View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8110_low_1 (Length: 766)
Name: NF8110_low_1
Description: NF8110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8110_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 454; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 179 - 747
Target Start/End: Original strand, 14442600 - 14443164
Alignment:
| Q |
179 |
gtttaatgttgttaggttgacattctaaaacgactttacgcataaccaatcaaaacattgagaattacatcggtaaaaaattacaataaccataactaat |
278 |
Q |
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| T |
14442600 |
gtttaatgttgttaggttgacattccaaaacgactttacgcataaccaatcaaaacattcagaattacattggtaaaaaattacaataaccataactaat |
14442699 |
T |
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| Q |
279 |
tacacattcaaaagaatactttattagtccccttaaaaaattaaatgaaaaataacagattacgtacataaatgtgtatcagttacgtacttaatgtgtt |
378 |
Q |
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| T |
14442700 |
tacacattcaaaagaatactttattagtccacttaaaaaattaaatgaaaaataacagattacgtacataaatgtctatcagttacgtacttaatgtgtt |
14442799 |
T |
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| Q |
379 |
atactaatacattattcttttaaatgtgtannnnnnnnnnnnnnnnnnngtggtaattaattcgtttgtaaaagaatttggtagtgtcacataacaccgc |
478 |
Q |
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| T |
14442800 |
atactaatacattattcttttaaatgtgta---attattattattattagtggtaattaattcgtttgtaaaagaatttggtagtgtcacataacaccgc |
14442896 |
T |
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| Q |
479 |
cttgcgaaaatttcaaaactaaatacaaagatcgcaatcacaatttaaaacaatccttcnnnnnnnnctgagcttatctcagaaaagtttagtgagttat |
578 |
Q |
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| T |
14442897 |
cttgcgaaaatttcaaaactaaatacaaagatcgcaatcacaatttaaaacaatccttc-tttttttctgagcttatctcagaaaagtttagtgagttat |
14442995 |
T |
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| Q |
579 |
ataattgaaataattgaaagattaccgagtaataaggagcagcagcaacaacattgataggttgatcagagggatctgaaggagagagtgcatacaaaag |
678 |
Q |
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| T |
14442996 |
ataattgaaataattgaaagattaccgagtaataaggagcagcagcaacaacattgataggttgatcagagggatctgaaggagagagtgcatacaaaag |
14443095 |
T |
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| Q |
679 |
agcattgaaaagttgagtagagccatttcctaacactatgaacttatcttttgtgacaacattcccaac |
747 |
Q |
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| T |
14443096 |
agcattgaaaagttgagtagagccatttcctaacactatgaacttatcttttgtgacaacattaccaac |
14443164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 19 - 118
Target Start/End: Original strand, 14442440 - 14442539
Alignment:
| Q |
19 |
gaccaggattgtgttactaggattgatgttttgtataacagagcagatcagtgaccacaaacatacgacaacacatgttgactagtggacattattttca |
118 |
Q |
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| T |
14442440 |
gaccaggattgtgttactaggattgatgttttgtctaacagaccagatcagtgaccacaaacatacgacaacacatgttgactagtggacattattttca |
14442539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 594 - 748
Target Start/End: Original strand, 14433594 - 14433748
Alignment:
| Q |
594 |
gaaagattaccgagtaataaggagcagcagcaacaacattgataggttgatcagagggatctgaaggagagagtgcatacaaaagagcattgaaaagttg |
693 |
Q |
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||||||| |||||||||||||||| || || || |||||||||||| ||||||| | |||| ||||||| | || ||||| ||| | ||| ||||| |
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| T |
14433594 |
gaaagatcaccgagtaataaggagtaggagaaataacattgatagggtgatcagggacatctaaaggagacaaagcgaacaaagcagcttggaagagttg |
14433693 |
T |
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| Q |
694 |
agtagagccatttcctaacactatgaacttatcttttgtgacaacattcccaact |
748 |
Q |
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| T |
14433694 |
agaagagccatttccaacaactatgtatttatctttggtcacagcatttccaact |
14433748 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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