Start/End: Complemental strand, 20183183 - 20183109
Alignment:
Q  34 tgggaaatacggttttcccgttcatctcagttaatttacactcatgatctcgaactcttctctctcaccccatac 108  Q
    ||||||||||  |||||||||||||| || |||| ||||||||||||||| ||||||||||||||||||||||||    
T  20183183 tgggaaatacaattttcccgttcatcccatttaaattacactcatgatcttgaactcttctctctcaccccatac 20183109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 47 - 106
Target Start/End: Complemental strand, 7902392 - 7902333
Alignment:
Q  47 tttcccgttcatctcagttaatttacactcatgatctcgaactcttctctctcaccccat 106  Q
    |||||||||| || || | | ||||||||||||  |||||||||||||||||||||||||    
T  7902392 tttcccgttcgtcacaatcattttacactcatgtactcgaactcttctctctcaccccat 7902333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 68 - 117
Target Start/End: Original strand, 22522195 - 22522244
Alignment:
Q  68 tttacactcatgatctcgaactcttctctctcaccccatacttggtttga 117  Q
    |||| |||||||||||| |||||||||||||||  |||||| ||||||||    
T  22522195 tttatactcatgatctcaaactcttctctctcaatccatacctggtttga 22522244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0408 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: scaffold0408
Description:

Target: scaffold0408; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 15543 - 15650
Alignment:
Q  1 ctacaaccgtcgcgttgagccccgtaagaactttgggaaatacggttttcccgttcatctcagttaatttacactcatgatctcgaactcttctctctca 100  Q
    ||||| |||||| | ||||||||| | ||||||||  |||||||  |||||||||| ||||| |||||||||||||||||||||||||||||||||||||    
T  15543 ctacatccgtcgtggtgagccccgaatgaactttgaaaaatacgactttcccgttcttctcaattaatttacactcatgatctcgaactcttctctctca 15642  T
Q  101 ccccatac 108  Q
    ||||||||    
T  15643 ccccatac 15650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 64; Significance: 5e-28; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 14747108 - 14747215
Alignment:
Q  1 ctacaaccgtcgcgttgagccccgtaagaactttgggaaatacggttttcccgttcatctcagttaatttacactcatgatctcgaactcttctctctca 100  Q
    ||||| |||||| | ||||||||| | ||||||||  |||||||  |||||||||| ||||| |||||||||||||||||||||||||||||||||||||    
T  14747108 ctacatccgtcgtggtgagccccgaatgaactttgaaaaatacgactttcccgttcttctcaattaatttacactcatgatctcgaactcttctctctca 14747207  T
Q  101 ccccatac 108  Q
    ||||||||    
T  14747208 ccccatac 14747215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 29 - 108
Target Start/End: Original strand, 7848984 - 7849064
Alignment:
Q  29 aactttgggaaatacggttttcccgttcatctcagtt-aatttacactcatgatctcgaactcttctctctcaccccatac 108  Q
    ||||||||||||||||  |||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  7848984 aactttgggaaatacgactttccccttcatctcagtttaatttacactcatgatctcgaactcttctctctcaccccatac 7849064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 8886403 - 8886511
Alignment:
Q  1 ctacaaccgtcgcgttgagccccgtaagaactttgggaaatacggttttccc-gttcatctcagttaatttacactcatgatctcgaactcttctctctc 99  Q
    ||||||||||| ||  || ||||| | |||||||||||||| ||| |||||| ||||||||||||||||||| ||| |||||||||||||||||||||||    
T  8886403 ctacaaccgtcacgacgaaccccgaatgaactttgggaaattcggctttccccgttcatctcagttaatttatactaatgatctcgaactcttctctctc 8886502  T
Q  100 accccatac 108  Q
    ||| |||||    
T  8886503 accacatac 8886511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 17 - 108
Target Start/End: Complemental strand, 22395021 - 22394930
Alignment:
Q  17 gagccccgtaagaactttgggaaatacggttttcccgttcatctcagttaatttacactcatgatctcgaactcttctctctcaccccatac 108  Q
    |||||||| | |||||||||||||||  ||||||| ||| |||||| ||||||||||||||||||||||||||||| || ||||||||||||    
T  22395021 gagccccgaatgaactttgggaaatattgttttcctgtttatctcaattaatttacactcatgatctcgaactcttttccctcaccccatac 22394930  T

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Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 47 - 117
Target Start/End: Original strand, 23662867 - 23662939
Alignment:
Q  47 tttcccgttcatctcagttaatttacactcatgatctcgaactct--tctctctcaccccatacttggtttga 117  Q
    ||||| |||||||| ||||||||||||||||||||||| ||||||  ||||||||||||||||| ||| ||||    
T  23662867 tttccggttcatcttagttaatttacactcatgatctcaaactcttctctctctcaccccatacctggattga 23662939  T

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Target: scaffold1043 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold1043
Description:

Target: scaffold1043; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 28 - 98
Target Start/End: Complemental strand, 70 - 1
Alignment:
Q  28 gaactttgggaaatacggttttcccgttcatctcagttaatttacactcatgatctcgaactcttctctct 98  Q
    |||||||||||||||||  |||||| ||||||||| |||||||||||||||||||||||||||||||||||    
T  70 gaactttgggaaatacgactttcccattcatctca-ttaatttacactcatgatctcgaactcttctctct 1  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 97
Target Start/End: Complemental strand, 11281615 - 11281569
Alignment:
Q  51 ccgttcatctcagttaatttacactcatgatctcgaactcttctctc 97  Q
    |||||||||||| |||||||| || |||| |||||||||||||||||    
T  11281615 ccgttcatctcatttaatttatacccatggtctcgaactcttctctc 11281569  T

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