View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8109_low_3 (Length: 602)
Name: NF8109_low_3
Description: NF8109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8109_low_3 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 511; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 511; E-Value: 0
Query Start/End: Original strand, 14 - 602
Target Start/End: Complemental strand, 29415852 - 29415265
Alignment:
| Q |
14 |
gtttcgtgttgtatgaaatttgttatataactattagatcacagtcctcatacaagaaaaactatgacagattaaatatgccagggcctcctatatcagt |
113 |
Q |
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| T |
29415852 |
gtttcgtgttgtatgaaatttgttatataactattagatcacagtcctcatacaagaaaaactatgacagattaaatatgccagggcctcctatatcagt |
29415753 |
T |
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| Q |
114 |
tatttggcatctcactttttagaatccacaatctgccaaagactcctacatcacaaagaaatgttatcagtgtgtcatttagttacatgcatcttgcatg |
213 |
Q |
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| T |
29415752 |
tatttggcatctcactttttagaattcacaatctgccaaagactcctacatcacaaagaaatgttatcagtgtgtcatttagttacatgcatcttgcatg |
29415653 |
T |
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| Q |
214 |
acaacatcattactgttaaatatgtgtgtgtcagatccttgtgagaaaacacaatagatacaacattttgctaatccttatgatggagtgtgccagatct |
313 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29415652 |
acaacatcattactgttaaatgtgtgtgtgtcagatccttgtgagaaaacacaatagatacaacattttgctaatccttatgatggagtgtgccagatct |
29415553 |
T |
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| Q |
314 |
ttaggcttgttgtgatcgaaactaattgaccaaagtaggagtggaattatttcaaataaacaattgaaagagtttaacattttatactgaattaatcttc |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
29415552 |
ttaggcttgttgtgatcgaaactaattgaccaaagtaggagtggaattatgtcaaataaacaattgaaagagtttaacattttatactgaattaatattc |
29415453 |
T |
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| Q |
414 |
caaagtccaatacaaggaattagcatcccctcctttgatctcttcgattttacggctaagagaatcctgattttgtagtgtaaatgtgtaattgtatttt |
513 |
Q |
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||| |||| ||||||||| | ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
29415452 |
caagtcccaacacaaggaatcatcatcccctcctttgatctcttcgattttaaggctaagagaaacctgattttgtagtgtaaatgtgtaattgtatttt |
29415353 |
T |
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| Q |
514 |
atattgttgatgtcaaaccnnnnnnnttgtcatttttgaagattaaaatggatgtggtgattgaaaagaatatcattaacgattaaacc |
602 |
Q |
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| T |
29415352 |
atattgttgatgtcaaacc-aaaaaattgtcatttttgaagattaaaatggatgtggtgattgaaaagaatatcattaacgagtaaacc |
29415265 |
T |
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