View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8109_low_8 (Length: 466)
Name: NF8109_low_8
Description: NF8109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8109_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 147; Significance: 2e-77; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 209 - 453
Target Start/End: Complemental strand, 12821699 - 12821454
Alignment:
| Q |
209 |
ttatcccttattctaaatgcttataaggtcatgctataagttaatctagattttccctctaattatcttgccttaattgttgttattcactcaaccctct |
308 |
Q |
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| T |
12821699 |
ttatctcttattctaaatgcttattaggt-atgttataagttaacctagattttccctctaattatcttaccttaattgttgttattcatttaaccctct |
12821601 |
T |
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| Q |
309 |
aatttttccctccactaatatgtctcttttgaaattcaaatttttattgttatgttttcctcattttttgcttgaaaatagtaaa-gtgatgtgtatgtg |
407 |
Q |
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||||||| ||||||||||||||||| |||||||||| |||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |
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| T |
12821600 |
aattttttcctccactaatatgtctgttttgaaattgaaatttctattgttatgttttcctgattttttgcttgaaaatagtaaacgtgatgtgtatgtt |
12821501 |
T |
|
| Q |
408 |
gttattgttatttaatacgaccttt-ccatatcctatgcagaataat |
453 |
Q |
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| T |
12821500 |
gtcatttgtatttaatacaacatttcccatatcctatgcagactaat |
12821454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 209 - 453
Target Start/End: Complemental strand, 12827341 - 12827096
Alignment:
| Q |
209 |
ttatcccttattctaaatgcttataaggtcatgctataagttaatctagattttccctctaattatcttgccttaattgttgttattcactcaaccctct |
308 |
Q |
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| T |
12827341 |
ttatctcttattctaaatgcttattaggt-atgttataagttaacctagattttccctctaattatcttaccttaattgttgttattcatttaaccctct |
12827243 |
T |
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| Q |
309 |
aatttttccctccactaatatgtctcttttgaaattcaaatttttattgttatgttttcctcattttttgcttgaaaatagtaaa-gtgatgtgtatgtg |
407 |
Q |
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| T |
12827242 |
aattttttcctccactaatatgtctgttttgaaattgaaatttctattgttatgttttcctgattttttgcttgaaaatagtaaacgtgatgtgtatgtt |
12827143 |
T |
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| Q |
408 |
gttattgttatttaatacgaccttt-ccatatcctatgcagaataat |
453 |
Q |
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| T |
12827142 |
gtcatttgtatttaatacaacatttcccatatcctatgcagactaat |
12827096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 103; Significance: 4e-51; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 210 - 450
Target Start/End: Original strand, 38505952 - 38506193
Alignment:
| Q |
210 |
tatcccttattctaaatgcttataaggtcatgctataagttaatctagattttccctctaattatcttgccttaattgttgttattcactcaaccctcta |
309 |
Q |
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||||||||||||||||||||||| ||||||||||| | |||| ||| |||||||||||||| ||||||| ||||||||| ||| ||||| ||||||| | |
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| T |
38505952 |
tatcccttattctaaatgcttattaggtcatgctaccacttaacctaaattttccctctaataatcttgcattaattgttattagtcacttaaccctcca |
38506051 |
T |
|
| Q |
310 |
atttttccctccactaatatgtctcttttgaaattcaaatttttattgttatgttttcctcattttttgcttgaaaatagtaaa-gtgatgtgtatgtgg |
408 |
Q |
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| T |
38506052 |
atttttccctccattattatgcctgttttgaaattcaaatgactattgtt-tgtttccctgattttttgcttgaaaatagaaaatgtgatatgtacgtgg |
38506150 |
T |
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| Q |
409 |
ttattgttatttaatacgacc-tttccatatcctatgcagaat |
450 |
Q |
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| ||| ||||||||| |||| |||||| |||||||||||||| |
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| T |
38506151 |
tcatttgtatttaatatgaccttttccaaatcctatgcagaat |
38506193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 90; Significance: 3e-43; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 1 - 149
Target Start/End: Original strand, 30470775 - 30470919
Alignment:
| Q |
1 |
ccaacaaaggtgtaacttggttaccattagttcatgatccctttctgattccgtaattatactatatccaagtttgctgttaacttattacaaataattc |
100 |
Q |
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||||||||||||||||||||||| ||||| |||||| ||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| |
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| T |
30470775 |
ccaacaaaggtgtaacttggttatcatta-----tgatccatttctgattccgtaattatactatatccaagttcgttgttaacttattacaaataattt |
30470869 |
T |
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| Q |
101 |
atcgtttataag-atattaaccacaaattactaatagtgatttatcgtta |
149 |
Q |
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| T |
30470870 |
gtcgtttagaagaatattaaccacaaattactcatagtgatttatcgtta |
30470919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 211 - 359
Target Start/End: Original strand, 16965141 - 16965289
Alignment:
| Q |
211 |
atcccttattctaaatgcttataaggtcatgctataagttaatctagattttccctctaattatcttgccttaattgttgttattcactcaaccctctaa |
310 |
Q |
| |
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|||||||| ||||||||||||| |||| ||| ||||| | || ||| ||||| ||||||| ||| || |||||| || ||| ||||| | ||||| || |
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| T |
16965141 |
atcccttactctaaatgcttattaggtgatgttataactaaacctaatttttctctctaataatcatggattaattatttttagtcacttagccctccaa |
16965240 |
T |
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| Q |
311 |
tttttccctccactaatatgtctcttttgaaattcaaatttttattgtt |
359 |
Q |
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|||||||||||||| |||| || |||||||||||||| | ||||||| |
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| T |
16965241 |
tttttccctccactgttatgcctgatttgaaattcaaatgtgtattgtt |
16965289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 209 - 245
Target Start/End: Original strand, 41579248 - 41579284
Alignment:
| Q |
209 |
ttatcccttattctaaatgcttataaggtcatgctat |
245 |
Q |
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|||||||||| ||||||||||||| |||||||||||| |
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| T |
41579248 |
ttatcccttactctaaatgcttattaggtcatgctat |
41579284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 210 - 288
Target Start/End: Original strand, 34704050 - 34704128
Alignment:
| Q |
210 |
tatcccttattctaaatgcttataaggtcatgctataagttaatctagattttccctctaattatcttgccttaattgt |
288 |
Q |
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||||||||||||||||||||||| ||||| ||||| | | || ||| |||||||||||||||||| || |||||||| |
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| T |
34704050 |
tatcccttattctaaatgcttattaggtcttgctactactaaacctaatttttccctctaattatctagcattaattgt |
34704128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 215 - 271
Target Start/End: Complemental strand, 39266909 - 39266853
Alignment:
| Q |
215 |
cttattctaaatgcttataaggtcatgctataagttaatctagattttccctctaat |
271 |
Q |
| |
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|||||||||||||||||| ||||| |||||| | |||| ||| ||||||||||||| |
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| T |
39266909 |
cttattctaaatgcttattaggtcttgctatcatttaacctaatttttccctctaat |
39266853 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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