View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8109_low_43 (Length: 228)

Name: NF8109_low_43

Description: NF8109

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF8109_low_43

[»] chr8 (2 HSPs)

Target: chr8 (Bit Score: 129; Significance: 6e-67; HSPs: 2)

Name: chr8

Description:

Target: chr8; HSP #1

Raw Score: 129; E-Value: 6e-67

Query Start/End: Original strand, 16 - 227

Target Start/End: Complemental strand, 26425790 - 26425580

Alignment:

Q	16	cttataaaaatttgtcca-ccctaaatcatatggctcatgtgattatattacattccttgtgacacaatccgtgacaatagccaagtagaaaatgaggan	114	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	26425790	cttataaaaatttgtccatccctaaatcatatggctcatgtgattatattacattccttgtgacacaatccgtgacaatagccaagtagaaaatgagga-	26425692	T

Q	115	nnnnnnnnnnnnnnnnnnnnacggttaaatgaggaatagtttttgttaattgtattattggtgtaatatatccacccattttgttgatgactaacttctg	214	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|
T	26425691	-tttttttttcttattttttacggttaaatgaggaatagtttttgttaattgtattattggtgtaatatatccactcattttgttgatgacttacttctg	26425593	T

Q	215	ttgggtattattt	227	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|
T	26425592	ttgggtattattt	26425580	T

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Target: chr8; HSP #2

Raw Score: 52; E-Value: 6e-21

Query Start/End: Original strand, 137 - 224

Target Start/End: Complemental strand, 26424365 - 26424279

Alignment:

Q	137	ggttaaatgaggaatagtttttgttaattgtattattggtgtaatatatccacccattttgttgatgactaacttctgttgggtatta	224	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\| \|\| \|\|\|\|\|\|\|\|\|\| \| \|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \| \|\|\|\|\|\|\|
T	26424365	ggttaaatgaggaataatttttgttgatcgtattattggcg-aagatatccacccattttgttgatgactaacttctgctaggtatta	26424279	T

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