View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8110_high_3 (Length: 295)
Name: NF8110_high_3
Description: NF8110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8110_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 249; Significance: 1e-138; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 282
Target Start/End: Original strand, 18057103 - 18057384
Alignment:
| Q |
1 |
agaaacatcgttgctcgagtttatgagtccgtttaagaaaaacatgtaatttgtcatgtctgggttgcatctcttgtgacatttctcgaatgcaacgatg |
100 |
Q |
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| T |
18057103 |
agaaacatcgttggtcgagtttatgagtccgtttaagaaaaacatgtaatttgtcatgtctgggttgcatctcttgtgacatttctcgaatgcaacgatg |
18057202 |
T |
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| Q |
101 |
ttacgaaacacggttcctctatgatcaccaatgtacaatggaggaatagttagttgctttatcatgactccccannnnnnnccaaagcttatatccaaca |
200 |
Q |
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| T |
18057203 |
ttacgaaacacggttcctctatgatcaccaatgtacaatggaggaatagttagttgctttatcataactccccatttttttccaaagcttatatccaaca |
18057302 |
T |
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| Q |
201 |
attctctattctcacaagctttaattttcacacccccttcttttagttcggttattgaatgaatcatctcgctctgatgtcc |
282 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
18057303 |
attctctattctcacaagctttaattttcacacccccttcttttagttcggttattgaatgaatcatctcgctctgacgtcc |
18057384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 20 - 277
Target Start/End: Original strand, 15733735 - 15733992
Alignment:
| Q |
20 |
tttatgagtccgtttaagaaaaacatgtaatttgtcatgtctgggttgcatctcttgtgacatttctcgaatgcaacgatgttacgaaacacggttcctc |
119 |
Q |
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| T |
15733735 |
tttatgagtctgtttaagaaaaacatgtaagttgtcatgtctggattgcatctcttgtgacatttttcaaatgcaactatgttgcgaaaaacagtacctc |
15733834 |
T |
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| Q |
120 |
tatgatcaccaatgtacaatggaggaatagttagttgctttatcatgactccccannnnnnnccaaagcttatatccaacaattctctattctcacaagc |
219 |
Q |
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| T |
15733835 |
tgtgatcaccaatgtacaaaggtggaatagttagttcctttaccataattccccatttttttccaaagcttatatccatcaactctctactctcgcaggc |
15733934 |
T |
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| Q |
220 |
tttaattttcacacccccttcttttagttcggttattgaatgaatcatctcgctctga |
277 |
Q |
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| T |
15733935 |
tttaattttcacacccccttcttttagttctgttattgaatgaatcatctggctctga |
15733992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 17 - 277
Target Start/End: Original strand, 15727713 - 15727973
Alignment:
| Q |
17 |
gagtttatgagtccgtttaagaaaaacatgtaatttgtcatgtctgggttgcatctcttgtgacatttctcgaatgcaacgatgttacgaaacacggttc |
116 |
Q |
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||||||||||||| ||||||||||||||||||| ||||||||||| | |||||||||||||||||||| || |||||||| ||||| ||||| || || | |
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| T |
15727713 |
gagtttatgagtctgtttaagaaaaacatgtaagttgtcatgtctagattgcatctcttgtgacatttttcaaatgcaactatgttgcgaaaaacagtac |
15727812 |
T |
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| Q |
117 |
ctctatgatcaccaatgtacaatggaggaatagttagttgctttatcatgactccccannnnnnnccaaagcttatatccaacaattctctattctcaca |
216 |
Q |
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|||| ||||||||||||||||| || ||||||||||||| ||||| ||| | |||||| |||||||||||||||| |||||||||| ||||||| |
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| T |
15727813 |
ctctgtgatcaccaatgtacaaaggtggaatagttagttcctttaccataattccccatttttttccaaagcttatatccatcaattctctactctcaca |
15727912 |
T |
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| Q |
217 |
agctttaattttcacacccccttcttttagttcggttattgaatgaatcatctcgctctga |
277 |
Q |
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|||||| ||||||||||||||| ||||||||| ||||||||||||||||||| ||||||| |
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| T |
15727913 |
tgctttagttttcacaccccctttttttagttctgttattgaatgaatcatctggctctga |
15727973 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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