View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8109_low_36 (Length: 239)
Name: NF8109_low_36
Description: NF8109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8109_low_36 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 1699246 - 1699468
Alignment:
| Q |
1 |
tgtaatatcttttttcttttattataaataaatcaagttaactgttctgctaatatttttgttcatcgtggtactagtacaaactggccttagagacaac |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1699246 |
tgtaatatcttttttcttttattataaataaatcaagttaattgttctgctaatatttttgttcatcgtggtactagtacaaactggccttagagacaac |
1699345 |
T |
|
| Q |
101 |
aaatgtctaggtttaaacaaaccatgtgcttgatagcttatggactaatacatgtcaatcctacgaagattaaatatatatgccttaatagattcgacac |
200 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
1699346 |
aaatgtctaggtttaaacagaccatgtgcttgatagcttatggactaagacatgtcaatcctacgaagattaaatatatatgccttaatagatttgacac |
1699445 |
T |
|
| Q |
201 |
ttggttgactacagacccgtaag |
223 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
1699446 |
ttggttgactacagacccgtaag |
1699468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University