View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8110_low_11 (Length: 230)

Name: NF8110_low_11
Description: NF8110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8110_low_11
NF8110_low_11
[»] chr8 (8 HSPs)
chr8 (1-224)||(11984465-11984688)
chr8 (1-137)||(12014524-12014660)
chr8 (6-137)||(11975038-11975169)
chr8 (1-137)||(11991972-11992108)
chr8 (1-137)||(12009949-12010085)
chr8 (1-168)||(11980108-11980275)
chr8 (1-137)||(11999639-11999775)
chr8 (1-137)||(12004857-12004993)
[»] chr7 (1 HSPs)
chr7 (95-133)||(43494684-43494722)


Alignment Details
Target: chr8 (Bit Score: 212; Significance: 1e-116; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 11984465 - 11984688
Alignment:
Q  1 cagaagctttgagtgtttccaaagcatgaagacctcttttctcatctcttgcagtaagcaccactttgattccagctgaagctaactgcttaactatctc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||    
T  11984465 cagaagctttgagtgtttccaaagcatgaagacctcttttctcatctcttgctgtaagcacaactttgattccagctgaagctaactgcttaactatctc 11984564  T
Q  101 aaacccaattcctttgtttgctccagtcaccactgcaatcctgcaaacaaattcaacccaaatggtttgatactagttaatttgttacaagaaactatca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  11984565 aaacccaattcctttgtttgctccagtcaccactgcaatcctgcaaacaaattcaacccaaatggtttgatactagttaatttgttaaaagaaactatca 11984664  T
Q  201 atttagtccttaaaatgttaccct 224  Q
    ||||||||||||||||||||||||    
T  11984665 atttagtccttaaaatgttaccct 11984688  T

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Target: chr8; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 12014524 - 12014660
Alignment:
Q  1 cagaagctttgagtgtttccaaagcatgaagacctcttttctcatctcttgcagtaagcaccactttgattccagctgaagctaactgcttaactatctc 100  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12014524 cagaggctttgagtgtttccaaagcatgaagacctcttttctcatctcttgcagtaagcaccactttgattccagctgaagctaactgcttaactatctc 12014623  T
Q  101 aaacccaattcctttgtttgctccagtcaccactgca 137  Q
    ||| ||||| |||||||||||||||||||||||||||    
T  12014624 aaatccaatccctttgtttgctccagtcaccactgca 12014660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 6 - 137
Target Start/End: Original strand, 11975038 - 11975169
Alignment:
Q  6 gctttgagtgtttccaaagcatgaagacctcttttctcatctcttgcagtaagcaccactttgattccagctgaagctaactgcttaactatctcaaacc 105  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |||||||    
T  11975038 gctttgagtgtttgcaaagcatgaagacctcttttctcatctcttgctgtaagcaccactttgattccagctgaagctaattgcttaactatttcaaacc 11975137  T
Q  106 caattcctttgtttgctccagtcaccactgca 137  Q
    ||||||||||||||||||||||||||||||||    
T  11975138 caattcctttgtttgctccagtcaccactgca 11975169  T

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Target: chr8; HSP #4
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 11991972 - 11992108
Alignment:
Q  1 cagaagctttgagtgtttccaaagcatgaagacctcttttctcatctcttgcagtaagcaccactttgattccagctgaagctaactgcttaactatctc 100  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||| ||||||||||||||||||| ||||||||    
T  11991972 cagaagctttaagtgtttccaaagcatgaagacctcttttctcatctcttgatgtaagcaccactttgattacagctgaagctaactgctttactatctc 11992071  T
Q  101 aaacccaattcctttgtttgctccagtcaccactgca 137  Q
     |||||||||||||||||||| || ||||||||||||    
T  11992072 taacccaattcctttgtttgcacctgtcaccactgca 11992108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 12009949 - 12010085
Alignment:
Q  1 cagaagctttgagtgtttccaaagcatgaagacctcttttctcatctcttgcagtaagcaccactttgattccagctgaagctaactgcttaactatctc 100  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||  || |||||||||||||||| ||||||||||||||| |||||||||||    
T  12009949 cagatgctttgagtgtttccaaagcatgaagacctcttttctcatctcttgatgtgagcaccactttgattctagctgaagctaactgtttaactatctc 12010048  T
Q  101 aaacccaattcctttgtttgctccagtcaccactgca 137  Q
     ||||||||||||||||||||||| ||||||||||||    
T  12010049 taacccaattcctttgtttgctcctgtcaccactgca 12010085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 1 - 168
Target Start/End: Original strand, 11980108 - 11980275
Alignment:
Q  1 cagaagctttgagtgtttccaaagcatgaagacctcttttctcatctcttgcagtaagcaccactttgattccagctgaagctaactgcttaactatctc 100  Q
    |||| ||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| | ||||||||    
T  11980108 cagatgctttaagtgtttccaatgcatgaagacctcttttctcatctcttgctgtaagcaccactttgattccagctgaagctaattgccttactatctc 11980207  T
Q  101 aaacccaattcctttgtttgctccagtcaccactgcaatcctgcaaacaaattcaacccaaatggttt 168  Q
     || |||||||||||||||| ||| ||||||||||||||||||  ||||||  ||||||| |||||||    
T  11980208 taatccaattcctttgtttgatcctgtcaccactgcaatcctggcaacaaacacaacccacatggttt 11980275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 11999639 - 11999775
Alignment:
Q  1 cagaagctttgagtgtttccaaagcatgaagacctcttttctcatctcttgcagtaagcaccactttgattccagctgaagctaactgcttaactatctc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||| |||||||||||||| | ||||||||    
T  11999639 cagaagctttgagtgtttccaaagcatgaagacctcttttctcatctcttgctgtcagcacaactttgattccatctgaagctaactgccttactatctc 11999738  T
Q  101 aaacccaattcctttgtttgctccagtcaccactgca 137  Q
    ||| |||||||||||||||| ||| ||||||||||||    
T  11999739 aaatccaattcctttgtttgatcctgtcaccactgca 11999775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 12004857 - 12004993
Alignment:
Q  1 cagaagctttgagtgtttccaaagcatgaagacctcttttctcatctcttgcagtaagcaccactttgattccagctgaagctaactgcttaactatctc 100  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| | ||||||||    
T  12004857 cagatgctttgagtgtttccaaagcatgaagacctcttttctcatctcttgctgtaagcaccactttgattccagctgaagctaattgccttactatctc 12004956  T
Q  101 aaacccaattcctttgtttgctccagtcaccactgca 137  Q
     || |||||||||||||| | ||||||||||||||||    
T  12004957 taatccaattcctttgttcgatccagtcaccactgca 12004993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 133
Target Start/End: Original strand, 43494684 - 43494722
Alignment:
Q  95 tatctcaaacccaattcctttgtttgctccagtcaccac 133  Q
    ||||||||| |||||||||||||||||||| ||||||||    
T  43494684 tatctcaaatccaattcctttgtttgctcctgtcaccac 43494722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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