View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8109_low_38 (Length: 238)
Name: NF8109_low_38
Description: NF8109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8109_low_38 |
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| [»] chr4 (6 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 162; Significance: 1e-86; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 12 - 238
Target Start/End: Complemental strand, 39522146 - 39521920
Alignment:
| Q |
12 |
atcatcaatttcataacttnnnnnnnntcatcaaacaaacacaattttcctctctcactatgtcaacctttcacttccacacaattcaacgctctatctt |
111 |
Q |
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| T |
39522146 |
atcatcaatttcataacttaaaaaaaatcatcaaacaaacacaattttcctctctcaccatgtcaacctttcacttccacacaattcaacgctctatctt |
39522047 |
T |
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| Q |
112 |
tctacttgcnnnnnnncttcaattctcatcattacaattcccctcactcggatacgatcctcaagacacatacttcatcaattgtggatcagatgtcgac |
211 |
Q |
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| T |
39522046 |
tctccttgctttttttcttcaattctcatcattacaattcccctcactcggatacgatcctcaagacacatacttcatcaattgtggatcagatatcgac |
39521947 |
T |
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| Q |
212 |
gtggatgaaaataacaaccattatatt |
238 |
Q |
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||| ||||||||||||||| ||||||| |
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| T |
39521946 |
gtgaatgaaaataacaacctttatatt |
39521920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 128 - 238
Target Start/End: Complemental strand, 39544820 - 39544710
Alignment:
| Q |
128 |
cttcaattctcatcattacaattcccctcactcggatacgatcctcaagacacatacttcatcaattgtggatcagatgtcgacgtggatgaaaataaca |
227 |
Q |
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||||||||| ||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| ||||||||| | |||||| |||||||||||| |
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| T |
39544820 |
cttcaattcgcatcattacaatttccctcactcggatacgatcaccaagacacatacttcatcaattgcggatcagatattgacgtgaatgaaaataaca |
39544721 |
T |
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| Q |
228 |
accattatatt |
238 |
Q |
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| T |
39544720 |
acctttatatt |
39544710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 128 - 238
Target Start/End: Complemental strand, 39576675 - 39576565
Alignment:
| Q |
128 |
cttcaattctcatcattacaattcccctcactcggatacgatcctcaagacacatacttcatcaattgtggatcagatgtcgacgtggatgaaaataaca |
227 |
Q |
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| T |
39576675 |
cttcaattctcatcactacacttccctgcactcggatacgatcatcaagagacatacttcatcaattgtggatcagatatcgacgtgaatgaaaataaga |
39576576 |
T |
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| Q |
228 |
accattatatt |
238 |
Q |
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| T |
39576575 |
atctttatatt |
39576565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 129 - 205
Target Start/End: Complemental strand, 39525529 - 39525453
Alignment:
| Q |
129 |
ttcaattctcatcattacaattcccctcactcggatacgatcctcaagacacatacttcatcaattgtggatcagat |
205 |
Q |
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| T |
39525529 |
ttcaattctcatcattatacttcccctcgctcggatacgatgaacaagacatatacttcatcagttgtggatcagat |
39525453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 128 - 205
Target Start/End: Complemental strand, 39581927 - 39581850
Alignment:
| Q |
128 |
cttcaattctcatcattacaattcccctcactcggatacgatcctcaagacacatacttcatcaattgtggatcagat |
205 |
Q |
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| T |
39581927 |
cttcaattctcatcattacagttcgcctcacttggatacgatgaccaagacatatacttcatcagttgtggataagat |
39581850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 128 - 205
Target Start/End: Complemental strand, 39581216 - 39581136
Alignment:
| Q |
128 |
cttcaattctcatcattacaattcccctcactcggat---acgatcctcaagacacatacttcatcaattgtggatcagat |
205 |
Q |
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||||||||||||||||||||||| |||| ||||||| | |||| ||| ||||||||||||||||||| ||||||||| |
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| T |
39581216 |
cttcaattctcatcattacaattttcctcgctcggattatataatccccaacacacatacttcatcaattgcggatcagat |
39581136 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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