View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8110_low_3 (Length: 416)
Name: NF8110_low_3
Description: NF8110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8110_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 16 - 404
Target Start/End: Complemental strand, 45280743 - 45280355
Alignment:
| Q |
16 |
attttttcatcatgatgaataagtgttctgttctgccattttagactcaaaatccaaatcaacgtgagaaattatatccttccatgtacagtgtcacttt |
115 |
Q |
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| T |
45280743 |
attttttcatcatgatgaataagtgttctgttctgccattttagactcaaaatccaaatcaacgtgagaaattatatccttccatgtacagtgtcacttt |
45280644 |
T |
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| Q |
116 |
ctagtttccatttattgtttaatttttgttggagtttatatttgaaagacttcaccatgcagcgtacgtcctgatttgttatgcagcgtacgttctgaga |
215 |
Q |
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| T |
45280643 |
ctagtttccatttattgtttaatttttgttggagtttatatttgaaagtcttcaccatgcagcgtacgtcctgatttgttatgcagcgtacgttctgaga |
45280544 |
T |
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| Q |
216 |
tatctcctttaccatccaagatagtgacactctaagcctctaaagtgtttttaacaccatttttatattcatttctttctgcaaaaaatattgagaagga |
315 |
Q |
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| T |
45280543 |
tatctcctttaccatccaagatagtgacactctaagcctctaaagtgtttttaacaccatttttatattcatttctttctgcaaaaaatattgagaagga |
45280444 |
T |
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| Q |
316 |
aaatggataaagctatgactaaacttggaagcttttggatctccaagaaagccaaggaagagatttcccacataaccaacgacttatct |
404 |
Q |
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| T |
45280443 |
aaatggataaagctatgactaaacttggaagcttttggatctccaagaaagccaaggaagagatttcccacataaccaacgacttatct |
45280355 |
T |
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