View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8109_low_41 (Length: 234)
Name: NF8109_low_41
Description: NF8109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8109_low_41 |
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Alignment Details
Target: chr7 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 14 - 217
Target Start/End: Original strand, 33866004 - 33866206
Alignment:
| Q |
14 |
agatggagtagattacgtttttattgtgtgcctcagcctttaaggaactgatttgcgattcttgctcaattcctatcccattgattaatttcgtcagctg |
113 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33866004 |
agatggagtagattacgtttttattgtgtacctcagcctttaaggaactgatttgcgattcttgctcaattcctatcccattgattaatttcgtcagctt |
33866103 |
T |
|
| Q |
114 |
ttgtcgttacatgctcaattcaccatgtgtttccggcaacagagttgttcttctcgacacatgctannnnnnnnaaggtaagactaagagatgaccacca |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
33866104 |
ttgtcgttacatgctcaattcaccatgtgtttccggcaacagagttgttcttctcgacacatgcta-tttttttaaggtaagactaagagatgaccacca |
33866202 |
T |
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| Q |
214 |
tttt |
217 |
Q |
| |
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|||| |
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|
| T |
33866203 |
tttt |
33866206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 14 - 217
Target Start/End: Complemental strand, 23216688 - 23216486
Alignment:
| Q |
14 |
agatggagtagattacgtttttattgtgtgcctcagcctttaaggaactgatttgcgattcttgctcaattcctatcccattgattaatttcgtcagctg |
113 |
Q |
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|||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
23216688 |
agatggagaagattacgtttttattgtgtgcctcggcctttaaggaactgatttgcggttcttgctcaattcctatcccattgattaatttcgtcagctt |
23216589 |
T |
|
| Q |
114 |
ttgtcgttacatgctcaattcaccatgtgtttccggcaacagagttgttcttctcgacacatgctannnnnnnnaaggtaagactaagagatgaccacca |
213 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| |||||||||||||||| |
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| T |
23216588 |
atgtcgttacatgttcaattcaccatgtgtttccggcaacagagttgttcttctcgacacacgcta-tttttttaaggtaagattaagagatgaccacca |
23216490 |
T |
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| Q |
214 |
tttt |
217 |
Q |
| |
|
|||| |
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|
| T |
23216489 |
tttt |
23216486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 139; Significance: 7e-73; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 14 - 217
Target Start/End: Original strand, 11075276 - 11075478
Alignment:
| Q |
14 |
agatggagtagattacgtttttattgtgtgcctcagcctttaaggaactgatttgcgattcttgctcaattcctatcccattgattaatttcgtcagctg |
113 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| ||||||||||||||||||||||||||| |
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| T |
11075276 |
agatggagaagattacgtttttattgtgtgcctcagcctttaaggttctgatttgcggttcttgctcaatttctatcccattgattaatttcgtcagctt |
11075375 |
T |
|
| Q |
114 |
ttgtcgttacatgctcaattcaccatgtgtttccggcaacagagttgttcttctcgacacatgctannnnnnnnaaggtaagactaagagatgaccacca |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || |||| |||||||||||||||||||||||||| |
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| T |
11075376 |
ttgtcgttacatgctcaattcaccatgtgtttccggcaacagaattgttcttctcgactcacgcta-tatttttaaggtaagactaagagatgaccacca |
11075474 |
T |
|
| Q |
214 |
tttt |
217 |
Q |
| |
|
|||| |
|
|
| T |
11075475 |
tttt |
11075478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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