View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8109_low_35 (Length: 240)
Name: NF8109_low_35
Description: NF8109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8109_low_35 |
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Alignment Details
Target: chr7 (Bit Score: 170; Significance: 2e-91; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 18 - 225
Target Start/End: Complemental strand, 31291116 - 31290913
Alignment:
| Q |
18 |
cctttcacatgcaattctcctctatttaagcctatcgactcctccttattcattcaatccaacactcatattctcaatttcataaaccaaagttcatcaa |
117 |
Q |
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| T |
31291116 |
cctttcacatgcaattctcctctatttaagcctatcgactcctccttattcattcaatccaacactcatattctcaatttcataaaccaaagttcatcaa |
31291017 |
T |
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| Q |
118 |
aatccttacaaaccnnnnnnnttaaactctctctctcagtttcaagtttcaatttctaacacttcaaaaaccactttgaaaactgatcaaagaaccaatc |
217 |
Q |
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|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31291016 |
aatccttacaaaccaaaaaaattaaa----ctctctcagtttcaagtttcaatttctaacacttcaaaaaccactttgaaaactgatcaaagaaccaatc |
31290921 |
T |
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| Q |
218 |
tttttcat |
225 |
Q |
| |
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|||||||| |
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| T |
31290920 |
tttttcat |
31290913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 22 - 118
Target Start/End: Original strand, 39838685 - 39838784
Alignment:
| Q |
22 |
tcacatgcaattctcctctatttaagcctatcgactcctcct---tattcattcaatccaacactcatattctcaatttcataaaccaaagttcatcaaa |
118 |
Q |
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|||||||||||||||||||||||||||| || ||||||||| ||||||||||||||| ||||| ||| |||||| |||||||||| ||||||||| |
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| T |
39838685 |
tcacatgcaattctcctctatttaagcccttcaactcctcctctttattcattcaatccattactcacattatcaattctataaaccaaacttcatcaaa |
39838784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 22 - 119
Target Start/End: Original strand, 31289665 - 31289765
Alignment:
| Q |
22 |
tcacatgcaattctcctctatttaagcctatcgactc---ctccttattcattcaatccaacactcatattctcaatttcataaaccaaagttcatcaaa |
118 |
Q |
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|||| |||||||||||| ||||||| || || |||| || |||||||||| ||||||||||||| |||||||||| |||||| |||||||||||||| |
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| T |
31289665 |
tcacttgcaattctcctttatttaaacccttcaactccttcttcttattcattgaatccaacactcacattctcaattacataaatcaaagttcatcaaa |
31289764 |
T |
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| Q |
119 |
a |
119 |
Q |
| |
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| |
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| T |
31289765 |
a |
31289765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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