View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8109_low_30 (Length: 250)
Name: NF8109_low_30
Description: NF8109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8109_low_30 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 250
Target Start/End: Original strand, 48557179 - 48557427
Alignment:
| Q |
1 |
ttgtctcagacaagaaaaaacttcactaatcctctgctttttagtagttttatccccgtcnnnnnnntactttgcaaatatttttagaaggttttattat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
48557179 |
ttgtctcagacaagaaaaaacttcactaatcctctgcttttcagtagttttatccccgtcaaaaaaatactttgcaaatatttttagaaggttttattat |
48557278 |
T |
|
| Q |
101 |
tttgttggttcttgaaatatatcttcaaaatattacagatttaattccaactaaaacttaagagagcatctattagaaaagatctaagtctcacatcgga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| |||||||||||||||||| ||||||||||||||||| |
|
|
| T |
48557279 |
tttgttggttcttgaaatatatcttcaaaatattacagatttaatt-caactaagacttaagacagcatctattagaaaagacctaagtctcacatcgga |
48557377 |
T |
|
| Q |
201 |
tatattagattctagataagagtttatataactgagacactcatcttaca |
250 |
Q |
| |
|
||||||||| ||||||||||||||||||||| |||||| |||||||||| |
|
|
| T |
48557378 |
tatattagactctagataagagtttatataatagagacattcatcttaca |
48557427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University