View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8110_low_6 (Length: 268)

Name: NF8110_low_6
Description: NF8110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8110_low_6
NF8110_low_6
[»] chr6 (12 HSPs)
chr6 (1-194)||(33414562-33414755)
chr6 (1-194)||(33269535-33269732)
chr6 (1-165)||(31564953-31565117)
chr6 (1-168)||(33258215-33258383)
chr6 (1-166)||(33395074-33395241)
chr6 (76-168)||(33384049-33384141)
chr6 (46-138)||(33278972-33279064)
chr6 (11-149)||(33406911-33407049)
chr6 (1-70)||(33293092-33293161)
chr6 (11-135)||(33280358-33280482)
chr6 (11-114)||(33395858-33395961)
chr6 (131-169)||(33293040-33293078)
[»] chr2 (2 HSPs)
chr2 (1-190)||(17447794-17447983)
chr2 (32-117)||(17445521-17445606)
[»] scaffold0428 (3 HSPs)
scaffold0428 (1-168)||(2336-2504)
scaffold0428 (46-138)||(15189-15281)
scaffold0428 (11-135)||(13771-13895)
[»] chr1 (1 HSPs)
chr1 (195-232)||(26512662-26512699)


Alignment Details
Target: chr6 (Bit Score: 138; Significance: 3e-72; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 33414755 - 33414562
Alignment:
Q  1 tctctcatccgctgataagaaatctgcaagactagcagctgaagaaagaatcggtacatacattcacgatgaacgcatcggtgttctaattgaagtgaac 100  Q
    |||||||||||||||||||||||| | ||||||||||||||||| |||||||||||||||||||||||||| ||| || |||||||||||||||||||||    
T  33414755 tctctcatccgctgataagaaatccggaagactagcagctgaaggaagaatcggtacatacattcacgatgcacgtattggtgttctaattgaagtgaac 33414656  T
Q  101 tgtgaaaccgactttgtcggaagaagtgagaaattcaaggagttggttgatgatctagcaatgcaagtttttgcttgtccacatgttcaatttg 194  Q
    |||||||| |||||||| || ||||||||||||||||||||||||||||||||||| ||||||||||||  |||||||||||| ||||| ||||    
T  33414655 tgtgaaacggactttgttggcagaagtgagaaattcaaggagttggttgatgatcttgcaatgcaagttgctgcttgtccacaggttcagtttg 33414562  T

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Target: chr6; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 33269732 - 33269535
Alignment:
Q  1 tctctcatccgctgataagaaatctgcaagactagcagctgaagaaagaatcggtacata----cattcacgatgaacgcatcggtgttctaattgaagt 96  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    ||||||| ||| | ||||||||||||||||||||||    
T  33269732 tctctcatccgctgataagaagtctgcaagactagcagctgaagaaagaatcggtacatatatacattcacaatgcatgcatcggtgttctaattgaagt 33269633  T
Q  97 gaactgtgaaaccgactttgtcggaagaagtgagaaattcaaggagttggttgatgatctagcaatgcaagtttttgcttgtccacatgttcaatttg 194  Q
    ||||||||||||||||||||| || |||||||||||||||||| |||||||||||||||| ||||||||||||  |||||||||||| ||||| ||||    
T  33269632 gaactgtgaaaccgactttgttggcagaagtgagaaattcaagaagttggttgatgatcttgcaatgcaagttgctgcttgtccacaggttcagtttg 33269535  T

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Target: chr6; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 1 - 165
Target Start/End: Original strand, 31564953 - 31565117
Alignment:
Q  1 tctctcatccgctgataagaaatctgcaagactagcagctgaagaaagaatcggtacatacattcacgatgaacgcatcggtgttctaattgaagtgaac 100  Q
    ||||||||||||||| |||||||| | ||||| ||  ||||||| |||||||||||||||||||||||||  ||||||  |||||||||||||||||||     
T  31564953 tctctcatccgctgacaagaaatccggaagacgagttgctgaaggaagaatcggtacatacattcacgattcacgcattagtgttctaattgaagtgaaa 31565052  T
Q  101 tgtgaaaccgactttgtcggaagaagtgagaaattcaaggagttggttgatgatctagcaatgca 165  Q
    |||||||| |||||| |||| ||||||||||||||||||||||||||| ||||||| ||||||||    
T  31565053 tgtgaaacggactttatcggtagaagtgagaaattcaaggagttggttcatgatcttgcaatgca 31565117  T

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Target: chr6; HSP #4
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 1 - 168
Target Start/End: Complemental strand, 33258383 - 33258215
Alignment:
Q  1 tctctcatccgctgataagaaatctgcaagactagcagctgaagaaagaatcggtacata-cattcacgatgaacgcatcggtgttctaattgaagtgaa 99  Q
    |||||||||||||||||||||||| |  ||||||||||  |||| ||||||||||||||| || || ||||  || ||| ||||||||||||||||||||    
T  33258383 tctctcatccgctgataagaaatccgggagactagcagaagaaggaagaatcggtacatatcactcgcgattcacacattggtgttctaattgaagtgaa 33258284  T
Q  100 ctgtgaaaccgactttgtcggaagaagtgagaaattcaaggagttggttgatgatctagcaatgcaagt 168  Q
    | |||||||||||||||| || |||||||||||||| |||||||||||||| ||||| |||||||||||    
T  33258283 cggtgaaaccgactttgttggcagaagtgagaaatttaaggagttggttgacgatcttgcaatgcaagt 33258215  T

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Target: chr6; HSP #5
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 1 - 166
Target Start/End: Complemental strand, 33395241 - 33395074
Alignment:
Q  1 tctctcatccgctgataagaaatctgcaagactagcagctgaagaaagaatcggtacatacattcacgatgaacgcatcggtgttctaattgaagtgaac 100  Q
    ||||||||| ||||| |||||||| |  || ||||||||||||| ||||||||||| ||||||| |||||| |||||||  |||||| ||||||||||||    
T  33395241 tctctcatcagctgacaagaaatccggtaggctagcagctgaaggaagaatcggtaaatacattgacgatgcacgcatctatgttctgattgaagtgaac 33395142  T
Q  101 tgtgaaaccgactttgtcgg--aagaagtgagaaattcaaggagttggttgatgatctagcaatgcaa 166  Q
    ||||||||||||||||| ||   |||||||| | ||||||||||||||||| ||||||  ||||||||    
T  33395141 tgtgaaaccgactttgttggcacagaagtgatagattcaaggagttggttgctgatctttcaatgcaa 33395074  T

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Target: chr6; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 76 - 168
Target Start/End: Complemental strand, 33384141 - 33384049
Alignment:
Q  76 catcggtgttctaattgaagtgaactgtgaaaccgactttgtcggaagaagtgagaaattcaaggagttggttgatgatctagcaatgcaagt 168  Q
    |||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| | |||||||||||||||||||| |||||||||||    
T  33384141 catcggtgttctaattgaagtgaactgtcaaaccgactttgtcggcagaagtgagaaaattaaggagttggttgatgatcttgcaatgcaagt 33384049  T

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Target: chr6; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 46 - 138
Target Start/End: Complemental strand, 33279064 - 33278972
Alignment:
Q  46 aagaatcggtacatacattcacgatgaacgcatcggtgttctaattgaagtgaactgtgaaaccgactttgtcggaagaagtgagaaattcaa 138  Q
    |||||| ||||||||||||||||||  || |||| |||||||||||||||| |||||||||||||||||||  || |||||| ||||||||||    
T  33279064 aagaattggtacatacattcacgattcacacatcagtgttctaattgaagttaactgtgaaaccgactttgatggcagaagttagaaattcaa 33278972  T

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Target: chr6; HSP #8
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 11 - 149
Target Start/End: Complemental strand, 33407049 - 33406911
Alignment:
Q  11 gctgataagaaatctgcaagactagcagctgaagaaagaatcggtacatacattcacgatgaacgcatcggtgttctaattgaagtgaactgtgaaaccg 110  Q
    ||||||||||||||   |||||||||||| || | || || ||||||||| ||| || ||  | ||||  ||||| |||||| |||||||| ||||||||    
T  33407049 gctgataagaaatccagaagactagcagccgatggaaaaaccggtacatatattgacaatttatgcattagtgttataattgtagtgaactatgaaaccg 33406950  T
Q  111 actttgtcggaagaagtgagaaattcaaggagttggttg 149  Q
    ||||||| || ||||||||| ||||| ||||||||||||    
T  33406949 actttgttggcagaagtgagcaattcgaggagttggttg 33406911  T

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Target: chr6; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 33293161 - 33293092
Alignment:
Q  1 tctctcatccgctgataagaaatctgcaagactagcagctgaagaaagaatcggtacatacattcacgat 70  Q
    |||||||| |||||||||||||||   ||||||||||||||||| |||||| ||||||||||||||||||    
T  33293161 tctctcattcgctgataagaaatccagaagactagcagctgaaggaagaattggtacatacattcacgat 33293092  T

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Target: chr6; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 11 - 135
Target Start/End: Complemental strand, 33280482 - 33280358
Alignment:
Q  11 gctgataagaaatctgcaagactagcagctgaagaaagaatcggtacatacattcacgatgaacgcatcggtgttctaattgaagtgaactgtgaaaccg 110  Q
    ||||| |||||||| | |||| ||  |||||||| | ||||| |||| ||||||||||||  |||||| ||| ||||| ||||||| |||||||| || |    
T  33280482 gctgacaagaaatccggaagattaaaagctgaaggaggaatcagtacctacattcacgattcacgcattggttttctatttgaagttaactgtgatactg 33280383  T
Q  111 actttgtcggaagaagtgagaaatt 135  Q
    ||||| | || ||||||||||||||    
T  33280382 acttttttggcagaagtgagaaatt 33280358  T

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Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 11 - 114
Target Start/End: Complemental strand, 33395961 - 33395858
Alignment:
Q  11 gctgataagaaatctgcaagactagcagctgaagaaagaatcggtacatacattcacgatgaacgcatcggtgttctaattgaagtgaactgtgaaaccg 110  Q
    ||||||||||||||   ||||||| |||| |||| || || ||||||||| |||||| ||  | ||||  |||||||| ||||| |||||| ||||||||    
T  33395961 gctgataagaaatcgagaagactaacagccgaaggaaaaaccggtacataaattcacaattcatgcattagtgttctagttgaattgaactatgaaaccg 33395862  T
Q  111 actt 114  Q
    ||||    
T  33395861 actt 33395858  T

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Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 169
Target Start/End: Complemental strand, 33293078 - 33293040
Alignment:
Q  131 aaattcaaggagttggttgatgatctagcaatgcaagtt 169  Q
    |||||||||||||||||| ||||||| ||||||||||||    
T  33293078 aaattcaaggagttggttaatgatcttgcaatgcaagtt 33293040  T

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Target: chr2 (Bit Score: 118; Significance: 3e-60; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 1 - 190
Target Start/End: Original strand, 17447794 - 17447983
Alignment:
Q  1 tctctcatccgctgataagaaatctgcaagactagcagctgaagaaagaatcggtacatacattcacgatgaacgcatcggtgttctaattgaagtgaac 100  Q
    |||||||||||||||||||||||| | |||||| |||||||||| |||||||||||||||||||||||||| ||||||||||| |||||||||| |||||    
T  17447794 tctctcatccgctgataagaaatccggaagactggcagctgaaggaagaatcggtacatacattcacgatgcacgcatcggtggtctaattgaattgaac 17447893  T
Q  101 tgtgaaaccgactttgtcggaagaagtgagaaattcaaggagttggttgatgatctagcaatgcaagtttttgcttgtccacatgttcaa 190  Q
    | ||||||||||||||| || ||||| |||| |||||||||||||||||||||||| |||||||||||   ||||| |||||| ||||||    
T  17447894 tttgaaaccgactttgttggcagaagggagagattcaaggagttggttgatgatcttgcaatgcaagtggctgcttttccacaggttcaa 17447983  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 32 - 117
Target Start/End: Original strand, 17445521 - 17445606
Alignment:
Q  32 ctagcagctgaagaaagaatcggtacatacattcacgatgaacgcatcggtgttctaattgaagtgaactgtgaaaccgactttgt 117  Q
    |||||| |||||  || ||||||||||| |||||| ||   | ||| ||||||||||||||||| ||||||||||||| |||||||    
T  17445521 ctagcaactgaaagaaaaatcggtacattcattcatgactcatgcaacggtgttctaattgaagggaactgtgaaaccaactttgt 17445606  T

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Target: scaffold0428 (Bit Score: 89; Significance: 6e-43; HSPs: 3)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 1 - 168
Target Start/End: Complemental strand, 2504 - 2336
Alignment:
Q  1 tctctcatccgctgataagaaatctgcaagactagcagctgaagaaagaatcggtacata-cattcacgatgaacgcatcggtgttctaattgaagtgaa 99  Q
    |||||||||||||||||||||||| |  ||||||||||  |||| ||||||||||||||| || || ||||  || ||| ||||||||||||||||||||    
T  2504 tctctcatccgctgataagaaatccgggagactagcagaagaaggaagaatcggtacatatcactcgcgattcacacattggtgttctaattgaagtgaa 2405  T
Q  100 ctgtgaaaccgactttgtcggaagaagtgagaaattcaaggagttggttgatgatctagcaatgcaagt 168  Q
    | |||||||||||||||| || |||||||||||||| |||||||||||||| ||||| |||||||||||    
T  2404 cggtgaaaccgactttgttggcagaagtgagaaatttaaggagttggttgacgatcttgcaatgcaagt 2336  T

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Target: scaffold0428; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 46 - 138
Target Start/End: Original strand, 15189 - 15281
Alignment:
Q  46 aagaatcggtacatacattcacgatgaacgcatcggtgttctaattgaagtgaactgtgaaaccgactttgtcggaagaagtgagaaattcaa 138  Q
    |||||| ||||||||||||||||||  || |||| |||||||||||||||| |||||||||||||||||||  || |||||| ||||||||||    
T  15189 aagaattggtacatacattcacgattcacacatcagtgttctaattgaagttaactgtgaaaccgactttgatggcagaagttagaaattcaa 15281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 11 - 135
Target Start/End: Original strand, 13771 - 13895
Alignment:
Q  11 gctgataagaaatctgcaagactagcagctgaagaaagaatcggtacatacattcacgatgaacgcatcggtgttctaattgaagtgaactgtgaaaccg 110  Q
    ||||| |||||||| | |||| ||  |||||||| | ||||| |||| ||||||||||||  |||||| ||| ||||| ||||||| |||||||| || |    
T  13771 gctgacaagaaatccggaagattaaaagctgaaggaggaatcagtacctacattcacgattcacgcattggttttctatttgaagttaactgtgatactg 13870  T
Q  111 actttgtcggaagaagtgagaaatt 135  Q
    ||||| | || ||||||||||||||    
T  13871 acttttttggcagaagtgagaaatt 13895  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 195 - 232
Target Start/End: Original strand, 26512662 - 26512699
Alignment:
Q  195 aaaacacaacatatgtcttccttgaagtgcatgattcg 232  Q
    ||||||||||||||||||||||||||| |||| |||||    
T  26512662 aaaacacaacatatgtcttccttgaagcgcatcattcg 26512699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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