View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8109_low_40 (Length: 235)
Name: NF8109_low_40
Description: NF8109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8109_low_40 |
 | |
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| [»] chr7 (2 HSPs) |
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| [»] chr3 (4 HSPs) |
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| [»] chr6 (2 HSPs) |
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| [»] scaffold0524 (1 HSPs) |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 33865578 - 33865807
Alignment:
| Q |
1 |
tcacttgctgttggtttaatatctttatatctaatcctaatgtacaatgcacacaagacctaaaaaccctaatccttgatttagagcgggaaaactttgc |
100 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
33865578 |
tcacttgctgttggtttaatatatttatatctaatcctaatgtacaatgcacacaagacctaaaaaccctaatctttgatttagagcgggaaaactttgc |
33865677 |
T |
|
| Q |
101 |
tttaactgcacttaatgtacaattcaaatttcaaatcccttcacacattggtattccatcaaacattcaatgcttgcttctttccgaggcatgcacatgg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| || | |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33865678 |
tttaactgcacttaatgtacaattcaaatttcaaatcccttcac---tt--ttatccatcaaacattcaatgcttgcttctttccgaggcatgcacatgg |
33865772 |
T |
|
| Q |
201 |
ctcaaaatttggcttcaatcttacccactcttctc |
235 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
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|
| T |
33865773 |
ctcaaaatttggcttcaatcttacccactcttctc |
33865807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 63 - 235
Target Start/End: Complemental strand, 5790584 - 5790399
Alignment:
| Q |
63 |
aaaaccctaatccttgatttagagcgggaaaactttgctttaactgcacttaatgtacaattcaaatttcaaatcccttcac-------------acatt |
149 |
Q |
| |
|
|||||||||||||| ||||| |||||||||| | ||| |||||| ||||||||||| |||| |||||||||||||||||| ||||| |
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|
| T |
5790584 |
aaaaccctaatcctagattttaagcgggaaaattctgccttaactacacttaatgtaaaatttcaatttcaaatcccttcactgttacccatcaaacatt |
5790485 |
T |
|
| Q |
150 |
ggtattccatcaaacattcaatgcttgcttctttccgaggcatgcacatggctcaaaatttggcttcaatcttacccactcttctc |
235 |
Q |
| |
|
||||||||||||||||||||||||| | ||||||||||| ||||||||||||||||| ||||||| ||| ||||||||||||||| |
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|
| T |
5790484 |
ggtattccatcaaacattcaatgctcggttctttccgagatatgcacatggctcaaaaattggcttaaatgttacccactcttctc |
5790399 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 177; Significance: 2e-95; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 20 - 235
Target Start/End: Complemental strand, 23217121 - 23216893
Alignment:
| Q |
20 |
tatctttatatctaatcctaatgtacaatgcacacaagacctaaaaaccctaatccttgatttagagcgggaaaactttgctttaactgcacttaatgta |
119 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
23217121 |
tatctttatatccaatcctaatgtacaatgcacagaagacctaaaaaccctaatccttgatttagagcgggaaaactttgctttaactgcacttaatgta |
23217022 |
T |
|
| Q |
120 |
caattcaaatttcaaatcccttcac-------------acattggtattccatcaaacattcaatgcttgcttctttccgaggcatgcacatggctcaaa |
206 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
23217021 |
caattcaaatttcaaatcccttcacttttatccatcaaacattggtattccatcaaacattcaatgcttgcttctttccgaggcatgcacatggctcaaa |
23216922 |
T |
|
| Q |
207 |
atttggcttcaatcttacccactcttctc |
235 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
23216921 |
atttggcttcaatcttacccactcttctc |
23216893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 28 - 232
Target Start/End: Complemental strand, 30766100 - 30765882
Alignment:
| Q |
28 |
tatctaatcctaatgtacaatgcacacaagaccta-aaaaccctaatccttgatttagagcgggaaaactttgctttaactgcacttaatgtacaattca |
126 |
Q |
| |
|
||||||||||||| |||||||||||||| | | |||||||||||| |||||||||||||||||| ||||| |||||| || || ||||| ||||| |
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|
| T |
30766100 |
tatctaatcctaaactacaatgcacacaaatcatctaaaaccctaatctatgatttagagcgggaaaattttgccttaactacatttgatgtaaaattcg |
30766001 |
T |
|
| Q |
127 |
aatttcaaatcccttcac-------------acattggtattccatcaaacattcaatgcttgcttctttccgaggcatgcacatggctcaaaatttggc |
213 |
Q |
| |
|
||||||||||| |||||| |||||||||||||||||||||||||||||| ||||| || |||||||||||||||||||||| ||| | |
|
|
| T |
30766000 |
aatttcaaatctcttcactgttacccatcaaacattggtattccatcaaacattcaatgctcgcttcattttgaggcatgcacatggctcaaaaattgac |
30765901 |
T |
|
| Q |
214 |
ttcaatcttacccactctt |
232 |
Q |
| |
|
|||||| |||||||||||| |
|
|
| T |
30765900 |
ttcaatgttacccactctt |
30765882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 29 - 139
Target Start/End: Complemental strand, 50831244 - 50831133
Alignment:
| Q |
29 |
atctaatcctaatgtacaatgcacacaagacctaaaaa-ccctaatccttgatttagagcgggaaaactttgctttaactgcacttaatgtacaattcaa |
127 |
Q |
| |
|
||||| |||||||||||||| ||||||| || |||||| |||||||||||||||| || | ||||| |||||||||||| || ||||||| ||||||| |
|
|
| T |
50831244 |
atctagtcctaatgtacaatacacacaacacttaaaaaaccctaatccttgattttgaaccggaaacttttgctttaactacatttaatgtcaaattcaa |
50831145 |
T |
|
| Q |
128 |
atttcaaatccc |
139 |
Q |
| |
|
|||||||||||| |
|
|
| T |
50831144 |
atttcaaatccc |
50831133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 29 - 139
Target Start/End: Original strand, 50844609 - 50844720
Alignment:
| Q |
29 |
atctaatcctaatgtacaatgcacacaagacctaaaa-accctaatccttgatttagagcgggaaaactttgctttaactgcacttaatgtacaattcaa |
127 |
Q |
| |
|
||||| |||||||||||||| ||||||| || ||||| ||||||||||||||||| || | ||||| |||||||||||| || ||||||| ||||||| |
|
|
| T |
50844609 |
atctagtcctaatgtacaatacacacaacacttaaaaaaccctaatccttgattttgaaccggaaacttttgctttaactacatttaatgtcaaattcaa |
50844708 |
T |
|
| Q |
128 |
atttcaaatccc |
139 |
Q |
| |
|
|||||||||||| |
|
|
| T |
50844709 |
atttcaaatccc |
50844720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 173; Significance: 4e-93; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 20 - 235
Target Start/End: Original strand, 11074862 - 11075090
Alignment:
| Q |
20 |
tatctttatatctaatcctaatgtacaatgcacacaagacctaaaaaccctaatccttgatttagagcgggaaaactttgctttaactgcacttaatgta |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
11074862 |
tatctttatatctaatcctaatgtacaatgcacacaagacctaaaaaccctaatccttgatttagagcgggaaaactttgctttaactacacttaatgta |
11074961 |
T |
|
| Q |
120 |
caattcaaatttcaaatcccttcac-------------acattggtattccatcaaacattcaatgcttgcttctttccgaggcatgcacatggctcaaa |
206 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11074962 |
caattcaaatttcaaatcccttcactgttatccatcaaacattggtattccatcaaacattcaatgcttgcttctttccgaggcatgcacatggctcaaa |
11075061 |
T |
|
| Q |
207 |
atttggcttcaatcttacccactcttctc |
235 |
Q |
| |
|
||||||| ||||||||||||| ||||||| |
|
|
| T |
11075062 |
atttggcatcaatcttacccattcttctc |
11075090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 144
Target Start/End: Original strand, 4434995 - 4435112
Alignment:
| Q |
28 |
tatctaatcctaatgtacaatgcacacaagaccta-aaaaccctaatccttgatttagagcgggaaaactttgctttaactgcacttaatgtacaattca |
126 |
Q |
| |
|
||||||||||||| ||||||||| |||| || | |||||||||||||| ||| ||||||||||| |||||| || |||||||||| |||| |
|
|
| T |
4434995 |
tatctaatcctaaactacaatgcaaacaaaacatctaaaaccctaatcctatgttttgagcgggaaaattttgctaatacctcacttaatgtcattttca |
4435094 |
T |
|
| Q |
127 |
aatttcaaatcccttcac |
144 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
4435095 |
aatttcaaatcccttcac |
4435112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0524 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: scaffold0524
Description:
Target: scaffold0524; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 28 - 235
Target Start/End: Original strand, 5140 - 5362
Alignment:
| Q |
28 |
tatctaatcctaatgtacaatgcacacaagacctaaaaa--ccctaatccttgatttagagcgggaaaactttgctttaactgcacttaatgtacaattc |
125 |
Q |
| |
|
|||||||||||||||||||||| | |||||| ||||||| |||||| ||| |||| |||| |||||| | ||| |||||| |||||| ||| ||||| |
|
|
| T |
5140 |
tatctaatcctaatgtacaatgtaaacaagatctaaaaaaaccctaaacctagattatgagcaggaaaattctgccttaactacacttattgttaaattc |
5239 |
T |
|
| Q |
126 |
aaatttcaaatcccttcac-------------acattggtattccatcaaacattcaatgcttgcttctttccgaggcatgcacatggctcaaaatttgg |
212 |
Q |
| |
|
|||||||||||||||||| |||||||||||| ||||||||||||||||| ||||||||| |||||||||||||||||||||| |||| |
|
|
| T |
5240 |
caatttcaaatcccttcactattatccatctaacattggtattcaatcaaacattcaatgctcgcttctttctgaggcatgcacatggctcaaaaattgg |
5339 |
T |
|
| Q |
213 |
cttcaatcttacccactcttctc |
235 |
Q |
| |
|
||||||| | || |||||||||| |
|
|
| T |
5340 |
cttcaatgtgactcactcttctc |
5362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 67; Significance: 7e-30; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 145 - 235
Target Start/End: Original strand, 7134949 - 7135039
Alignment:
| Q |
145 |
acattggtattccatcaaacattcaatgcttgcttctttccgaggcatgcacatggctcaaaatttggcttcaatcttacccactcttctc |
235 |
Q |
| |
|
||||||||||||||||||| |||||||||| ||||||||| ||||||||||||||| |||||| ||||||||||| ||||||||||||||| |
|
|
| T |
7134949 |
acattggtattccatcaaatattcaatgctcgcttctttctgaggcatgcacatgggtcaaaaattggcttcaatgttacccactcttctc |
7135039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 30 - 110
Target Start/End: Original strand, 34703777 - 34703858
Alignment:
| Q |
30 |
tctaatcctaatgtacaatgcacacaagacct-aaaaaccctaatccttgatttagagcgggaaaactttgctttaactgca |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |||||||||| |||| |
|
|
| T |
34703777 |
tctaatcctaatgtacaatgcacacaagacctaaaaaaccctaatccttgattttgagcgggaaaaatttgctttaaatgca |
34703858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 62; Significance: 6e-27; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 30 - 110
Target Start/End: Complemental strand, 28549424 - 28549343
Alignment:
| Q |
30 |
tctaatcctaatgtacaatgcacacaagacctaaaaa-ccctaatccttgatttagagcgggaaaactttgctttaactgca |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| |||||||||| |||| |
|
|
| T |
28549424 |
tctaatcctaatgtacaatgcacacaagacctaaaaaaccctaatccttgattttgagcgggaaaaatttgctttaaatgca |
28549343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 30 - 110
Target Start/End: Original strand, 41866994 - 41867075
Alignment:
| Q |
30 |
tctaatcctaatgtacaatgcacacaagacct-aaaaaccctaatccttgatttagagcgggaaaactttgctttaactgca |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |||||||||| |||| |
|
|
| T |
41866994 |
tctaatcctaatgtacaatgcacacaagacctaaaaaaccctaatccttgattttgagcgggaaaaatttgctttaaatgca |
41867075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 28 - 93
Target Start/End: Complemental strand, 30441364 - 30441298
Alignment:
| Q |
28 |
tatctaatcctaatgtacaatgcacacaagacct-aaaaaccctaatccttgatttagagcgggaaa |
93 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| |||||||||| ||| |||||||||||||||| |
|
|
| T |
30441364 |
tatctaatcctaatgtacaatgcacacaacacctctaaaaccctaaacctagatttagagcgggaaa |
30441298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 144
Target Start/End: Complemental strand, 37720083 - 37719966
Alignment:
| Q |
28 |
tatctaatcctaatgtacaatgcacacaagaccta-aaaaccctaatccttgatttagagcgggaaaactttgctttaactgcacttaatgtacaattca |
126 |
Q |
| |
|
||||||||||||| ||||||||| |||| || | |||||||||||||| |||| ||||||||| | |||||| || |||||||||| |||| |
|
|
| T |
37720083 |
tatctaatcctaaactacaatgcaaacaaaacatctaaaaccctaatcctatattttgagcgggaagattttgctaatacctcacttaatgtcattttca |
37719984 |
T |
|
| Q |
127 |
aatttcaaatcccttcac |
144 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
37719983 |
aatttcaaatcccttcac |
37719966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 63 - 117
Target Start/End: Complemental strand, 1605341 - 1605287
Alignment:
| Q |
63 |
aaaaccctaatccttgatttagagcgggaaaactttgctttaactgcacttaatg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||| | ||| ||||| ||||||||| |
|
|
| T |
1605341 |
aaaaccctaatccttgatttagagcgggaaaattatgcattaaccacacttaatg |
1605287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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