View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8110_low_2 (Length: 430)
Name: NF8110_low_2
Description: NF8110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8110_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 12 - 414
Target Start/End: Complemental strand, 18056859 - 18056456
Alignment:
| Q |
12 |
tactttattttcatacaagcaatttgtgagattaagaacacattcagtacaatgaaggaagccaagttcagttcagtgttcaaaggtttgttcattcttc |
111 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18056859 |
tactttacattcatacaagcaatttgtgagattaagaacacattcagtacaatgaaggaagccaagttcagttcagtgttcaaaggtttgttcattcttc |
18056760 |
T |
|
| Q |
112 |
catttgatgaccctcctcactctccagaaatccatcatgtaggtaaggatcatgatgtctctactaggagtgcttcttaaaattccatctttttcactct |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | |
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| T |
18056759 |
catttgatgaccctcctcactctccagaaatccatcatgtaggtaaggatcatgatgtctccactaggagtgcttcttaaaattccatctttttcactat |
18056660 |
T |
|
| Q |
212 |
cttttcaataagtcggtcctagtttactcttccattttcttcattgagaggaaggttt-ggataaatttttgacacaaaatcatccatttccatctttat |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | |||||||||||||| |
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| T |
18056659 |
cttttcaataagtcggtcctagtttactcttccattttcttcattgagaggaaggtttaggataaatttttgacacaaaatcacctatttccatctttat |
18056560 |
T |
|
| Q |
311 |
ctccctattttagtctaaattagtaagttttacatagatctagnnnnnnncccttgtgatttcgttgtcaaagggcgatgttgccttttgcagcgttgta |
410 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| ||||||||||||||| |
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| T |
18056559 |
ctccatattttagtctaaattagtaagttttacatagatctagtttttttcccttgtgatttcgttgtcaaagggtgatgttgtgttttgcagcgttgta |
18056460 |
T |
|
| Q |
411 |
tgat |
414 |
Q |
| |
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|||| |
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| T |
18056459 |
tgat |
18056456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 247 - 353
Target Start/End: Complemental strand, 25631745 - 25631639
Alignment:
| Q |
247 |
tttcttcattgagaggaaggtttggataaatttttgacacaaaatcatccatttccatctttatctccctattttagtctaaattagtaagttttacata |
346 |
Q |
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||||||||||||| || | ||||| | |||||||||| |||||||||| | ||||||||| |||| |||||| | ||||||| ||| | ||| ||||| |
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| T |
25631745 |
tttcttcattgaggggtggttttgggtcaatttttgacctaaaatcatccctctccatctttttctctctatttcaatctaaataagtgattttcacata |
25631646 |
T |
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| Q |
347 |
gatctag |
353 |
Q |
| |
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||||||| |
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| T |
25631645 |
gatctag |
25631639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 247 - 353
Target Start/End: Original strand, 4172423 - 4172529
Alignment:
| Q |
247 |
tttcttcattgagaggaaggtttggataaatttttgacacaaaatcatccatttccatctttatctccctattttagtctaaattagtaagttttacata |
346 |
Q |
| |
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||||||||||||| || | ||||| | |||| || ||| |||||||||||| | ||||||| |||| |||||| | ||||||| ||| | ||| ||||| |
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| T |
4172423 |
tttcttcattgaggggtggttttgggtcaattcttaacataaaatcatccatcttcatctttttctctctatttcaatctaaataagtgattttcacata |
4172522 |
T |
|
| Q |
347 |
gatctag |
353 |
Q |
| |
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||||||| |
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| T |
4172523 |
gatctag |
4172529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 239 - 353
Target Start/End: Original strand, 35580315 - 35580430
Alignment:
| Q |
239 |
tcttccattttcttcattgagaggaaggttt-ggataaatttttgacacaaaatcatccatttccatctttatctccctattttagtctaaattagtaag |
337 |
Q |
| |
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||||||| |||||||||||||||| ||||| || | ||||||||||| ||||||| ||| | ||||||| |||| |||||| | | ||||| ||| | |
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| T |
35580315 |
tcttccaatttcttcattgagagggtggttttgggtcaatttttgacataaaatcactcatcttcatctttttctctctatttcaatttaaataagtgat |
35580414 |
T |
|
| Q |
338 |
ttttacatagatctag |
353 |
Q |
| |
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||| |||||||||||| |
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| T |
35580415 |
tttcacatagatctag |
35580430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 233 - 353
Target Start/End: Original strand, 33109679 - 33109799
Alignment:
| Q |
233 |
gtttactcttccattttcttcattgagaggaaggtttggataaatttttgacacaaaatcatccatttccatctttatctccctattttagtctaaatta |
332 |
Q |
| |
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|||| |||||||| |||||||||||| || | ||||| | |||||||||| |||||| ||||| | ||||||| |||| ||||| | ||||||| | |
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| T |
33109679 |
gttttctcttccagtttcttcattgacgggtggttttgggtcaatttttgacctaaaatcgtccatcttcatctttttctctttatttcaatctaaataa |
33109778 |
T |
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| Q |
333 |
gtaagttttacatagatctag |
353 |
Q |
| |
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|| | ||| |||||||||||| |
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| T |
33109779 |
gtgattttcacatagatctag |
33109799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 233 - 353
Target Start/End: Complemental strand, 18569542 - 18569422
Alignment:
| Q |
233 |
gtttactcttccattttcttcattgagaggaaggtttggataaatttttgacacaaaatcatccatttccatctttatctccctattttagtctaaatta |
332 |
Q |
| |
|
|||| |||||||| ||||||||||||| || | ||||| | ||||||||||| |||||| | | | ||||||| |||| |||||| | ||||||| | |
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| T |
18569542 |
gttttctcttccagtttcttcattgaggggtggttttgggtcaatttttgacaagaaatcacctgtcttcatctttttctctctatttcaatctaaataa |
18569443 |
T |
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| Q |
333 |
gtaagttttacatagatctag |
353 |
Q |
| |
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|| | ||| |||||||||||| |
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| T |
18569442 |
gtgattttcacatagatctag |
18569422 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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