View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8110_low_8 (Length: 244)

Name: NF8110_low_8
Description: NF8110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8110_low_8
NF8110_low_8
[»] chr8 (4 HSPs)
chr8 (112-207)||(44734313-44734406)
chr8 (117-207)||(44732002-44732090)
chr8 (10-45)||(44732164-44732199)
chr8 (10-45)||(44734477-44734512)
[»] chr5 (4 HSPs)
chr5 (112-207)||(32798167-32798260)
chr5 (112-207)||(32800479-32800572)
chr5 (7-45)||(32798327-32798365)
chr5 (10-45)||(32800639-32800674)
[»] chr2 (8 HSPs)
chr2 (112-207)||(45336420-45336513)
chr2 (112-207)||(45338732-45338825)
chr2 (146-207)||(1454088-1454149)
chr2 (146-206)||(14662493-14662553)
chr2 (112-207)||(17649032-17649125)
chr2 (152-208)||(132826-132882)
chr2 (10-45)||(45336580-45336615)
chr2 (10-45)||(45338892-45338927)
[»] chr3 (7 HSPs)
chr3 (112-207)||(28784674-28784767)
chr3 (112-207)||(48707585-48707678)
chr3 (145-207)||(48023921-48023983)
chr3 (112-171)||(5353449-5353506)
chr3 (163-207)||(5354551-5354595)
chr3 (10-45)||(5353345-5353380)
chr3 (10-45)||(28784835-28784870)
[»] chr1 (4 HSPs)
chr1 (112-206)||(9535417-9535509)
chr1 (112-207)||(1550317-1550411)
chr1 (145-191)||(47695723-47695769)
chr1 (10-45)||(1550478-1550513)
[»] chr4 (3 HSPs)
chr4 (113-208)||(22804771-22804864)
chr4 (10-45)||(22804932-22804967)
chr4 (146-206)||(7230887-7230946)
[»] chr7 (2 HSPs)
chr7 (112-209)||(13108714-13108808)
chr7 (112-207)||(13111006-13111099)
[»] chr6 (1 HSPs)
chr6 (146-209)||(6723624-6723687)


Alignment Details
Target: chr8 (Bit Score: 81; Significance: 3e-38; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 112 - 207
Target Start/End: Complemental strand, 44734406 - 44734313
Alignment:
Q  112 caacaatgttttgtgaacaaagtactaaaagctttaagatactttgatacattaaacttaagcatacactacaaatatatagagccaagccataag 207  Q
    |||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  44734406 caacaatgttttgtgaacaaagtactaaaagct--aagatactttgatacattaaacttaagcatacactacaaatatatagagtcaagccataag 44734313  T

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Target: chr8; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 117 - 207
Target Start/End: Complemental strand, 44732090 - 44732002
Alignment:
Q  117 atgttttgtgaacaaagtactaaaagctttaagatactttgatacattaaacttaagcatacactacaaatatatagagccaagccataag 207  Q
    |||||||||||| |||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  44732090 atgttttgtgaaaaaagtactaaaagct--aagatactttgatacattaaacttaagcatacactacaaatatatagagtcaagccataag 44732002  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 45
Target Start/End: Complemental strand, 44732199 - 44732164
Alignment:
Q  10 gttagcttttgcaaaggcagcagaatcaataagctc 45  Q
    ||||||||||||||||||||||||| ||||||||||    
T  44732199 gttagcttttgcaaaggcagcagaagcaataagctc 44732164  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 45
Target Start/End: Complemental strand, 44734512 - 44734477
Alignment:
Q  10 gttagcttttgcaaaggcagcagaatcaataagctc 45  Q
    ||||||||||||||||||||||||| ||||||||||    
T  44734512 gttagcttttgcaaaggcagcagaagcaataagctc 44734477  T

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Target: chr5 (Bit Score: 81; Significance: 3e-38; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 112 - 207
Target Start/End: Complemental strand, 32798260 - 32798167
Alignment:
Q  112 caacaatgttttgtgaacaaagtactaaaagctttaagatactttgatacattaaacttaagcatacactacaaatatatagagccaagccataag 207  Q
    |||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  32798260 caacaatgttttgtgaacaaagtactaaaagct--aagatactttgatacattaaacttaagcatacaatacaaatatatagagccaagccataag 32798167  T

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Target: chr5; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 112 - 207
Target Start/End: Complemental strand, 32800572 - 32800479
Alignment:
Q  112 caacaatgttttgtgaacaaagtactaaaagctttaagatactttgatacattaaacttaagcatacactacaaatatatagagccaagccataag 207  Q
    |||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  32800572 caacaatgttttgtgaacaaagtactaaaagct--aagatactttgatacattaaacttaagcatacaatacaaatatatagagccaagccataag 32800479  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 7 - 45
Target Start/End: Complemental strand, 32798365 - 32798327
Alignment:
Q  7 accgttagcttttgcaaaggcagcagaatcaataagctc 45  Q
    |||||||||||||||||||||||||||| ||||||||||    
T  32798365 accgttagcttttgcaaaggcagcagaagcaataagctc 32798327  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 45
Target Start/End: Complemental strand, 32800674 - 32800639
Alignment:
Q  10 gttagcttttgcaaaggcagcagaatcaataagctc 45  Q
    ||||||||||||||||||||||||| ||||||||||    
T  32800674 gttagcttttgcaaaggcagcagaagcaataagctc 32800639  T

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Target: chr2 (Bit Score: 81; Significance: 3e-38; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 112 - 207
Target Start/End: Complemental strand, 45336513 - 45336420
Alignment:
Q  112 caacaatgttttgtgaacaaagtactaaaagctttaagatactttgatacattaaacttaagcatacactacaaatatatagagccaagccataag 207  Q
    |||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  45336513 caacaatgttttgtgaacaaagtactaaaagct--aagatactttgatacattaaacttaagcatacaatacaaatatatagagccaagccataag 45336420  T

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Target: chr2; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 112 - 207
Target Start/End: Complemental strand, 45338825 - 45338732
Alignment:
Q  112 caacaatgttttgtgaacaaagtactaaaagctttaagatactttgatacattaaacttaagcatacactacaaatatatagagccaagccataag 207  Q
    |||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  45338825 caacaatgttttgtgaacaaagtactaaaagct--aagatactttgatacattaaacttaagcatacaatacaaatatatagagccaagccataag 45338732  T

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Target: chr2; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 146 - 207
Target Start/End: Complemental strand, 1454149 - 1454088
Alignment:
Q  146 taagatactttgatacattaaacttaagcatacactacaaatatatagagccaagccataag 207  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  1454149 taagatactttgatacattaaactgaagcatacactacaaatatatagagccaagccataag 1454088  T

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Target: chr2; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 146 - 206
Target Start/End: Complemental strand, 14662553 - 14662493
Alignment:
Q  146 taagatactttgatacattaaacttaagcatacactacaaatatatagagccaagccataa 206  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  14662553 taagatactttgatacattaaactgaagcatacactacaaatatatagagccaagccataa 14662493  T

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Target: chr2; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 112 - 207
Target Start/End: Complemental strand, 17649125 - 17649032
Alignment:
Q  112 caacaatgttttgtgaacaaagtactaaaagctttaagatactttgatacattaaacttaagcatacactacaaatatatagagccaagccataag 207  Q
    ||||||||||||||||||||||||  |||| ||  |||||||||||||||||| | || |||||||||  ||||||||||||||||||||||||||    
T  17649125 caacaatgttttgtgaacaaagtaaaaaaaact--aagatactttgatacatttagctgaagcatacataacaaatatatagagccaagccataag 17649032  T

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Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 152 - 208
Target Start/End: Complemental strand, 132882 - 132826
Alignment:
Q  152 actttgatacattaaacttaagcatacactacaaatatatagagccaagccataagt 208  Q
    ||||| |||||| ||||| ||||||||||||||||||||||||| ||||||||||||    
T  132882 actttaatacatcaaactgaagcatacactacaaatatatagaggcaagccataagt 132826  T

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Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 45
Target Start/End: Complemental strand, 45336615 - 45336580
Alignment:
Q  10 gttagcttttgcaaaggcagcagaatcaataagctc 45  Q
    ||||||||||||||||||||||||| ||||||||||    
T  45336615 gttagcttttgcaaaggcagcagaagcaataagctc 45336580  T

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Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 45
Target Start/End: Complemental strand, 45338927 - 45338892
Alignment:
Q  10 gttagcttttgcaaaggcagcagaatcaataagctc 45  Q
    ||||||||||||||||||||||||| ||||||||||    
T  45338927 gttagcttttgcaaaggcagcagaagcaataagctc 45338892  T

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Target: chr3 (Bit Score: 77; Significance: 7e-36; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 112 - 207
Target Start/End: Complemental strand, 28784767 - 28784674
Alignment:
Q  112 caacaatgttttgtgaacaaagtactaaaagctttaagatactttgatacattaaacttaagcatacactacaaatatatagagccaagccataag 207  Q
    |||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||    
T  28784767 caacaatgttttgtgaacaaagtactaaaagct--aagatactttgatacattaaacttaagcatacactacaaatatatagaatcaagccataag 28784674  T

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Target: chr3; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 112 - 207
Target Start/End: Original strand, 48707585 - 48707678
Alignment:
Q  112 caacaatgttttgtgaacaaagtactaaaagctttaagatactttgatacattaaacttaagcatacactacaaatatatagagccaagccataag 207  Q
    ||||||| |||||||||||||||||||||||||  ||||||||||||||| ||||| ||||||||||||||||||||||||||| |||||||||||    
T  48707585 caacaatattttgtgaacaaagtactaaaagct--aagatactttgatacgttaaatttaagcatacactacaaatatatagagtcaagccataag 48707678  T

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Target: chr3; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 145 - 207
Target Start/End: Original strand, 48023921 - 48023983
Alignment:
Q  145 ttaagatactttgatacattaaacttaagcatacactacaaatatatagagccaagccataag 207  Q
    |||||||||||| |||||||||||| ||||||||||||||||||||||||| |||||||||||    
T  48023921 ttaagatacttttatacattaaactgaagcatacactacaaatatatagagtcaagccataag 48023983  T

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Target: chr3; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 112 - 171
Target Start/End: Original strand, 5353449 - 5353506
Alignment:
Q  112 caacaatgttttgtgaacaaagtactaaaagctttaagatactttgatacattaaactta 171  Q
    ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  5353449 caacaatgttttgtgaacaaagtactaaaagc--taagatactttgatacattaaactta 5353506  T

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Target: chr3; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 163 - 207
Target Start/End: Original strand, 5354551 - 5354595
Alignment:
Q  163 ttaaacttaagcatacactacaaatatatagagccaagccataag 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  5354551 ttaaacttaagcatacactacaaatatatagagccaagccataag 5354595  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 45
Target Start/End: Original strand, 5353345 - 5353380
Alignment:
Q  10 gttagcttttgcaaaggcagcagaatcaataagctc 45  Q
    ||||||||||||||||||||||||| ||||||||||    
T  5353345 gttagcttttgcaaaggcagcagaagcaataagctc 5353380  T

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Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 45
Target Start/End: Complemental strand, 28784870 - 28784835
Alignment:
Q  10 gttagcttttgcaaaggcagcagaatcaataagctc 45  Q
    ||||||||||||||||||||||||| ||||||||||    
T  28784870 gttagcttttgcaaaggcagcagaagcaataagctc 28784835  T

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Target: chr1 (Bit Score: 76; Significance: 3e-35; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 112 - 206
Target Start/End: Complemental strand, 9535509 - 9535417
Alignment:
Q  112 caacaatgttttgtgaacaaagtactaaaagctttaagatactttgatacattaaacttaagcatacactacaaatatatagagccaagccataa 206  Q
    |||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||    
T  9535509 caacaatgttttgtgaacaaagtactaaaagct--aagatactttgatacattaaacttaaacatacactacaaatatatagagtcaagccataa 9535417  T

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Target: chr1; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 112 - 207
Target Start/End: Complemental strand, 1550411 - 1550317
Alignment:
Q  112 caacaatgttttgtgaacaaagtactaaaa-gctttaagatactttgatacattaaacttaagcatacactacaaatatatagagccaagccataag 207  Q
    |||||||||||||||||||||||||||||| |||  ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  1550411 caacaatgttttgtgaacaaagtactaaaaagct--aagatactttgatacattaaacttaagcatacattacaaatatatagagccaagccataag 1550317  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 145 - 191
Target Start/End: Original strand, 47695723 - 47695769
Alignment:
Q  145 ttaagatactttgatacattaaacttaagcatacactacaaatatat 191  Q
    |||||||| |||||||||||||||| ||||||||||| |||||||||    
T  47695723 ttaagataatttgatacattaaactaaagcatacactgcaaatatat 47695769  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 45
Target Start/End: Complemental strand, 1550513 - 1550478
Alignment:
Q  10 gttagcttttgcaaaggcagcagaatcaataagctc 45  Q
    ||||||||||||||||||||||||| ||||||||||    
T  1550513 gttagcttttgcaaaggcagcagaagcaataagctc 1550478  T

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Target: chr4 (Bit Score: 73; Significance: 2e-33; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 113 - 208
Target Start/End: Complemental strand, 22804864 - 22804771
Alignment:
Q  113 aacaatgttttgtgaacaaagtactaaaagctttaagatactttgatacattaaacttaagcatacactacaaatatatagagccaagccataagt 208  Q
    |||||| ||||||||| |||||||||||||  |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  22804864 aacaatattttgtgaaaaaagtactaaaag--ttaagatactttgatacattaaacttaaacatacactacaaatatatagagccaagccataagt 22804771  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 45
Target Start/End: Complemental strand, 22804967 - 22804932
Alignment:
Q  10 gttagcttttgcaaaggcagcagaatcaataagctc 45  Q
    ||||||||||||||||||||||||| ||||||||||    
T  22804967 gttagcttttgcaaaggcagcagaagcaataagctc 22804932  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 206
Target Start/End: Original strand, 7230887 - 7230946
Alignment:
Q  146 taagatactttgatacattaaacttaagcatacactacaaatatatagagccaagccataa 206  Q
    ||||||||||||| |||||||  | |||||||||  ||||| |||||||||||||||||||    
T  7230887 taagatactttgacacattaagttaaagcatacataacaaa-atatagagccaagccataa 7230946  T

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Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 112 - 209
Target Start/End: Original strand, 13108714 - 13108808
Alignment:
Q  112 caacaatgttttgtgaacaaagtactaaaagctttaagatactttgatacattaaacttaagcatacactacaaatatatagagccaagccataagtt 209  Q
    ||||||||||||||||||||||||  |||||||  ||||||||||||||||||||||| ||||||||||||||||||||| ||| |||||||||||||    
T  13108714 caacaatgttttgtgaacaaagtaa-aaaagct--aagatactttgatacattaaactgaagcatacactacaaatatatggagtcaagccataagtt 13108808  T

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Target: chr7; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 112 - 207
Target Start/End: Original strand, 13111006 - 13111099
Alignment:
Q  112 caacaatgttttgtgaacaaagtactaaaagctttaagatactttgatacattaaacttaagcatacactacaaatatatagagccaagccataag 207  Q
    ||||||| |||||||||||||||| ||||| ||  || ||| |||||||||||||||| ||||||| | ||||||||||| |||||||||||||||    
T  13111006 caacaatattttgtgaacaaagtaataaaaact--aaaatattttgatacattaaactgaagcataaaatacaaatatattgagccaagccataag 13111099  T

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Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 146 - 209
Target Start/End: Complemental strand, 6723687 - 6723624
Alignment:
Q  146 taagatactttgatacattaaacttaagcatacactacaaatatatagagccaagccataagtt 209  Q
    ||||||| |||||||||||||||| || ||||||||| ||||||||||||||||| ||||||||    
T  6723687 taagatattttgatacattaaactaaatcatacactataaatatatagagccaagtcataagtt 6723624  T

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