View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8111_low_1 (Length: 859)
Name: NF8111_low_1
Description: NF8111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8111_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 99; Significance: 2e-48; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 704 - 822
Target Start/End: Complemental strand, 36457924 - 36457806
Alignment:
| Q |
704 |
aaataagatgcaaatgagtacatgaggtactcaaccccaatacacaatgttcaacttctataacattctaaatagcataaactccagccgcagaatgtca |
803 |
Q |
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| T |
36457924 |
aaataagatgcatatgagtacataaggtactcaaccccaatacacaatgttcaacttttataacattctaaatagcataaactccagccagagaatgtca |
36457825 |
T |
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| Q |
804 |
ttttcggtctgctacctat |
822 |
Q |
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| T |
36457824 |
ttttcggtctgctacctat |
36457806 |
T |
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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 634 - 703
Target Start/End: Complemental strand, 36458132 - 36458064
Alignment:
| Q |
634 |
attatccaaccaatggcatactcctcctaggtgatagaaataatttatagcaagctctaattcaaaataa |
703 |
Q |
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| T |
36458132 |
attatccaaccaatggcatgctcctcctaggtgatacaagtaatttgtag-aagctctaagtcgaaataa |
36458064 |
T |
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