View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8109_low_4 (Length: 566)

Name: NF8109_low_4
Description: NF8109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8109_low_4
NF8109_low_4
[»] chr8 (8 HSPs)
chr8 (1-216)||(35029183-35029398)
chr8 (1-214)||(30426400-30426613)
chr8 (56-164)||(5802131-5802239)
chr8 (80-164)||(12331896-12331980)
chr8 (88-213)||(195377-195502)
chr8 (88-213)||(310214-310339)
chr8 (88-213)||(36492429-36492554)
chr8 (89-137)||(4310877-4310925)
[»] chr3 (8 HSPs)
chr3 (1-216)||(52251088-52251303)
chr3 (56-214)||(19548450-19548608)
chr3 (80-164)||(17700276-17700360)
chr3 (85-214)||(48929772-48929901)
chr3 (116-162)||(7163576-7163622)
chr3 (88-212)||(6824869-6824993)
chr3 (85-137)||(6985947-6985999)
chr3 (85-137)||(8129996-8130048)
[»] chr5 (12 HSPs)
chr5 (247-421)||(40925565-40925739)
chr5 (483-550)||(40925436-40925503)
chr5 (80-164)||(9724697-9724781)
chr5 (88-213)||(41590145-41590269)
chr5 (61-162)||(21077145-21077246)
chr5 (88-213)||(4298276-4298401)
chr5 (67-162)||(25671979-25672074)
chr5 (40-134)||(27297398-27297492)
chr5 (48-101)||(19852739-19852792)
chr5 (85-137)||(35837254-35837306)
chr5 (88-129)||(18597893-18597934)
chr5 (89-137)||(36255828-36255876)
[»] scaffold0061 (1 HSPs)
scaffold0061 (5-216)||(64603-64814)
[»] scaffold0017 (1 HSPs)
scaffold0017 (5-216)||(133818-134029)
[»] chr2 (8 HSPs)
chr2 (56-214)||(43310275-43310433)
chr2 (56-214)||(26146231-26146389)
chr2 (52-164)||(10688575-10688687)
chr2 (67-160)||(43724162-43724255)
chr2 (85-137)||(6727820-6727872)
chr2 (85-137)||(13415728-13415780)
chr2 (88-137)||(27951462-27951511)
chr2 (89-137)||(2207865-2207913)
[»] chr6 (4 HSPs)
chr6 (56-214)||(6994946-6995104)
chr6 (85-162)||(34434309-34434386)
chr6 (56-162)||(10362149-10362255)
chr6 (85-137)||(15602369-15602421)
[»] chr7 (5 HSPs)
chr7 (52-214)||(25019282-25019444)
chr7 (52-216)||(41805721-41805885)
chr7 (80-216)||(30573306-30573442)
chr7 (85-137)||(6343683-6343735)
chr7 (89-137)||(39694520-39694568)
[»] chr1 (3 HSPs)
chr1 (1-209)||(36685805-36686012)
chr1 (67-214)||(45270268-45270415)
chr1 (85-123)||(41150059-41150097)
[»] scaffold0016 (1 HSPs)
scaffold0016 (92-214)||(27834-27956)
[»] scaffold0003 (1 HSPs)
scaffold0003 (52-216)||(367017-367181)
[»] chr4 (4 HSPs)
chr4 (1-135)||(48117329-48117463)
chr4 (80-164)||(30821753-30821837)
chr4 (85-137)||(40688112-40688164)
chr4 (85-136)||(22877509-22877560)
[»] scaffold0750 (1 HSPs)
scaffold0750 (85-137)||(6096-6148)
[»] scaffold0124 (1 HSPs)
scaffold0124 (85-137)||(22458-22510)
[»] scaffold0036 (1 HSPs)
scaffold0036 (88-137)||(44852-44901)


Alignment Details
Target: chr8 (Bit Score: 196; Significance: 1e-106; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 35029183 - 35029398
Alignment:
Q  1 gcaccctaacaaacagcccacatccgcaggcaaaagaacaccgcgacccagcagatttgaccttgtaggcaaccgattctttaccaacctccaagcaaaa 100  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35029183 gcaccctaacaaacagcccgcatccgcaggcaaaagaacaccgcgacccagcagatttgaccttgtaggcaaccgattctttaccaacctccaagcaaaa 35029282  T
Q  101 atagaaaccttaagtggaacatgtttatgtcaaaccagggcatctgcaccttccacctgaggaaactctgaagaagtcagcaaatgataagcgctactaa 200  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |  ||||||||||||||||||||||||||||||    
T  35029283 atagaaaccttaagtggaacatgtttatgccaaaccagggcatctgcaccttccacctgaggaaacgccaaagaagtcagcaaatgataagcgctactaa 35029382  T
Q  201 ctgtataacctgcaat 216  Q
    ||||||||||||||||    
T  35029383 ctgtataacctgcaat 35029398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 30426400 - 30426613
Alignment:
Q  1 gcaccctaacaaacagcccacatccgcaggcaaaagaacaccgcgacccagcagatttgaccttgtaggcaaccgattctttaccaacctccaagcaaaa 100  Q
    ||||||||||||||| ||| ||||||||   || ||||  ||||||  || ||| |||||||| ||||||||||||| ||||||||||||||||||||||    
T  30426400 gcaccctaacaaacaacccgcatccgcatctaagagaattccgcgatgcatcaggtttgacctggtaggcaaccgatcctttaccaacctccaagcaaaa 30426499  T
Q  101 atagaaaccttaagtggaacatgtttatgtcaaaccagggcatctgcaccttccacctgaggaaactctgaagaagtcagcaaatgataagcgctactaa 200  Q
    || || ||||||||||||||||||||||| ||||| || ||||||||||| ||||||||| |||  || ||||||||||  |||||||||||| ||  ||    
T  30426500 attgagaccttaagtggaacatgtttatgccaaactagagcatctgcaccatccacctgaagaatgtccgaagaagtcaaaaaatgataagcgttatgaa 30426599  T
Q  201 ctgtataacctgca 214  Q
    |||| |||||||||    
T  30426600 ctgtgtaacctgca 30426613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 56 - 164
Target Start/End: Complemental strand, 5802239 - 5802131
Alignment:
Q  56 tttgaccttgtaggcaaccgattctttaccaacctccaagcaaaaatagaaaccttaagtggaacatgtttatgtcaaaccagggcatctgcaccttcca 155  Q
    ||||||||||||||||||| ||| ||||||||||||||||||||||| || ||||||||||||||||||||||| ||||| || ||||||||||||||||    
T  5802239 tttgaccttgtaggcaacctattttttaccaacctccaagcaaaaattgagaccttaagtggaacatgtttatgccaaactagagcatctgcaccttcca 5802140  T
Q  156 cctgaggaa 164  Q
    |||||||||    
T  5802139 cctgaggaa 5802131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 80 - 164
Target Start/End: Original strand, 12331896 - 12331980
Alignment:
Q  80 tttaccaacctccaagcaaaaatagaaaccttaagtggaacatgtttatgtcaaaccagggcatctgcaccttccacctgaggaa 164  Q
    |||||||||| |||||||||||| || |||||||||||||||||||| || ||||| || |||||||||||||||||||||||||    
T  12331896 tttaccaaccaccaagcaaaaattgagaccttaagtggaacatgtttgtgccaaacaagagcatctgcaccttccacctgaggaa 12331980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 88 - 213
Target Start/End: Original strand, 195377 - 195502
Alignment:
Q  88 cctccaagcaaaaatagaaaccttaagtggaacatgtttatgtcaaaccagggcatctgcaccttccacctgaggaaactctgaagaagtcagcaaatga 187  Q
    ||||||||||||||| || |||||||| |||| ||| ||||| |||||||  ||| |||||||||| || ||||| |  ||   |||||||| ||| |||    
T  195377 cctccaagcaaaaatcgagaccttaagcggaatatgattatgccaaaccaacgcagctgcaccttcgacatgagggatatcctgagaagtcaacaactga 195476  T
Q  188 taagcgctactaactgtataacctgc 213  Q
    ||||||||||| ||||||||||||||    
T  195477 taagcgctactgactgtataacctgc 195502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 88 - 213
Target Start/End: Original strand, 310214 - 310339
Alignment:
Q  88 cctccaagcaaaaatagaaaccttaagtggaacatgtttatgtcaaaccagggcatctgcaccttccacctgaggaaactctgaagaagtcagcaaatga 187  Q
    ||||||||||||||| || |||||||| |||| ||| ||||| |||||||  ||| |||||||||| || ||||| |  ||   |||||||| ||| |||    
T  310214 cctccaagcaaaaatcgagaccttaagcggaatatgattatgccaaaccaacgcagctgcaccttcgacatgagggatatcctgagaagtcaacaactga 310313  T
Q  188 taagcgctactaactgtataacctgc 213  Q
    ||||||||||| ||||||||||||||    
T  310314 taagcgctactgactgtataacctgc 310339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 88 - 213
Target Start/End: Original strand, 36492429 - 36492554
Alignment:
Q  88 cctccaagcaaaaatagaaaccttaagtggaacatgtttatgtcaaaccagggcatctgcaccttccacctgaggaaactctgaagaagtcagcaaatga 187  Q
    ||||||| ||||||| || |||||||| |||| ||| ||||| |||||||  ||| |||||||||| || ||||| |  ||   |||||||| ||| |||    
T  36492429 cctccaaacaaaaattgagaccttaagcggaatatgattatgccaaaccaacgcagctgcaccttcgacatgagggatatcctgagaagtcaacaactga 36492528  T
Q  188 taagcgctactaactgtataacctgc 213  Q
    || |||||||||||||||||||||||    
T  36492529 taggcgctactaactgtataacctgc 36492554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 89 - 137
Target Start/End: Complemental strand, 4310925 - 4310877
Alignment:
Q  89 ctccaagcaaaaatagaaaccttaagtggaacatgtttatgtcaaacca 137  Q
    ||||||||||||||||| |||||||| ||||| ||||| || |||||||    
T  4310925 ctccaagcaaaaatagacaccttaaggggaacctgtttgtgccaaacca 4310877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 168; Significance: 9e-90; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 168; E-Value: 9e-90
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 52251303 - 52251088
Alignment:
Q  1 gcaccctaacaaacagcccacatccgcaggcaaaagaacaccgcgacccagcagatttgaccttgtaggcaaccgattctttaccaacctccaagcaaaa 100  Q
    |||||||||||||||| |  |||| |||  ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52251303 gcaccctaacaaacagtctgcatctgcaaccaaaagaacaccgcgacgcagcagatttgaccttgtaggcaaccgattctttaccaacctccaagcaaaa 52251204  T
Q  101 atagaaaccttaagtggaacatgtttatgtcaaaccagggcatctgcaccttccacctgaggaaactctgaagaagtcagcaaatgataagcgctactaa 200  Q
    || |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||  || |||||||||||||||||||||||||||||||    
T  52251203 atggaaaccttaagtggaacatgtttatgccaaaccagggcatctgcaccttccacctgaggaatgtccgaagaagtcagcaaatgataagcgctactaa 52251104  T
Q  201 ctgtataacctgcaat 216  Q
    ||||||||||||||||    
T  52251103 ctgtataacctgcaat 52251088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 56 - 214
Target Start/End: Complemental strand, 19548608 - 19548450
Alignment:
Q  56 tttgaccttgtaggcaaccgattctttaccaacctccaagcaaaaatagaaaccttaagtggaacatgtttatgtcaaaccagggcatctgcaccttcca 155  Q
    ||||||||||||||||||| |||  |||||||||||||||||||||| || ||||||||||||||||||||||| ||||| || ||||||||||||||||    
T  19548608 tttgaccttgtaggcaacctatttattaccaacctccaagcaaaaattgagaccttaagtggaacatgtttatgccaaactagagcatctgcaccttcca 19548509  T
Q  156 cctgaggaaactctgaagaagtcagcaaatgataagcgctactaactgtataacctgca 214  Q
    || ||| ||  ||   || |||||| |||||||||||||| |||| |||||||||||||    
T  19548508 cccgagaaatgtcctgagtagtcagaaaatgataagcgctgctaattgtataacctgca 19548450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 80 - 164
Target Start/End: Original strand, 17700276 - 17700360
Alignment:
Q  80 tttaccaacctccaagcaaaaatagaaaccttaagtggaacatgtttatgtcaaaccagggcatctgcaccttccacctgaggaa 164  Q
    |||||||||| ||||||||| || || |||||||||||||| |||||||| ||||| || |||||||||||||||||||||||||    
T  17700276 tttaccaaccgccaagcaaatattgagaccttaagtggaacctgtttatgccaaacaagagcatctgcaccttccacctgaggaa 17700360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 85 - 214
Target Start/End: Original strand, 48929772 - 48929901
Alignment:
Q  85 caacctccaagcaaaaatagaaaccttaagtggaacatgtttatgtcaaaccagggcatctgcaccttccacctgaggaaactctgaagaagtcagcaaa 184  Q
    ||||||||||||||||||| | |||||||| ||||||||  | || |||||||  ||||| ||||| |||||||||||    ||   |||||||| ||||    
T  48929772 caacctccaagcaaaaataaagaccttaagcggaacatgaatgtgccaaaccaaagcatcagcaccatccacctgaggccgatcctgagaagtcaacaaa 48929871  T
Q  185 tgataagcgctactaactgtataacctgca 214  Q
    ||||| || || || |||||||||||||||    
T  48929872 tgataggcactcctgactgtataacctgca 48929901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 116 - 162
Target Start/End: Original strand, 7163576 - 7163622
Alignment:
Q  116 ggaacatgtttatgtcaaaccagggcatctgcaccttccacctgagg 162  Q
    |||||||||||||| |||||||  |||||||||||||||||||||||    
T  7163576 ggaacatgtttatgccaaaccaaagcatctgcaccttccacctgagg 7163622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 88 - 212
Target Start/End: Original strand, 6824869 - 6824993
Alignment:
Q  88 cctccaagcaaaaatagaaaccttaagtggaacatgtttatgtcaaaccagggcatctgcaccttccacctgaggaaactctgaagaagtcagcaaatga 187  Q
    |||| |||||||||| || |||||||| |||| ||| | ||| |||||||  |||  ||||||||| |||||||| |  ||   |||||||| ||| |||    
T  6824869 cctctaagcaaaaattgagaccttaagcggaatatgatcatgccaaaccaacgcaggtgcaccttcgacctgagggatatcctgagaagtcaacaactga 6824968  T
Q  188 taagcgctactaactgtataacctg 212  Q
    || |||||||||| |||||||||||    
T  6824969 taggcgctactaattgtataacctg 6824993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 85 - 137
Target Start/End: Original strand, 6985947 - 6985999
Alignment:
Q  85 caacctccaagcaaaaatagaaaccttaagtggaacatgtttatgtcaaacca 137  Q
    ||||||||||||||||||||| ||||| || ||||||||||| || |||||||    
T  6985947 caacctccaagcaaaaatagacaccttgaggggaacatgtttgtgccaaacca 6985999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 85 - 137
Target Start/End: Original strand, 8129996 - 8130048
Alignment:
Q  85 caacctccaagcaaaaatagaaaccttaagtggaacatgtttatgtcaaacca 137  Q
    ||||||||||||||||||||| ||||| || ||||||||||| || |||||||    
T  8129996 caacctccaagcaaaaatagacaccttgaggggaacatgtttgtgccaaacca 8130048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 167; Significance: 4e-89; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 167; E-Value: 4e-89
Query Start/End: Original strand, 247 - 421
Target Start/End: Complemental strand, 40925739 - 40925565
Alignment:
Q  247 tttgagggaattttaatagttcaaattgtgactaagttgttctaatttctcccacaagtgtcacaattattttccggaagtgaaacgaatattattcatt 346  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40925739 tttgagggaattttaatagttcaaattgtgactaagttgttctaatttctcccacaagtgtcacaattattttccggaagtgaaacgaatattattcatt 40925640  T
Q  347 tttattttgagcatcttactacatagagaggaataatttgtattattgtttggacttaaatgtcaatagagtgtg 421  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||    
T  40925639 tttattttgagcatcttactacatagagaggaatcatttgtattattgcttggacttaaatgtcaatagagtgtg 40925565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 483 - 550
Target Start/End: Complemental strand, 40925503 - 40925436
Alignment:
Q  483 gaatgtacccgagggtgtcaaattttggaatgcaagagagggttccactttttaatttttagtgatgt 550  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40925503 gaatgtacccgagggtgtcaaattttggaatgcaagagagggttccactttttaatttttagtgatgt 40925436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 80 - 164
Target Start/End: Complemental strand, 9724781 - 9724697
Alignment:
Q  80 tttaccaacctccaagcaaaaatagaaaccttaagtggaacatgtttatgtcaaaccagggcatctgcaccttccacctgaggaa 164  Q
    |||||||||| |||||||||||| || ||||||||||||||||||||||| ||||| || |||||||||||||||||| ||||||    
T  9724781 tttaccaaccgccaagcaaaaattgagaccttaagtggaacatgtttatgccaaacaagagcatctgcaccttccacccgaggaa 9724697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 88 - 213
Target Start/End: Original strand, 41590145 - 41590269
Alignment:
Q  88 cctccaagcaaaaatagaaaccttaagtggaacatgtttatgtcaaaccagggcatctgcaccttccacctgaggaaactctgaagaagtcagcaaatga 187  Q
    ||||||||||||||| || |||||||| |||| ||| ||||| |||||||  ||| |||||||||| || |||||| |  ||| |||||||| ||| |||    
T  41590145 cctccaagcaaaaatcgagaccttaagcggaatatgattatgccaaaccaacgcagctgcaccttcgacatgaggatatcctg-agaagtcaacaattga 41590243  T
Q  188 taagcgctactaactgtataacctgc 213  Q
    ||||||||||| ||||||||||||||    
T  41590244 taagcgctactgactgtataacctgc 41590269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 61 - 162
Target Start/End: Original strand, 21077145 - 21077246
Alignment:
Q  61 ccttgtaggcaaccgattctttaccaacctccaagcaaaaatagaaaccttaagtggaacatgtttatgtcaaaccagggcatctgcaccttccacctga 160  Q
    |||||||||||||||||| | || ||||||||| |||||||| || || || |||| |||||||||||| ||||| || || | ||||||||||||||||    
T  21077145 ccttgtaggcaaccgattttgtaacaacctccatgcaaaaattgagactttgagtgaaacatgtttatgccaaactagagcctttgcaccttccacctga 21077244  T
Q  161 gg 162  Q
    ||    
T  21077245 gg 21077246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 88 - 213
Target Start/End: Complemental strand, 4298401 - 4298276
Alignment:
Q  88 cctccaagcaaaaatagaaaccttaagtggaacatgtttatgtcaaaccagggcatctgcaccttccacctgaggaaactctgaagaagtcagcaaatga 187  Q
    ||||||||||||||| || |||||||| |||| ||| ||||| |||||||  ||| |||||||||| || ||||| |  ||   |||||||| ||| |||    
T  4298401 cctccaagcaaaaattgagaccttaagcggaatatgattatgccaaaccaacgcaactgcaccttcgacatgagggatatcctgagaagtcaacaactga 4298302  T
Q  188 taagcgctactaactgtataacctgc 213  Q
    || |||||||| ||||||||||||||    
T  4298301 taggcgctactgactgtataacctgc 4298276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 67 - 162
Target Start/End: Original strand, 25671979 - 25672074
Alignment:
Q  67 aggcaaccgattctttaccaacctccaagcaaaaatagaaaccttaagtggaacatgtttatgtcaaaccagggcatctgcaccttccacctgagg 162  Q
    |||||| || ||||| | ||||||||||||||||||||| |||||||| | |||||| || || |||||||  ||||| ||||| |||||||||||    
T  25671979 aggcaaacggttcttcagcaacctccaagcaaaaatagagaccttaagcgtaacatggttgtgccaaaccaaagcatcagcaccatccacctgagg 25672074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 40 - 134
Target Start/End: Original strand, 27297398 - 27297492
Alignment:
Q  40 accgcgacccagcagatttgaccttgtaggcaaccgattctttaccaacctccaagcaaaaatagaaaccttaagtggaacatgtttatgtcaaa 134  Q
    ||||||| |||| |||||||| ||||||||||||||||||   |  |||| ||||||||||||||| ||||| || ||||| ||| |||| ||||    
T  27297398 accgcgatccagaagatttgatcttgtaggcaaccgattccacaataaccaccaagcaaaaatagacaccttcagaggaacttgtgtatgccaaa 27297492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 48 - 101
Target Start/End: Original strand, 19852739 - 19852792
Alignment:
Q  48 ccagcagatttgaccttgtaggcaaccgattctttaccaacctccaagcaaaaa 101  Q
    |||| ||||||||||||||||||||||||||||  |  ||||||||||||||||    
T  19852739 ccagaagatttgaccttgtaggcaaccgattctgcaataacctccaagcaaaaa 19852792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 85 - 137
Target Start/End: Original strand, 35837254 - 35837306
Alignment:
Q  85 caacctccaagcaaaaatagaaaccttaagtggaacatgtttatgtcaaacca 137  Q
    ||||||||||||||||||||| |||||||| ||||| ||||| || |||||||    
T  35837254 caacctccaagcaaaaatagacaccttaagcggaacctgtttgtgccaaacca 35837306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 88 - 129
Target Start/End: Complemental strand, 18597934 - 18597893
Alignment:
Q  88 cctccaagcaaaaatagaaaccttaagtggaacatgtttatg 129  Q
    ||||||||||| |||||||||||| || ||||||||||||||    
T  18597934 cctccaagcaagaatagaaacctttagcggaacatgtttatg 18597893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 89 - 137
Target Start/End: Original strand, 36255828 - 36255876
Alignment:
Q  89 ctccaagcaaaaatagaaaccttaagtggaacatgtttatgtcaaacca 137  Q
    ||||||||||||||||| |||||||| ||||| ||||| || |||||||    
T  36255828 ctccaagcaaaaatagacaccttaaggggaacctgtttgtgccaaacca 36255876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 128; Significance: 7e-66; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 5 - 216
Target Start/End: Complemental strand, 64814 - 64603
Alignment:
Q  5 cctaacaaacagcccacatccgcaggcaaaagaacaccgcgacccagcagatttgaccttgtaggcaaccgattctttaccaacctccaagcaaaaatag 104  Q
    ||||||||||| | | |||||| |  ||| |||||| |||||| || ||||||||||||||||||||||| ||||||||||||||||||| | ||||| |    
T  64814 cctaacaaacaactcgcatccgaatccaagagaacatcgcgacgcatcagatttgaccttgtaggcaacctattctttaccaacctccaaacgaaaattg 64715  T
Q  105 aaaccttaagtggaacatgtttatgtcaaaccagggcatctgcaccttccacctgaggaaactctgaagaagtcagcaaatgataagcgctactaactgt 204  Q
    | ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||   || |||||||||||||||||||||||||||||||||||    
T  64714 agaccttaagtggaacatgtttatgccaaactagggcatctgcaccttccacctgaggagtgtccgaagaagtcagcaaatgataagcgctactaactgt 64615  T
Q  205 ataacctgcaat 216  Q
    ||||||||||||    
T  64614 ataacctgcaat 64603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 128; Significance: 7e-66; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 5 - 216
Target Start/End: Original strand, 133818 - 134029
Alignment:
Q  5 cctaacaaacagcccacatccgcaggcaaaagaacaccgcgacccagcagatttgaccttgtaggcaaccgattctttaccaacctccaagcaaaaatag 104  Q
    ||||||||||| | | |||||| |  ||| |||||| |||||| || ||||||||||||||||||||||| ||||||||||||||||||| | ||||| |    
T  133818 cctaacaaacaactcgcatccgaatccaagagaacatcgcgacgcatcagatttgaccttgtaggcaacctattctttaccaacctccaaacgaaaattg 133917  T
Q  105 aaaccttaagtggaacatgtttatgtcaaaccagggcatctgcaccttccacctgaggaaactctgaagaagtcagcaaatgataagcgctactaactgt 204  Q
    | ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||   || |||||||||||||||||||||||||||||||||||    
T  133918 agaccttaagtggaacatgtttatgccaaactagggcatctgcaccttccacctgaggagtgtccgaagaagtcagcaaatgataagcgctactaactgt 134017  T
Q  205 ataacctgcaat 216  Q
    ||||||||||||    
T  134018 ataacctgcaat 134029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 107; Significance: 2e-53; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 56 - 214
Target Start/End: Original strand, 43310275 - 43310433
Alignment:
Q  56 tttgaccttgtaggcaaccgattctttaccaacctccaagcaaaaatagaaaccttaagtggaacatgtttatgtcaaaccagggcatctgcaccttcca 155  Q
    ||||||||||||||||||| |||||||||||||||||||| |||||| || ||||||||||||||||||||||| ||||| || ||||||||||||||||    
T  43310275 tttgaccttgtaggcaacctattctttaccaacctccaagtaaaaattgagaccttaagtggaacatgtttatgccaaactagagcatctgcaccttcca 43310374  T
Q  156 cctgaggaaactctgaagaagtcagcaaatgataagcgctactaactgtataacctgca 214  Q
    ||||||||   || ||||||||||| |||||||||||||||| ||||||||||||||||    
T  43310375 cctgaggagtgtccgaagaagtcagtaaatgataagcgctacgaactgtataacctgca 43310433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 56 - 214
Target Start/End: Original strand, 26146231 - 26146389
Alignment:
Q  56 tttgaccttgtaggcaaccgattctttaccaacctccaagcaaaaatagaaaccttaagtggaacatgtttatgtcaaaccagggcatctgcaccttcca 155  Q
    |||||||| ||||||||||||| |||||||||||||||||||||||| || |||||||||||| |||||||||| ||||| || ||||||||||| ||||    
T  26146231 tttgacctggtaggcaaccgatcctttaccaacctccaagcaaaaattgagaccttaagtggagcatgtttatgccaaactagagcatctgcaccatcca 26146330  T
Q  156 cctgaggaaactctgaagaagtcagcaaatgataagcgctactaactgtataacctgca 214  Q
    |||||||||  || ||||||||||  |||||||||||||||| ||||||||||||||||    
T  26146331 cctgaggaatgtccgaagaagtcaaaaaatgataagcgctacgaactgtataacctgca 26146389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 52 - 164
Target Start/End: Original strand, 10688575 - 10688687
Alignment:
Q  52 cagatttgaccttgtaggcaaccgattctttaccaacctccaagcaaaaatagaaaccttaagtggaacatgtttatgtcaaaccagggcatctgcacct 151  Q
    ||||||||| | ||||||||||| |||||||||||||| ||||||||| || || ||||||||| ||||||||||||| ||||| || ||||||||||||    
T  10688575 cagatttgatcgtgtaggcaacctattctttaccaaccgccaagcaaatattgagaccttaagtagaacatgtttatgccaaacaagagcatctgcacct 10688674  T
Q  152 tccacctgaggaa 164  Q
    || ||||||||||    
T  10688675 tctacctgaggaa 10688687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 67 - 160
Target Start/End: Complemental strand, 43724255 - 43724162
Alignment:
Q  67 aggcaaccgattctttaccaacctccaagcaaaaatagaaaccttaagtggaacatgtttatgtcaaaccagggcatctgcaccttccacctga 160  Q
    |||||| |||||||| | |||||||||||||||||| || |||||||| |||||||| || || |||||||  ||| |  ||||||||||||||    
T  43724255 aggcaaacgattcttcatcaacctccaagcaaaaattgagaccttaagcggaacatgattgtgccaaaccaaagcaccaacaccttccacctga 43724162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 85 - 137
Target Start/End: Complemental strand, 6727872 - 6727820
Alignment:
Q  85 caacctccaagcaaaaatagaaaccttaagtggaacatgtttatgtcaaacca 137  Q
    ||||||||||||||||||||| |||||||| ||||| ||||| || |||||||    
T  6727872 caacctccaagcaaaaatagacaccttaaggggaacctgtttgtgccaaacca 6727820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 85 - 137
Target Start/End: Original strand, 13415728 - 13415780
Alignment:
Q  85 caacctccaagcaaaaatagaaaccttaagtggaacatgtttatgtcaaacca 137  Q
    ||||||||||| ||||||||| |||||||| ||||||||||| || |||||||    
T  13415728 caacctccaagaaaaaatagacaccttaaggggaacatgtttgtgccaaacca 13415780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 88 - 137
Target Start/End: Complemental strand, 27951511 - 27951462
Alignment:
Q  88 cctccaagcaaaaatagaaaccttaagtggaacatgtttatgtcaaacca 137  Q
    |||||||||||||||| | |||||||| ||||||||||| || |||||||    
T  27951511 cctccaagcaaaaataaacaccttaaggggaacatgtttgtgccaaacca 27951462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 89 - 137
Target Start/End: Complemental strand, 2207913 - 2207865
Alignment:
Q  89 ctccaagcaaaaatagaaaccttaagtggaacatgtttatgtcaaacca 137  Q
    ||||||||||||||||| |||||||| ||||| ||||| || |||||||    
T  2207913 ctccaagcaaaaatagacaccttaagaggaacctgtttgtgccaaacca 2207865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 83; Significance: 5e-39; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 56 - 214
Target Start/End: Complemental strand, 6995104 - 6994946
Alignment:
Q  56 tttgaccttgtaggcaaccgattctttaccaacctccaagcaaaaatagaaaccttaagtggaacatgtttatgtcaaaccagggcatctgcaccttcca 155  Q
    ||||||||||||||||||| ||  |||||||||||| |||||||||| || ||||||||||||||||||||||| ||||| || ||||||||||||||||    
T  6995104 tttgaccttgtaggcaacctatcttttaccaacctctaagcaaaaattgagaccttaagtggaacatgtttatgccaaactagagcatctgcaccttcca 6995005  T
Q  156 cctgaggaaactctgaagaagtcagcaaatgataagcgctactaactgtataacctgca 214  Q
    | |||||||  ||   || |||||| | |||||||||||||| ||||||||||||||||    
T  6995004 cttgaggaatgtcctgagtagtcagtagatgataagcgctacgaactgtataacctgca 6994946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 85 - 162
Target Start/End: Original strand, 34434309 - 34434386
Alignment:
Q  85 caacctccaagcaaaaatagaaaccttaagtggaacatgtttatgtcaaaccagggcatctgcaccttccacctgagg 162  Q
    ||||||||||||||||||||| || ||||| |||||||| ||||| |||||||  ||||| ||||| |||||||||||    
T  34434309 caacctccaagcaaaaatagagactttaagcggaacatggttatgccaaaccaaagcatcagcaccatccacctgagg 34434386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 56 - 162
Target Start/End: Original strand, 10362149 - 10362255
Alignment:
Q  56 tttgaccttgtaggcaaccgattctttaccaacctccaagcaaaaatagaaaccttaagtggaacatgtttatgtcaaaccagggcatctgcaccttcca 155  Q
    |||| ||||||||||||||| |||  || ||  |||||||||||||| ||||| |||||  ||||||||||||| ||||| || || |||||||  ||||    
T  10362149 tttgtccttgtaggcaaccggttccgtaacagtctccaagcaaaaattgaaactttaagcagaacatgtttatgccaaactagagcctctgcacgatcca 10362248  T
Q  156 cctgagg 162  Q
    |||||||    
T  10362249 cctgagg 10362255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 85 - 137
Target Start/End: Original strand, 15602369 - 15602421
Alignment:
Q  85 caacctccaagcaaaaatagaaaccttaagtggaacatgtttatgtcaaacca 137  Q
    ||||| ||||||||||||||| |||||||  |||||||| ||||| |||||||    
T  15602369 caaccgccaagcaaaaatagacaccttaatcggaacatggttatgccaaacca 15602421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 71; Significance: 7e-32; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 52 - 214
Target Start/End: Complemental strand, 25019444 - 25019282
Alignment:
Q  52 cagatttgaccttgtaggcaaccgattctttaccaacctccaagcaaaaatagaaaccttaagtggaacatgtttatgtcaaaccagggcatctgcacct 151  Q
    ||||||||| | ||||||||||| ||| ||||||||||  |||||||| || || ||||||||||||||||||||||| ||||| || ||||||||||||    
T  25019444 cagatttgatcgtgtaggcaaccaattttttaccaaccgtcaagcaaatattgagaccttaagtggaacatgtttatgccaaacaagagcatctgcacct 25019345  T
Q  152 tccacctgaggaaactctgaagaagtcagcaaatgataagcgctactaactgtataacctgca 214  Q
    |||||||||||||  |    || |||||| |||||||||| ||| || |||||||||||||||    
T  25019344 tccacctgaggaatgttgtgagtagtcagtaaatgataagtgctgctgactgtataacctgca 25019282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 52 - 216
Target Start/End: Complemental strand, 41805885 - 41805721
Alignment:
Q  52 cagatttgaccttgtaggcaaccgattctttaccaacctccaagcaaaaatagaaaccttaagtggaacatgtttatgtcaaaccagggcatctgcacct 151  Q
    ||||||||| | ||||||||||  ||| |||||||||| ||||||||| || || ||||| |||||||||| |||||| ||||| || |||| |||||||    
T  41805885 cagatttgatcgtgtaggcaacttattttttaccaaccgccaagcaaatattgagaccttgagtggaacatatttatgccaaacaagagcatatgcacct 41805786  T
Q  152 tccacctgaggaaactctgaagaagtcagcaaatgataagcgctactaactgtataacctgcaat 216  Q
    |||||||||||||  || | || |||||| |||  ||||||| | || | |||||||||||||||    
T  41805785 tccacctgaggaatgtcgggagtagtcagtaaaaaataagcgttgctgaatgtataacctgcaat 41805721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 80 - 216
Target Start/End: Complemental strand, 30573442 - 30573306
Alignment:
Q  80 tttaccaacctccaagcaaaaatagaaaccttaagtggaacatgtttatgtcaaaccagggcatctgcaccttccacctgaggaaactctgaagaagtca 179  Q
    |||||||||| |||| |||| || || |||||||| |||||||||||||| ||||| || |||||||||||||||||||||||||  || | || |||||    
T  30573442 tttaccaaccgccaaacaaatattgagaccttaaggggaacatgtttatgccaaacaagagcatctgcaccttccacctgaggaatgtcgggagtagtca 30573343  T
Q  180 gcaaatgataagcgctactaactgtataacctgcaat 216  Q
    | ||| | |||| | | || |||||||||||||||||    
T  30573342 gtaaaaggtaagtgttgctgactgtataacctgcaat 30573306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 85 - 137
Target Start/End: Complemental strand, 6343735 - 6343683
Alignment:
Q  85 caacctccaagcaaaaatagaaaccttaagtggaacatgtttatgtcaaacca 137  Q
    ||||| ||||||||||||||| |||||||  |||||||| ||||| |||||||    
T  6343735 caaccgccaagcaaaaatagacaccttaatcggaacatgcttatgccaaacca 6343683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 89 - 137
Target Start/End: Original strand, 39694520 - 39694568
Alignment:
Q  89 ctccaagcaaaaatagaaaccttaagtggaacatgtttatgtcaaacca 137  Q
    ||||||||||||||||| |||||||| ||||| ||||| || |||||||    
T  39694520 ctccaagcaaaaatagacaccttaagaggaacctgtttgtgccaaacca 39694568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 69; Significance: 1e-30; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 36685805 - 36686012
Alignment:
Q  1 gcaccctaacaaacagcccacatccgcaggcaaaagaacaccgcgacccagcagatttgaccttgtaggcaaccgattctttaccaacctccaagcaaaa 100  Q
    ||||||||||||||| | | ||||||||   || ||||  ||||||  || ||| |||||||| ||||||||||||| |||||||||| |||||||||||    
T  36685805 gcaccctaacaaacaactcgcatccgcatctaagagaattccgcgatgcatcaggtttgacctggtaggcaaccgatcctttaccaacatccaagcaaaa 36685904  T
Q  101 atagaaaccttaagtggaacatgtttatgtcaaaccagggcatctgcaccttccacctgaggaaactctgaagaagtcagcaaatgataagcgctactaa 200  Q
    ||  | ||||||||||||||||||||||| ||||  || ||||||||||| | || ||||||||  || ||||||||||  ||||||||||| |||| ||    
T  36685905 attaagaccttaagtggaacatgtttatgccaaattagagcatctgcaccataca-ctgaggaatgtccgaagaagtcaaaaaatgataagcactacgaa 36686003  T
Q  201 ctgtataac 209  Q
    |||| ||||    
T  36686004 ctgtgtaac 36686012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 67 - 214
Target Start/End: Original strand, 45270268 - 45270415
Alignment:
Q  67 aggcaaccgattctttaccaacctccaagcaaaaatagaaaccttaagtggaacatgtttatgtcaaaccagggcatctgcaccttccacctgaggaaac 166  Q
    |||||| || ||||| | ||||||||||||||||||||| |||||||| |||||||| || || |||||||  ||||| ||||| |||||||||||        
T  45270268 aggcaaacggttcttcagcaacctccaagcaaaaatagagaccttaagcggaacatggttgtgccaaaccaaagcatcagcaccatccacctgagggcta 45270367  T
Q  167 tctgaagaagtcagcaaatgataagcgctactaactgtataacctgca 214  Q
    ||   |||||||| ||||||||| || || || |||||||||||||||    
T  45270368 tcctgagaagtcaacaaatgataggcactcctgactgtataacctgca 45270415  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 85 - 123
Target Start/End: Original strand, 41150059 - 41150097
Alignment:
Q  85 caacctccaagcaaaaatagaaaccttaagtggaacatg 123  Q
    ||||||||||||||||||||| |||||||| ||||||||    
T  41150059 caacctccaagcaaaaatagagaccttaagcggaacatg 41150097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 67; Significance: 2e-29; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 92 - 214
Target Start/End: Original strand, 27834 - 27956
Alignment:
Q  92 caagcaaaaatagaaaccttaagtggaacatgtttatgtcaaaccagggcatctgcaccttccacctgaggaaactctgaagaagtcagcaaatgataag 191  Q
    ||||||||||| || |||||||||||| |||||||||| ||||| || ||||||||||| |||||||||||||  || ||||||| ||  ||||||||||    
T  27834 caagcaaaaattgagaccttaagtggagcatgtttatgccaaactagagcatctgcaccatccacctgaggaatgtccgaagaagccaaaaaatgataag 27933  T
Q  192 cgctactaactgtataacctgca 214  Q
    |||||| ||||||||||||||||    
T  27934 cgctacgaactgtataacctgca 27956  T

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Target: scaffold0003 (Bit Score: 61; Significance: 6e-26; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 52 - 216
Target Start/End: Original strand, 367017 - 367181
Alignment:
Q  52 cagatttgaccttgtaggcaaccgattctttaccaacctccaagcaaaaatagaaaccttaagtggaacatgtttatgtcaaaccagggcatctgcacct 151  Q
    ||||||||| | ||||||||||  ||| |||||||| | ||||||||| || || ||||||||||| ||||||||||| ||||| || ||||||||||||    
T  367017 cagatttgatcgtgtaggcaacttattttttaccaatcgccaagcaaatattgagaccttaagtgggacatgtttatgccaaacaagagcatctgcacct 367116  T
Q  152 tccacctgaggaaactctgaagaagtcagcaaatgataagcgctactaactgtataacctgcaat 216  Q
    |||||||||||||  ||   || |||||| |||  ||||||| | || |||||||||||||||||    
T  367117 tccacctgaggaatgtcgagagtagtcagtaaaaaataagcgttgctgactgtataacctgcaat 367181  T

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Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 48117329 - 48117463
Alignment:
Q  1 gcaccctaacaaacagcccacatccgcaggcaaaagaacaccgcgacccagcagatttgaccttgtaggcaaccgattctttaccaacctccaagcaaaa 100  Q
    ||||||||||||||| ||| ||||||||   || |||| |||||||  || |||||| ||||| ||||||||||||| ||||  ||||||||||||||||    
T  48117329 gcaccctaacaaacaacccgcatccgcatctaagagaataccgcgatgcatcagattggacctggtaggcaaccgatcctttgtcaacctccaagcaaaa 48117428  T
Q  101 atagaaaccttaagtggaacatgtttatgtcaaac 135  Q
    || || ||||||| |||||||| |||||| |||||    
T  48117429 attgagaccttaaatggaacatatttatgccaaac 48117463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 80 - 164
Target Start/End: Complemental strand, 30821837 - 30821753
Alignment:
Q  80 tttaccaacctccaagcaaaaatagaaaccttaagtggaacatgtttatgtcaaaccagggcatctgcaccttccacctgaggaa 164  Q
    |||||||||| ||||||||| || || |||||||||||||| |||||||| ||||| || |||||||||||||||||||||||||    
T  30821837 tttaccaaccgccaagcaaatattgagaccttaagtggaacctgtttatgccaaacaagagcatctgcaccttccacctgaggaa 30821753  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 85 - 137
Target Start/End: Original strand, 40688112 - 40688164
Alignment:
Q  85 caacctccaagcaaaaatagaaaccttaagtggaacatgtttatgtcaaacca 137  Q
    ||||||||||||||||||||| |||||||| ||||| ||||| || |||||||    
T  40688112 caacctccaagcaaaaatagacaccttaaggggaacctgtttgtgccaaacca 40688164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 85 - 136
Target Start/End: Complemental strand, 22877560 - 22877509
Alignment:
Q  85 caacctccaagcaaaaatagaaaccttaagtggaacatgtttatgtcaaacc 136  Q
    ||||||||||||||||||||| |||||||| | ||||||||| || ||||||    
T  22877560 caacctccaagcaaaaatagacaccttaagggaaacatgtttgtgccaaacc 22877509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0750 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0750
Description:

Target: scaffold0750; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 85 - 137
Target Start/End: Original strand, 6096 - 6148
Alignment:
Q  85 caacctccaagcaaaaatagaaaccttaagtggaacatgtttatgtcaaacca 137  Q
    ||||||||||||||||||||| ||||| || ||||||||||| || |||||||    
T  6096 caacctccaagcaaaaatagacaccttgaggggaacatgtttgtgccaaacca 6148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0124 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0124
Description:

Target: scaffold0124; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 85 - 137
Target Start/End: Original strand, 22458 - 22510
Alignment:
Q  85 caacctccaagcaaaaatagaaaccttaagtggaacatgtttatgtcaaacca 137  Q
    ||||||||||||||||||||| ||||| || ||||||||||| || |||||||    
T  22458 caacctccaagcaaaaatagacaccttgaggggaacatgtttgtgccaaacca 22510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 88 - 137
Target Start/End: Complemental strand, 44901 - 44852
Alignment:
Q  88 cctccaagcaaaaatagaaaccttaagtggaacatgtttatgtcaaacca 137  Q
    |||||||||||||||| | |||||||| ||||||||||| || |||||||    
T  44901 cctccaagcaaaaataaacaccttaaggggaacatgtttgtgccaaacca 44852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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