View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8110_low_4 (Length: 298)
Name: NF8110_low_4
Description: NF8110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8110_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 19 - 263
Target Start/End: Complemental strand, 2370434 - 2370199
Alignment:
| Q |
19 |
atgaatatcttaaaaaatcacacccaagaatgatgaaacatcacataataaagttgaaataagaaagacttagaaatcacaaaggagcaatcactccatt |
118 |
Q |
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| T |
2370434 |
atgaatatcttaaaaaatcacacccaagaatgatgaaacatcacataataa-gttgaaataagaaagacttagaaatcacaaaggagccatcactccatt |
2370336 |
T |
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| Q |
119 |
caatcacc-gaagcaaccactccattcgatcccgctacacacatctacacaacctccacagtcacagtcacaaacatcgcaaccatcgcaatcacaatct |
217 |
Q |
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|||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
2370335 |
caatcacctgaagcaaccactccattcaatcccgctacacacatctacacaacctccacagtcacagtca---------caaccatcgcaatcacaatct |
2370245 |
T |
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| Q |
218 |
ccccaatcatctgaaaagattaatactccatcattcctattcttcc |
263 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
2370244 |
ccccaatcatctgaaaagattaatactccattattcctattcttcc |
2370199 |
T |
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