View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8111_low_10 (Length: 341)

Name: NF8111_low_10
Description: NF8111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8111_low_10
NF8111_low_10
[»] chr7 (29 HSPs)
chr7 (3-161)||(20606192-20606350)
chr7 (3-161)||(20611974-20612133)
chr7 (3-161)||(20609485-20609644)
chr7 (225-326)||(20606414-20606515)
chr7 (225-326)||(20609715-20609816)
chr7 (225-326)||(20612189-20612290)
chr7 (3-161)||(23582535-23582694)
chr7 (3-142)||(13072322-13072460)
chr7 (34-161)||(23581606-23581732)
chr7 (52-160)||(32073222-32073330)
chr7 (11-82)||(44832454-44832525)
chr7 (11-161)||(43183910-43184060)
chr7 (10-160)||(31252244-31252395)
chr7 (11-161)||(8394701-8394851)
chr7 (11-161)||(36631392-36631542)
chr7 (277-326)||(20607280-20607329)
chr7 (13-161)||(28837241-28837390)
chr7 (11-161)||(3113562-3113712)
chr7 (11-161)||(5556039-5556189)
chr7 (11-73)||(8867261-8867323)
chr7 (11-77)||(12224509-12224575)
chr7 (11-73)||(26625320-26625382)
chr7 (11-73)||(38637912-38637974)
chr7 (11-67)||(14776640-14776696)
chr7 (11-67)||(36658743-36658799)
chr7 (225-291)||(13072210-13072276)
chr7 (11-73)||(37001770-37001832)
chr7 (257-313)||(23090165-23090221)
chr7 (240-297)||(23581812-23581871)
[»] chr2 (27 HSPs)
chr2 (18-161)||(40653867-40654010)
chr2 (3-161)||(26591609-26591767)
chr2 (3-161)||(18829424-18829582)
chr2 (3-161)||(17373287-17373437)
chr2 (225-297)||(26591840-26591912)
chr2 (31-161)||(15512088-15512221)
chr2 (11-161)||(45419158-45419308)
chr2 (10-69)||(37621595-37621654)
chr2 (11-161)||(12756279-12756429)
chr2 (11-161)||(32126629-32126779)
chr2 (225-303)||(37621366-37621444)
chr2 (11-67)||(42442561-42442617)
chr2 (11-161)||(2286364-2286514)
chr2 (11-161)||(8058785-8058935)
chr2 (3-69)||(30325738-30325804)
chr2 (11-67)||(6403337-6403393)
chr2 (11-67)||(17444574-17444630)
chr2 (11-67)||(35963267-35963323)
chr2 (11-67)||(41251167-41251223)
chr2 (11-67)||(45121784-45121840)
chr2 (3-69)||(816591-816657)
chr2 (273-310)||(15441605-15441642)
chr2 (239-304)||(15512292-15512357)
chr2 (11-67)||(2957680-2957736)
chr2 (15-67)||(7072070-7072122)
chr2 (11-67)||(26162238-26162294)
chr2 (11-67)||(31581155-31581211)
[»] scaffold0495 (2 HSPs)
scaffold0495 (3-161)||(8588-8746)
scaffold0495 (225-297)||(8813-8887)
[»] chr6 (11 HSPs)
chr6 (3-161)||(10231868-10232026)
chr6 (3-161)||(28931576-28931735)
chr6 (225-303)||(28931800-28931878)
chr6 (11-67)||(13838376-13838432)
chr6 (11-161)||(28997305-28997455)
chr6 (11-161)||(34948223-34948373)
chr6 (11-67)||(399195-399251)
chr6 (225-297)||(10232091-10232165)
chr6 (247-309)||(23217363-23217425)
chr6 (3-92)||(11797063-11797151)
chr6 (245-310)||(34638815-34638882)
[»] chr5 (18 HSPs)
chr5 (5-161)||(30922363-30922527)
chr5 (12-161)||(8788394-8788544)
chr5 (3-161)||(15959387-15959545)
chr5 (11-161)||(31501159-31501310)
chr5 (11-161)||(1775817-1775967)
chr5 (11-161)||(31680942-31681092)
chr5 (11-161)||(33430896-33431046)
chr5 (3-67)||(38268956-38269020)
chr5 (11-73)||(37255180-37255242)
chr5 (11-67)||(16333435-16333491)
chr5 (11-67)||(26282851-26282907)
chr5 (225-293)||(32279734-32279802)
chr5 (11-67)||(36293154-36293210)
chr5 (237-293)||(36716627-36716683)
chr5 (3-66)||(18266143-18266206)
chr5 (225-297)||(34223724-34223797)
chr5 (31-147)||(30297426-30297542)
chr5 (1-69)||(31271972-31272040)
[»] chr8 (19 HSPs)
chr8 (3-154)||(29892006-29892154)
chr8 (3-161)||(29351929-29352087)
chr8 (3-161)||(32539919-32540077)
chr8 (3-151)||(32750473-32750620)
chr8 (11-88)||(40401021-40401098)
chr8 (3-67)||(17479997-17480061)
chr8 (11-147)||(34136257-34136393)
chr8 (11-161)||(4404583-4404733)
chr8 (11-73)||(16787555-16787617)
chr8 (12-161)||(15863063-15863211)
chr8 (11-67)||(3648328-3648384)
chr8 (11-67)||(29727918-29727974)
chr8 (11-67)||(39915092-39915148)
chr8 (11-67)||(42231512-42231568)
chr8 (246-304)||(35402135-35402193)
chr8 (225-294)||(32750699-32750767)
chr8 (10-67)||(35852474-35852531)
chr8 (11-67)||(2728729-2728785)
chr8 (3-67)||(6481070-6481134)
[»] chr4 (30 HSPs)
chr4 (3-161)||(9415466-9415625)
chr4 (3-161)||(26546746-26546899)
chr4 (3-140)||(31853794-31853931)
chr4 (6-161)||(4038146-4038301)
chr4 (11-161)||(35546527-35546677)
chr4 (11-161)||(28876756-28876906)
chr4 (11-73)||(3292426-3292488)
chr4 (11-161)||(6236085-6236235)
chr4 (11-73)||(6689765-6689827)
chr4 (11-73)||(30216275-30216337)
chr4 (3-161)||(39994423-39994584)
chr4 (11-73)||(42333304-42333366)
chr4 (11-73)||(43143114-43143176)
chr4 (1-67)||(48130543-48130609)
chr4 (3-56)||(9070847-9070900)
chr4 (11-67)||(13012766-13012822)
chr4 (11-147)||(17510683-17510819)
chr4 (11-67)||(20129891-20129947)
chr4 (11-67)||(26438812-26438868)
chr4 (11-67)||(34406817-34406873)
chr4 (11-67)||(43356482-43356538)
chr4 (11-67)||(47501351-47501407)
chr4 (11-66)||(40529662-40529717)
chr4 (9-159)||(20628970-20629120)
chr4 (30-88)||(29134145-29134203)
chr4 (225-295)||(31854015-31854085)
chr4 (14-67)||(13390983-13391036)
chr4 (11-67)||(25931285-25931341)
chr4 (11-67)||(36381882-36381938)
chr4 (15-67)||(48989908-48989960)
[»] chr1 (13 HSPs)
chr1 (3-161)||(17744692-17744850)
chr1 (3-88)||(42412421-42412505)
chr1 (1-67)||(28463502-28463568)
chr1 (11-73)||(35908103-35908165)
chr1 (225-290)||(17744915-17744980)
chr1 (12-161)||(23313571-23313720)
chr1 (11-67)||(3829557-3829613)
chr1 (11-67)||(11957885-11957941)
chr1 (131-161)||(17457694-17457724)
chr1 (11-161)||(42310381-42310531)
chr1 (3-56)||(41971804-41971857)
chr1 (11-67)||(7433997-7434053)
chr1 (11-67)||(17445869-17445925)
[»] chr3 (20 HSPs)
chr3 (3-161)||(16094596-16094754)
chr3 (11-161)||(8257418-8257568)
chr3 (3-92)||(35937789-35937882)
chr3 (33-140)||(219072-219178)
chr3 (11-161)||(45183555-45183705)
chr3 (1-69)||(10352832-10352900)
chr3 (11-161)||(6268865-6269015)
chr3 (11-73)||(6503099-6503161)
chr3 (11-73)||(6930423-6930485)
chr3 (11-161)||(22967883-22968033)
chr3 (11-161)||(40081181-40081331)
chr3 (11-151)||(29564600-29564741)
chr3 (11-67)||(5135863-5135919)
chr3 (11-67)||(19390724-19390780)
chr3 (117-161)||(19814605-19814649)
chr3 (11-67)||(39772368-39772424)
chr3 (15-73)||(33041529-33041587)
chr3 (3-92)||(53311899-53311985)
chr3 (225-306)||(19814460-19814541)
chr3 (3-67)||(27912571-27912635)
[»] scaffold0069 (1 HSPs)
scaffold0069 (11-67)||(18136-18192)
[»] scaffold0002 (1 HSPs)
scaffold0002 (11-67)||(479990-480046)
[»] scaffold0831 (1 HSPs)
scaffold0831 (3-69)||(3444-3510)


Alignment Details
Target: chr7 (Bit Score: 95; Significance: 2e-46; HSPs: 29)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 3 - 161
Target Start/End: Original strand, 20606192 - 20606350
Alignment:
Q  3 tttgacccgtgagtatacgcttactcagaacaaaattgcaatttcacacgttttagttgaaaaataataatcaatcgaaacatctttgaagagctacgaa 102  Q
    ||||| |||| |||||| |||||||| |||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||| | |||||||    
T  20606192 tttgatccgtcagtatatgcttactcggaacaaaattgcaatttcgcacgtttttgttgaaaaataataatcgatcgaaacatctttgaaaacctacgaa 20606291  T
Q  103 atcttgcggatccattttttgtatttctatagatgtctctacaaacaatcaactcaaaa 161  Q
    || |||| ||| | ||||||||||||||||| |||||||| |||||||||| |||||||    
T  20606292 attttgcagattctttttttgtatttctataaatgtctctgcaaacaatcagctcaaaa 20606350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 3 - 161
Target Start/End: Original strand, 20611974 - 20612133
Alignment:
Q  3 tttgacccgtgagtatacgcttactcagaacaaaattgcaatttcacacgttttagttgaaaaataa-taatcaatcgaaacatctttgaagagctacga 101  Q
    |||||| ||||||||||||||||||| ||| |||||||| ||||| |||||||| ||| ||||| || ||||| ||||||||||||||||| | ||||||    
T  20611974 tttgacgcgtgagtatacgcttactcggaaaaaaattgctatttcgcacgtttttgttaaaaaaaaaataatcgatcgaaacatctttgaaaatctacga 20612073  T
Q  102 aatcttgcggatccattttttgtatttctatagatgtctctacaaacaatcaactcaaaa 161  Q
    |||  ||| ||||| |||||||||||||||||||||||||| |||| || || |||||||    
T  20612074 aattgtgcagatcctttttttgtatttctatagatgtctctgcaaaaaaacagctcaaaa 20612133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 3 - 161
Target Start/End: Original strand, 20609485 - 20609644
Alignment:
Q  3 tttgacccgtgagtatacgcttactcagaacaaaattgcaatttcacacgttttagttgaaaaataa-taatcaatcgaaacatctttgaagagctacga 101  Q
    ||||||||||||||||||||||| || ||| |||||||| ||||  |||||||| ||| ||||| || ||||| ||||||||||||||||| | ||||||    
T  20609485 tttgacccgtgagtatacgcttattcggaaaaaaattgctattttgcacgtttttgttaaaaaaaaaataatcgatcgaaacatctttgaaaacctacga 20609584  T
Q  102 aatcttgcggatccattttttgtatttctatagatgtctctacaaacaatcaactcaaaa 161  Q
    ||| |||| ||||| |||||||| ||||||||||||||||| |||| || || |||||||    
T  20609585 aattttgcagatcctttttttgtgtttctatagatgtctctgcaaaaaaacagctcaaaa 20609644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 225 - 326
Target Start/End: Original strand, 20606414 - 20606515
Alignment:
Q  225 taattaattcaaccttagttgaaaaattataattttatgtataaaatcatattttaatgtcctaaacatgcctcaaaaaattcaacctcaaagaagattt 324  Q
    |||||||||||||||||||||||||||||||| ||| ||| |||| ||||||||||||||||||||||||| | |||| |||||||||| ||||||||||    
T  20606414 taattaattcaaccttagttgaaaaattataaatttttgtgtaaagtcatattttaatgtcctaaacatgcttgaaaatattcaacctctaagaagattt 20606513  T
Q  325 tt 326  Q
    ||    
T  20606514 tt 20606515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 225 - 326
Target Start/End: Original strand, 20609715 - 20609816
Alignment:
Q  225 taattaattcaaccttagttgaaaaattataattttatgtataaaatcatattttaatgtcctaaacatgcctcaaaaaattcaacctcaaagaagattt 324  Q
    |||||||||||||||||||||||||||||||||||| |||  ||| || ||||||| |||||||||||||| | ||||||||||||||| ||||||||||    
T  20609715 taattaattcaaccttagttgaaaaattataattttttgtggaaagtcgtattttagtgtcctaaacatgcttgaaaaaattcaacctctaagaagattt 20609814  T
Q  325 tt 326  Q
    ||    
T  20609815 tt 20609816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 225 - 326
Target Start/End: Original strand, 20612189 - 20612290
Alignment:
Q  225 taattaattcaaccttagttgaaaaattataattttatgtataaaatcatattttaatgtcctaaacatgcctcaaaaaattcaacctcaaagaagattt 324  Q
    |||||||||||| ||||||||||||||||||||||| |||  ||| || ||||||| |||||||||||||| | ||||||||||||||| ||||||||||    
T  20612189 taattaattcaatcttagttgaaaaattataattttttgtggaaagtcgtattttagtgtcctaaacatgcttgaaaaaattcaacctctaagaagattt 20612288  T
Q  325 tt 326  Q
    ||    
T  20612289 tt 20612290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 3 - 161
Target Start/End: Original strand, 23582535 - 23582694
Alignment:
Q  3 tttgacccgtgagtatacgcttactcagaacaaaattgcaatttcacacgttttagttgaaaaataataatcaatcgaaacatctttgaagagctacgaa 102  Q
    |||||||||||| ||||| ||||||| |||||||||||||||||  || |||||||||||||||| | ||| ||| ||||  ||||||||  ||||| ||    
T  23582535 tttgacccgtgattatactcttactcggaacaaaattgcaatttagcaagttttagttgaaaaattaaaataaatagaaatgtctttgaattgctacaaa 23582634  T
Q  103 atcttgcggatccattttttgtatttctatagatgtct-ctacaaacaatcaactcaaaa 161  Q
    |  |||| ||||| || | | ||||||||||||||||| || |||||||||| |||||||    
T  23582635 actttgcagatcctttatatctatttctatagatgtctactgcaaacaatcagctcaaaa 23582694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 3 - 142
Target Start/End: Complemental strand, 13072460 - 13072322
Alignment:
Q  3 tttgacccgtgagtatacgcttactcagaacaaaattgcaatttcacacgttttagttgaaaaataataatcaatcgaaacatctttgaagagctacgaa 102  Q
    |||||||||||||||||||||||||| ||||||||||  |||||  || ||||| |||||||||||| ||  ||||||||||| ||| ||  ||||||||    
T  13072460 tttgacccgtgagtatacgcttactctgaacaaaattataattttgcatgttttggttgaaaaataa-aaaaaatcgaaacatttttaaaatgctacgaa 13072362  T
Q  103 atcttgcggatccattttttgtatttctatagatgtctct 142  Q
    || ||||  |||  |||  |||||||||||||||||||||    
T  13072361 attttgcatatcattttcatgtatttctatagatgtctct 13072322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 34 - 161
Target Start/End: Original strand, 23581606 - 23581732
Alignment:
Q  34 aaaattgcaatttcacacgttttagttgaaaaataa-taatcaatcgaaacatctttgaagagctacgaaatcttgcggatccattttttgtatttctat 132  Q
    |||||||||||||| |||||||| |||||||| ||| |||  ||| ||||||||||| ||  | ||| |||  |||| ||||| |||| |||||||||||    
T  23581606 aaaattgcaatttcgcacgttttggttgaaaattaaataa--aatggaaacatctttaaaatgttacaaaactttgctgatcctttttatgtatttctat 23581703  T
Q  133 agatgtctctacaaacaatcaactcaaaa 161  Q
    |||||||||| |||| |||||||||||||    
T  23581704 agatgtctctgcaaataatcaactcaaaa 23581732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 52 - 160
Target Start/End: Original strand, 32073222 - 32073330
Alignment:
Q  52 gttttagttgaaaaataataatcaatcgaaacatctttgaagagctacgaaatcttgcggatccattttttgtatttctatagatgtctctacaaacaat 151  Q
    ||||| |||||||||| | ||| ||| ||||| ||||| ||  |||||||||| || | ||||| |||| ||||||||||||||||||||| ||||||||    
T  32073222 gttttggttgaaaaattaaaattaattgaaacttctttaaaatgctacgaaattttacagatcctttttatgtatttctatagatgtctctgcaaacaat 32073321  T
Q  152 caactcaaa 160  Q
    || ||||||    
T  32073322 cagctcaaa 32073330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 11 - 82
Target Start/End: Original strand, 44832454 - 44832525
Alignment:
Q  11 gtgagtatacgcttactcagaacaaaattgcaatttcacacgttttagttgaaaaataataatcaatcgaaa 82  Q
    ||||||||| ||||||||  ||||||||||||||||| |||||||| |||||||||||| ||| ||||||||    
T  44832454 gtgagtataagcttactctaaacaaaattgcaatttcgcacgttttggttgaaaaataaaaataaatcgaaa 44832525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 11 - 161
Target Start/End: Complemental strand, 43184060 - 43183910
Alignment:
Q  11 gtgagtatacgcttactcagaacaaaattgcaatttcacacgttttagttgaaaaataataatcaatcgaaacatctttgaagagctacgaaatcttgcg 110  Q
    |||||||||||||||| | |||||||||| ||||||  |||||||| |||||||||| ||||| |||  ||||  ||| |||  |||| ||||  || |     
T  43184060 gtgagtatacgcttacgcggaacaaaatttcaattttgcacgttttggttgaaaaatcataataaatttaaacgacttcgaaatgctatgaaactttaca 43183961  T
Q  111 gatccattttttgtatttctatagatgtctctacaaacaatcaactcaaaa 161  Q
     |||| |||| ||||||| ||||||||||||| |||| ||| |||||||||    
T  43183960 tatcctttttatgtatttttatagatgtctctgcaaataatgaactcaaaa 43183910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 10 - 160
Target Start/End: Complemental strand, 31252395 - 31252244
Alignment:
Q  10 cgtgagtatacgcttactcagaacaaaattgcaatttcacacgttttagttgaaaaataataatcaatcgaaacatctttgaagagctacgaaatcttgc 109  Q
    ||||| ||||||||| ||| |||||||||||||||||  ||||||||  || |||||||| ||| ||| |||||||| |||||  | || ||||  ||||    
T  31252395 cgtgaatatacgcttgctcggaacaaaattgcaatttagcacgttttgattcaaaaataaaaataaattgaaacatcattgaaatgttatgaaactttgc 31252296  T
Q  110 ggatccattttttgta-tttctatagatgtctctacaaacaatcaactcaaa 160  Q
     ||||| |||| |||| ||| ||||||||| | |||||| ||||| ||||||    
T  31252295 agatcctttttatgtattttttatagatgtatgtacaaataatcatctcaaa 31252244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 11 - 161
Target Start/End: Original strand, 8394701 - 8394851
Alignment:
Q  11 gtgagtatacgcttactcagaacaaaattgcaatttcacacgttttagttgaaaaataataatcaatcgaaacatctttgaagagctacgaaatcttgcg 110  Q
    |||||||||||||||| | |||||||||| ||||||  ||||||| ||||||||||| | ||| |||  ||||  ||| |||  |||| ||||  || |     
T  8394701 gtgagtatacgcttacgcggaacaaaatttcaatttggcacgtttcagttgaaaaatcaaaataaatttaaacgacttcgaaatgctatgaaactttaca 8394800  T
Q  111 gatccattttttgtatttctatagatgtctctacaaacaatcaactcaaaa 161  Q
    ||||| |||| | ||||| ||||||||||||| |||| ||||| |||||||    
T  8394801 gatcctttttatctatttttatagatgtctctgcaaataatcagctcaaaa 8394851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 11 - 161
Target Start/End: Original strand, 36631392 - 36631542
Alignment:
Q  11 gtgagtatacgcttactcagaacaaaattgcaatttcacacgttttagttgaaaaataataatcaatcgaaacatctttgaagagctacgaaatcttgcg 110  Q
    |||||||||||||||| | |||||||||| ||||||  ||||||| ||||||||||| | ||| |||  ||||  ||| |||  |||| ||||  || |     
T  36631392 gtgagtatacgcttacgcggaacaaaatttcaattttgcacgtttcagttgaaaaatcaaaataaatttaaacgacttcgaaatgctatgaaactttaca 36631491  T
Q  111 gatccattttttgtatttctatagatgtctctacaaacaatcaactcaaaa 161  Q
    ||||| |||| ||||||| ||||||||||||| |||| ||| | |||||||    
T  36631492 gatcctttttatgtatttttatagatgtctctgcaaataatgagctcaaaa 36631542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 277 - 326
Target Start/End: Original strand, 20607280 - 20607329
Alignment:
Q  277 tttaatgtcctaaacatgcctcaaaaaattcaacctcaaagaagattttt 326  Q
    ||||||||||||||||||| | ||||||||||||||| ||||||||||||    
T  20607280 tttaatgtcctaaacatgcttgaaaaaattcaacctctaagaagattttt 20607329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 13 - 161
Target Start/End: Complemental strand, 28837390 - 28837241
Alignment:
Q  13 gagtatacgcttactcagaacaaaattgcaatttcacacgttttagttgaaaaataataatca-atcgaaacatctttgaagagctacgaaatcttgcgg 111  Q
    ||||||||||||||||  |||||||||||||||| |||| ||||| ||||||||||| ||  | ||||||||| |||  ||  |||| ||||  |||  |    
T  28837390 gagtatacgcttactcgaaacaaaattgcaattttacacattttaattgaaaaataaaaaaaagatcgaaacaacttcaaaatgctaagaaactttgaag 28837291  T
Q  112 atccattttttgtatttctatagatgtctctacaaacaatcaactcaaaa 161  Q
    |||| |||   |||||| |||||||| || | ||||||||||||||||||    
T  28837290 atccttttaaggtatttttatagatgcctttgcaaacaatcaactcaaaa 28837241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 161
Target Start/End: Complemental strand, 3113712 - 3113562
Alignment:
Q  11 gtgagtatacgcttactcagaacaaaattgcaatttcacacgttttagttgaaaaataataatcaatcgaaacatctttgaagagctacgaaatcttgcg 110  Q
    |||||||||||||||| | |||||||||| ||||||  ||||||| ||||||||||| | ||| |||  ||||  ||| ||   |||| ||||  || |     
T  3113712 gtgagtatacgcttacgcggaacaaaatttcaattttgcacgtttcagttgaaaaatcaaaataaatttaaacgacttcgatatgctatgaaactttaca 3113613  T
Q  111 gatccattttttgtatttctatagatgtctctacaaacaatcaactcaaaa 161  Q
    ||||| |||| || |||| ||||||||||||| |||| ||| |||||||||    
T  3113612 gatcctttttatgcatttttatagatgtctctgcaaataatgaactcaaaa 3113562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 161
Target Start/End: Original strand, 5556039 - 5556189
Alignment:
Q  11 gtgagtatacgcttactcagaacaaaattgcaatttcacacgttttagttgaaaaataataatcaatcgaaacatctttgaagagctacgaaatcttgcg 110  Q
    |||||||||||||||| | |||||||||| ||||||  ||||||| ||||||||||| | ||| |||  ||||  ||||||   | || ||||  || |     
T  5556039 gtgagtatacgcttacgcggaacaaaatttcaattttgcacgtttcagttgaaaaatcaaaataaatttaaacgactttgatatgttatgaaactttaca 5556138  T
Q  111 gatccattttttgtatttctatagatgtctctacaaacaatcaactcaaaa 161  Q
    ||||| |||| || |||| ||||||||||||| |||| ||| |||||||||    
T  5556139 gatcctttttatgcatttttatagatgtctctgcaaataatgaactcaaaa 5556189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 73
Target Start/End: Complemental strand, 8867323 - 8867261
Alignment:
Q  11 gtgagtatacgcttactcagaacaaaattgcaatttcacacgttttagttgaaaaataataat 73  Q
    |||||||||||||||| | |||||||||| ||||||  |||||||| |||||||||| |||||    
T  8867323 gtgagtatacgcttacgcggaacaaaatttcaattttgcacgttttggttgaaaaatcataat 8867261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 77
Target Start/End: Complemental strand, 12224575 - 12224509
Alignment:
Q  11 gtgagtatacgcttactcagaacaaaattgcaatttcacacgttttagttgaaaaataataatcaat 77  Q
    ||||||||| | ||||||| ||||||||||||||||  |||||||| |||||||||| | |||||||    
T  12224575 gtgagtatatgattactcataacaaaattgcaattttgcacgttttggttgaaaaatcaaaatcaat 12224509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 73
Target Start/End: Original strand, 26625320 - 26625382
Alignment:
Q  11 gtgagtatacgcttactcagaacaaaattgcaatttcacacgttttagttgaaaaataataat 73  Q
    |||||||||||||||| | |||||||||| ||||||  |||||||| |||||||||| |||||    
T  26625320 gtgagtatacgcttacgcggaacaaaatttcaattttgcacgttttggttgaaaaatcataat 26625382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 73
Target Start/End: Complemental strand, 38637974 - 38637912
Alignment:
Q  11 gtgagtatacgcttactcagaacaaaattgcaatttcacacgttttagttgaaaaataataat 73  Q
    |||||||||||||||| | |||||||||| ||||||  |||||||| |||||||||| |||||    
T  38637974 gtgagtatacgcttacgcggaacaaaatttcaattttgcacgttttggttgaaaaatcataat 38637912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 67
Target Start/End: Complemental strand, 14776696 - 14776640
Alignment:
Q  11 gtgagtatacgcttactcagaacaaaattgcaatttcacacgttttagttgaaaaat 67  Q
    |||||||||||||||| | |||||||||| ||||||  ||||||| |||||||||||    
T  14776696 gtgagtatacgcttacgcggaacaaaatttcaattttgcacgtttcagttgaaaaat 14776640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 67
Target Start/End: Original strand, 36658743 - 36658799
Alignment:
Q  11 gtgagtatacgcttactcagaacaaaattgcaatttcacacgttttagttgaaaaat 67  Q
    |||||||||||||||| | |||||||||| ||||||  |||||||| ||||||||||    
T  36658743 gtgagtatacgcttacgcggaacaaaatttcaattttgcacgttttggttgaaaaat 36658799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 291
Target Start/End: Complemental strand, 13072276 - 13072210
Alignment:
Q  225 taattaattcaaccttagttgaaaaattataattttatgtataaaatcatattttaatgtcctaaac 291  Q
    ||||||||||  |||||||| ||||||| ||||||| ||| |||| || |||||||||||| |||||    
T  13072276 taattaattcttccttagtttaaaaattctaattttttgtgtaaagtcctattttaatgtcttaaac 13072210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 73
Target Start/End: Complemental strand, 37001832 - 37001770
Alignment:
Q  11 gtgagtatacgcttactcagaacaaaattgcaatttcacacgttttagttgaaaaataataat 73  Q
    |||||||||||||||| | |||||||||| ||||||  ||| |||| |||||||||| |||||    
T  37001832 gtgagtatacgcttacgcggaacaaaatttcaattttgcacattttggttgaaaaatcataat 37001770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 257 - 313
Target Start/End: Original strand, 23090165 - 23090221
Alignment:
Q  257 ttttatgtataaaatcatattttaatgtcctaaacatgcctcaaaaaattcaacctc 313  Q
    |||| ||| |||| |||| |||||||||| |||||||| || |||||||||||||||    
T  23090165 ttttttgtgtaaagtcatgttttaatgtcttaaacatgtcttaaaaaattcaacctc 23090221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 240 - 297
Target Start/End: Original strand, 23581812 - 23581871
Alignment:
Q  240 tagttgaaaaattataa--ttttatgtataaaatcatattttaatgtcctaaacatgcct 297  Q
    |||||||||||||||||  |||| ||| |||| ||||||||||| |||||||| ||||||    
T  23581812 tagttgaaaaattataattttttttgtgtaaagtcatattttaacgtcctaaatatgcct 23581871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 80; Significance: 2e-37; HSPs: 27)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 18 - 161
Target Start/End: Original strand, 40653867 - 40654010
Alignment:
Q  18 tacgcttactcagaacaaaattgcaatttcacacgttttagttgaaaaataataatcaatcgaaacatctttgaagagctacgaaatcttgcggatccat 117  Q
    ||||||||||| |||||||| ||||||||| ||||||||  ||||||||||| | | ||||||||||||||||||  |||||||||| |||| ||||| |    
T  40653867 tacgcttactcggaacaaaaatgcaatttcgcacgttttgattgaaaaataaaactaaatcgaaacatctttgaaatgctacgaaattttgcagatcctt 40653966  T
Q  118 tttttgtatttctatagatgtctctacaaacaatcaactcaaaa 161  Q
    ||| |||||||||||| |||||||| ||||||||||||||||||    
T  40653967 tttatgtatttctatatatgtctctgcaaacaatcaactcaaaa 40654010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 3 - 161
Target Start/End: Original strand, 26591609 - 26591767
Alignment:
Q  3 tttgacccgtgagtatacgcttactcagaacaaaattgcaatttcacacgttttagttgaaaaataataatcaatcgaaacatctttgaagagctacgaa 102  Q
    |||||||| |||||||||| |||||| || ||||||||||||||| |||||||| |||||||||||| ||| ||| |||| |||||||||  ||||||||    
T  26591609 tttgacccatgagtatacgtttactcggatcaaaattgcaatttcgcacgttttggttgaaaaataaaaataaattgaaatatctttgaaatgctacgaa 26591708  T
Q  103 atcttgcggatccattttttgtatttctatagatgtctctacaaacaatcaactcaaaa 161  Q
    |  |||| ||||| |||| ||||||| |||||||||||||||||||||| | |||||||    
T  26591709 actttgcagatcctttttatgtatttttatagatgtctctacaaacaattagctcaaaa 26591767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 3 - 161
Target Start/End: Original strand, 18829424 - 18829582
Alignment:
Q  3 tttgacccgtgagtatacgcttactcagaacaaaattgcaatttcacacgttttagttgaaaaataataatcaatcgaaacatctttgaagagctacgaa 102  Q
    |||||||||||||||||| ||||||| |||||||||||||||||| |||||||| |||||||||| | ||| ||||||||| ||||||||  ||| ||||    
T  18829424 tttgacccgtgagtatacacttactcggaacaaaattgcaatttcgcacgttttcgttgaaaaattaaaataaatcgaaacgtctttgaaatgctgcgaa 18829523  T
Q  103 atcttgcggatccattttttgtatttctatagatgtctctacaaacaatcaactcaaaa 161  Q
    || |||| ||||  || | ||| ||||||||||||||||| || |||||||||| ||||    
T  18829524 attttgcagatcttttatatgtgtttctatagatgtctctgcagacaatcaacttaaaa 18829582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 3 - 161
Target Start/End: Complemental strand, 17373437 - 17373287
Alignment:
Q  3 tttgacccgtgagtatacgcttactcagaacaaaattgcaatttcacacgttttagttgaaaaataataatcaatcgaaacatctttgaagagctacgaa 102  Q
    ||||||||||||||||||||||| |  ||||||||||||||||||||| |||||  ||||||||        ||||||||||||||| ||  |||| |||    
T  17373437 tttgacccgtgagtatacgcttatttggaacaaaattgcaatttcacatgttttgattgaaaaa--------aatcgaaacatcttttaaatgctatgaa 17373346  T
Q  103 atcttgcggatccattttttgtatttctatagatgtctctacaaacaatcaactcaaaa 161  Q
    || |  |  |||| |||| |||||||||||| |||||||| ||||||||||||||||||    
T  17373345 atttatcatatcctttttatgtatttctatatatgtctctgcaaacaatcaactcaaaa 17373287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 225 - 297
Target Start/End: Original strand, 26591840 - 26591912
Alignment:
Q  225 taattaattcaaccttagttgaaaaattataattttatgtataaaatcatattttaatgtcctaaacatgcct 297  Q
    ||||||||||  |||||||||||||||||||||||| ||| || | |||||||||||||||||||||||||||    
T  26591840 taattaattcgtccttagttgaaaaattataattttttgtgtagagtcatattttaatgtcctaaacatgcct 26591912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 31 - 161
Target Start/End: Original strand, 15512088 - 15512221
Alignment:
Q  31 aacaaaattgcaatttcacacgttttagttgaaaaat---aataatcaatcgaaacatctttgaagagctacgaaatcttgcggatccattttttgtatt 127  Q
    ||||||||||||||||| |||||||| ||  ||||||   || ||  ||||||||||| ||| ||  |||||||| | |||| ||||| |||| ||||||    
T  15512088 aacaaaattgcaatttcgcacgttttggtctaaaaattaaaaaaacaaatcgaaacatttttaaaatgctacgaatttttgcagatcctttttatgtatt 15512187  T
Q  128 tctatagatgtctctacaaacaatcaactcaaaa 161  Q
    | ||||||||||||| |||| |||||||||||||    
T  15512188 tttatagatgtctctgcaaaaaatcaactcaaaa 15512221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 11 - 161
Target Start/End: Original strand, 45419158 - 45419308
Alignment:
Q  11 gtgagtatacgcttactcagaacaaaattgcaatttcacacgttttagttgaaaaataataatcaatcgaaacatctttgaagagctacgaaatcttgcg 110  Q
    |||||||||||||||| | |||||||||| ||||||  |||||||| |||||||||| ||||| |||  ||||  ||| |||  |||| ||||  || |     
T  45419158 gtgagtatacgcttacgcggaacaaaatttcaattttgcacgttttggttgaaaaatcataataaatttaaacgacttcgaaatgctatgaaactttaca 45419257  T
Q  111 gatccattttttgtatttctatagatgtctctacaaacaatcaactcaaaa 161  Q
     |||| |||| ||||||| ||||||||||||| |||| ||| |||||||||    
T  45419258 tatcctttttatgtatttttatagatgtctctgcaaataatgaactcaaaa 45419308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 10 - 69
Target Start/End: Complemental strand, 37621654 - 37621595
Alignment:
Q  10 cgtgagtatacgcttactcagaacaaaattgcaatttcacacgttttagttgaaaaataa 69  Q
    |||||||||| |||||||| |||||||||||||||||||||| ||||  |||||||||||    
T  37621654 cgtgagtatatgcttactcggaacaaaattgcaatttcacacattttgattgaaaaataa 37621595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 11 - 161
Target Start/End: Complemental strand, 12756429 - 12756279
Alignment:
Q  11 gtgagtatacgcttactcagaacaaaattgcaatttcacacgttttagttgaaaaataataatcaatcgaaacatctttgaagagctacgaaatcttgcg 110  Q
    |||||||||||||||  | |||||||||| ||||||  |||||||| |||||||||| ||||| |||  ||||  ||| |||  |||| ||||| || |     
T  12756429 gtgagtatacgcttatgcggaacaaaatttcaattttccacgttttggttgaaaaatcataataaatttaaacgacttcgaaatgctatgaaattttaca 12756330  T
Q  111 gatccattttttgtatttctatagatgtctctacaaacaatcaactcaaaa 161  Q
     |||| |||| ||||||| ||||||||||||| |||| ||| | |||||||    
T  12756329 tatcctttttatgtatttttatagatgtctctgcaaataatgagctcaaaa 12756279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 11 - 161
Target Start/End: Complemental strand, 32126779 - 32126629
Alignment:
Q  11 gtgagtatacgcttactcagaacaaaattgcaatttcacacgttttagttgaaaaataataatcaatcgaaacatctttgaagagctacgaaatcttgcg 110  Q
    |||||||||||||||| | |||||||||| ||||||  ||||||| ||||||||||| | ||| |||  ||||  ||| |||  |||| ||||  || |     
T  32126779 gtgagtatacgcttacgcggaacaaaatttcaatttttcacgtttcagttgaaaaatcaaaataaatttaaacgacttcgaaatgctatgaaactttaca 32126680  T
Q  111 gatccattttttgtatttctatagatgtctctacaaacaatcaactcaaaa 161  Q
    ||||| |||| ||||||| ||||||||||||| |||| ||| | |||||||    
T  32126679 gatcctttttatgtatttttatagatgtctctgcaaataatgagctcaaaa 32126629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 225 - 303
Target Start/End: Complemental strand, 37621444 - 37621366
Alignment:
Q  225 taattaattcaaccttagttgaaaaattataattttatgtataaaatcatattttaatgtcctaaacatgcctcaaaaa 303  Q
    ||||||||||| ||||||||||||||||| | |||| ||| ||   |||||||||||||||| |||||||||| |||||    
T  37621444 taattaattcatccttagttgaaaaattaaatttttttgtgtattgtcatattttaatgtcccaaacatgcctgaaaaa 37621366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 11 - 67
Target Start/End: Original strand, 42442561 - 42442617
Alignment:
Q  11 gtgagtatacgcttactcagaacaaaattgcaatttcacacgttttagttgaaaaat 67  Q
    |||||||||||||||| |||||||||||| ||||||  ||||||| |||||||||||    
T  42442561 gtgagtatacgcttacgcagaacaaaatttcaattttgcacgtttcagttgaaaaat 42442617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 161
Target Start/End: Original strand, 2286364 - 2286514
Alignment:
Q  11 gtgagtatacgcttactcagaacaaaattgcaatttcacacgttttagttgaaaaataataatcaatcgaaacatctttgaagagctacgaaatcttgcg 110  Q
    |||||||||||||||| | |||||||||| ||||||  ||||||| ||||||||||| | ||| |||  ||||  |||  ||  |||| ||||  || |     
T  2286364 gtgagtatacgcttacacggaacaaaatttcaattttgcacgtttcagttgaaaaatcaaaataaatttaaacgacttcaaaatgctatgaaactttaca 2286463  T
Q  111 gatccattttttgtatttctatagatgtctctacaaacaatcaactcaaaa 161  Q
    ||||| |||| ||||||| ||||||||||||| |||| ||| | |||||||    
T  2286464 gatcctttttatgtatttttatagatgtctctgcaaataatgagctcaaaa 2286514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 161
Target Start/End: Complemental strand, 8058935 - 8058785
Alignment:
Q  11 gtgagtatacgcttactcagaacaaaattgcaatttcacacgttttagttgaaaaataataatcaatcgaaacatctttgaagagctacgaaatcttgcg 110  Q
    |||||||||||||||| | ||||||||||  |||||  |||||||| |||||||||| | ||| | |  ||||  ||||||| || || ||||  || |     
T  8058935 gtgagtatacgcttacgcggaacaaaattttaattttgcacgttttggttgaaaaatcaaaataattttaaacgactttgaacagatatgaaactttaca 8058836  T
Q  111 gatccattttttgtatttctatagatgtctctacaaacaatcaactcaaaa 161  Q
    ||||| |||| ||||||| ||||||||||||| |||| ||| | |||||||    
T  8058835 gatcctttttatgtatttttatagatgtctctgcaaataatgagctcaaaa 8058785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 69
Target Start/End: Complemental strand, 30325804 - 30325738
Alignment:
Q  3 tttgacccgtgagtatacgcttactcagaacaaaattgcaatttcacacgttttagttgaaaaataa 69  Q
    |||||||| |||||||| ||||||||  ||||||||| |||||| ||||| ||| ||||||||||||    
T  30325804 tttgacccatgagtatatgcttactcgcaacaaaattacaattttacacgctttggttgaaaaataa 30325738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 67
Target Start/End: Complemental strand, 6403393 - 6403337
Alignment:
Q  11 gtgagtatacgcttactcagaacaaaattgcaatttcacacgttttagttgaaaaat 67  Q
    |||||||||||||||| | |||||||||| ||||||  ||||||| |||||||||||    
T  6403393 gtgagtatacgcttacgcggaacaaaatttcaattttgcacgtttcagttgaaaaat 6403337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 67
Target Start/End: Complemental strand, 17444630 - 17444574
Alignment:
Q  11 gtgagtatacgcttactcagaacaaaattgcaatttcacacgttttagttgaaaaat 67  Q
    |||||||||||||||| | |||||||||| ||||||  ||||||| |||||||||||    
T  17444630 gtgagtatacgcttacgcggaacaaaatttcaattttgcacgtttcagttgaaaaat 17444574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 67
Target Start/End: Original strand, 35963267 - 35963323
Alignment:
Q  11 gtgagtatacgcttactcagaacaaaattgcaatttcacacgttttagttgaaaaat 67  Q
    |||||||||||||||| | |||||||||| ||||||  ||||||| |||||||||||    
T  35963267 gtgagtatacgcttacgcggaacaaaatttcaattttgcacgtttcagttgaaaaat 35963323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 67
Target Start/End: Complemental strand, 41251223 - 41251167
Alignment:
Q  11 gtgagtatacgcttactcagaacaaaattgcaatttcacacgttttagttgaaaaat 67  Q
    |||||||||||||||| | |||||||||| ||||||  ||||||| |||||||||||    
T  41251223 gtgagtatacgcttacgcggaacaaaatttcaattttgcacgtttcagttgaaaaat 41251167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 67
Target Start/End: Original strand, 45121784 - 45121840
Alignment:
Q  11 gtgagtatacgcttactcagaacaaaattgcaatttcacacgttttagttgaaaaat 67  Q
    |||||||||||||||||  |||||||||| ||||||  |||||||| ||||||||||    
T  45121784 gtgagtatacgcttacttggaacaaaatttcaatttttcacgttttggttgaaaaat 45121840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 69
Target Start/End: Complemental strand, 816657 - 816591
Alignment:
Q  3 tttgacccgtgagtatacgcttactcagaacaaaattgcaatttcacacgttttagttgaaaaataa 69  Q
    |||||||||| |||||||||||||||  || ||||||||||||| || || ||| ||| ||||||||    
T  816657 tttgacccgtaagtatacgcttactcgaaataaaattgcaattttacgcgctttggttaaaaaataa 816591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 273 - 310
Target Start/End: Complemental strand, 15441642 - 15441605
Alignment:
Q  273 atattttaatgtcctaaacatgcctcaaaaaattcaac 310  Q
    ||||||||| ||||||||||||||| ||||||||||||    
T  15441642 atattttaacgtcctaaacatgcctgaaaaaattcaac 15441605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 304
Target Start/End: Original strand, 15512292 - 15512357
Alignment:
Q  239 ttagttgaaaaattataattttatgtataaaatcatattttaatgtcctaaacatgcctcaaaaaa 304  Q
    |||||| ||||||| ||||||| ||| |||  || |||||||| ||||||||||||||| ||||||    
T  15512292 ttagtttaaaaattctaattttttgtgtaatgtcgtattttaacgtcctaaacatgcctgaaaaaa 15512357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 67
Target Start/End: Complemental strand, 2957736 - 2957680
Alignment:
Q  11 gtgagtatacgcttactcagaacaaaattgcaatttcacacgttttagttgaaaaat 67  Q
    |||||||||| ||||| | |||||||||| ||||||  ||||||| |||||||||||    
T  2957736 gtgagtatacccttacgcggaacaaaatttcaattttgcacgtttcagttgaaaaat 2957680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 67
Target Start/End: Complemental strand, 7072122 - 7072070
Alignment:
Q  15 gtatacgcttactcagaacaaaattgcaatttcacacgttttagttgaaaaat 67  Q
    |||||||||||| | |||||||||| ||||||  |||||||| ||||||||||    
T  7072122 gtatacgcttacgctgaacaaaatttcaattttgcacgttttggttgaaaaat 7072070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 67
Target Start/End: Complemental strand, 26162294 - 26162238
Alignment:
Q  11 gtgagtatacgcttactcagaacaaaattgcaatttcacacgttttagttgaaaaat 67  Q
    |||| ||||||||||| | |||||||||| ||||||  |||||||| ||||||||||    
T  26162294 gtgactatacgcttacgcggaacaaaatttcaattttgcacgttttggttgaaaaat 26162238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 67
Target Start/End: Complemental strand, 31581211 - 31581155
Alignment:
Q  11 gtgagtatacgcttactcagaacaaaattgcaatttcacacgttttagttgaaaaat 67  Q
    |||||||||||||||| |  ||||||||| ||||||  ||||||| |||||||||||    
T  31581211 gtgagtatacgcttacgcgaaacaaaatttcaattttgcacgtttcagttgaaaaat 31581155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0495 (Bit Score: 71; Significance: 4e-32; HSPs: 2)
Name: scaffold0495
Description:

Target: scaffold0495; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 3 - 161
Target Start/End: Original strand, 8588 - 8746
Alignment:
Q  3 tttgacccgtgagtatacgcttactcagaacaaaattgcaatttcacacgttttagttgaaaaataataatcaatcgaaacatctttgaagagctacgaa 102  Q
    |||||| ||||| |||| | |||||||||||||||||||||||||||||||||| |||||||||||| ||  ||||||||||||||||||   ||| |||    
T  8588 tttgactcgtgaatatatgtttactcagaacaaaattgcaatttcacacgttttggttgaaaaataaaaagaaatcgaaacatctttgaaatactatgaa 8687  T
Q  103 atcttgcggatccattttttgtatttctatagatgtctctacaaacaatcaactcaaaa 161  Q
    || |||| ||||| || | ||||||||||||||||  ||| |||||||||  |||||||    
T  8688 attttgcagatcctttatatgtatttctatagatgcatctgcaaacaatctgctcaaaa 8746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0495; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 225 - 297
Target Start/End: Original strand, 8813 - 8887
Alignment:
Q  225 taattaattcaaccttagttgaaaaattataa--ttttatgtataaaatcatattttaatgtcctaaacatgcct 297  Q
    ||||||||||  |||||||||||||||| |||  |||| ||| |||| ||||||||||| || ||||||||||||    
T  8813 taattaattcgtccttagttgaaaaattctaactttttgtgtgtaaattcatattttaaagttctaaacatgcct 8887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 71; Significance: 4e-32; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 3 - 161
Target Start/End: Original strand, 10231868 - 10232026
Alignment:
Q  3 tttgacccgtgagtatacgcttactcagaacaaaattgcaatttcacacgttttagttgaaaaataataatcaatcgaaacatctttgaagagctacgaa 102  Q
    |||||| ||||| |||| | |||||||||||||||||||||||||||||||||| |||||||||||| ||  ||||||||||||||||||   ||| |||    
T  10231868 tttgactcgtgaatatatgtttactcagaacaaaattgcaatttcacacgttttggttgaaaaataaaaagaaatcgaaacatctttgaaatactatgaa 10231967  T
Q  103 atcttgcggatccattttttgtatttctatagatgtctctacaaacaatcaactcaaaa 161  Q
    || |||| ||||| || | ||||||||||||||||  ||| |||||||||  |||||||    
T  10231968 attttgcagatcctttatatgtatttctatagatgcatctgcaaacaatctgctcaaaa 10232026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 3 - 161
Target Start/End: Original strand, 28931576 - 28931735
Alignment:
Q  3 tttgacccgtgagtatacgcttactcagaacaaaattgcaatttcacacgttttagttgaaaaataataatcaatcgaaacatctttgaagagctacgaa 102  Q
    |||||||||| ||||||||||||| | |||||||||||||||||| ||| |||| ||| |||||| | ||| ||||||||  ||||||||  ||||||||    
T  28931576 tttgacccgtaagtatacgcttacacggaacaaaattgcaatttcgcacattttggttcaaaaattaaaataaatcgaaatgtctttgaaatgctacgaa 28931675  T
Q  103 atcttgcggatccattt-tttgtatttctatagatgtctctacaaacaatcaactcaaaa 161  Q
    |  |||| ||||| ||| | ||||||||||||||||||||| |||||||||| |||||||    
T  28931676 actttgcagatccttttgtatgtatttctatagatgtctctgcaaacaatcagctcaaaa 28931735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 225 - 303
Target Start/End: Original strand, 28931800 - 28931878
Alignment:
Q  225 taattaattcaaccttagttgaaaaattataattttatgtataaaatcatattttaatgtcctaaacatgcctcaaaaa 303  Q
    ||||||||||  ||||||||||||||||||   ||| ||| |||||||||||||||||||||||||||||||| |||||    
T  28931800 taattaattcgtccttagttgaaaaattattcctttttgtgtaaaatcatattttaatgtcctaaacatgcctgaaaaa 28931878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 11 - 67
Target Start/End: Original strand, 13838376 - 13838432
Alignment:
Q  11 gtgagtatacgcttactcagaacaaaattgcaatttcacacgttttagttgaaaaat 67  Q
    |||||||||||||||| | |||||||||| ||||||  |||||||||||||||||||    
T  13838376 gtgagtatacgcttacgcggaacaaaatttcaattttgcacgttttagttgaaaaat 13838432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 161
Target Start/End: Original strand, 28997305 - 28997455
Alignment:
Q  11 gtgagtatacgcttactcagaacaaaattgcaatttcacacgttttagttgaaaaataataatcaatcgaaacatctttgaagagctacgaaatcttgcg 110  Q
    |||||||||||||||| | |||||||||| ||||||  ||| |||| |||||||||| ||||| |||  ||||  ||| |||  |||| ||||  || |     
T  28997305 gtgagtatacgcttacgcggaacaaaatttcaattttgcacattttggttgaaaaatcataataaatttaaacgacttcgaaatgctatgaaactttaca 28997404  T
Q  111 gatccattttttgtatttctatagatgtctctacaaacaatcaactcaaaa 161  Q
     |||| |||| ||||||| ||||||||||||| |||| ||| | |||||||    
T  28997405 tatcctttttatgtatttttatagatgtctctgcaaataatgagctcaaaa 28997455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 161
Target Start/End: Complemental strand, 34948373 - 34948223
Alignment:
Q  11 gtgagtatacgcttactcagaacaaaattgcaatttcacacgttttagttgaaaaataataatcaatcgaaacatctttgaagagctacgaaatcttgcg 110  Q
    |||||||||||||||| | |||||||||| ||||||  ||||||| ||||||||||| | ||| |||  ||||  ||| ||   |||| ||||  || |     
T  34948373 gtgagtatacgcttacgcggaacaaaatttcaattttgcacgtttcagttgaaaaatcaaaataaatttaaacgacttcgatatgctatgaaactttaca 34948274  T
Q  111 gatccattttttgtatttctatagatgtctctacaaacaatcaactcaaaa 161  Q
    ||||| |||| || |||| ||||||||||||| |||| ||| |||||||||    
T  34948273 gatcctttttatgcatttttatagatgtctctgcaaataatgaactcaaaa 34948223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 67
Target Start/End: Original strand, 399195 - 399251
Alignment:
Q  11 gtgagtatacgcttactcagaacaaaattgcaatttcacacgttttagttgaaaaat 67  Q
    |||||||||||||||| | |||||||||| ||||||  ||||||| |||||||||||    
T  399195 gtgagtatacgcttacgcggaacaaaatttcaattttgcacgtttcagttgaaaaat 399251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 225 - 297
Target Start/End: Original strand, 10232091 - 10232165
Alignment:
Q  225 taattaattcaaccttagttgaaaaattataa--ttttatgtataaaatcatattttaatgtcctaaacatgcct 297  Q
    ||||||||||  |||||||||||||||| |||  |||| ||| |||| ||||||||||| || ||||||||||||    
T  10232091 taattaattcgtccttagttgaaaaattctaactttttgtgtgtaaattcatattttaaagttctaaacatgcct 10232165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 247 - 309
Target Start/End: Complemental strand, 23217425 - 23217363
Alignment:
Q  247 aaaattataattttatgtataaaatcatattttaatgtcctaaacatgcctcaaaaaattcaa 309  Q
    |||| ||||||||| ||| ||||  ||||||||||||||||||||||| ||  ||||||||||    
T  23217425 aaaaatataattttttgtgtaaagccatattttaatgtcctaaacatgtctggaaaaattcaa 23217363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 92
Target Start/End: Original strand, 11797063 - 11797151
Alignment:
Q  3 tttgacccgtgagtatacgcttactcagaacaaaattgcaatttcacacgttttagttgaaaaataataatcaatcgaaacatctttgaa 92  Q
    ||||| ||||||||||| ||||||||  |||||| |  ||||||| |||||||  |||||||||||| ||| |||||| |||| ||||||    
T  11797063 tttgatccgtgagtatatgcttactcgaaacaaa-taacaatttcgcacgtttcggttgaaaaataaaaataaatcgagacatatttgaa 11797151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 245 - 310
Target Start/End: Complemental strand, 34638882 - 34638815
Alignment:
Q  245 gaaaaattataattttatgtataaaatcatattttaat--gtcctaaacatgcctcaaaaaattcaac 310  Q
    |||||||| ||||||| ||| ||||| |||||||||||  ||||||||||||  | ||||||||||||    
T  34638882 gaaaaattctaattttttgtgtaaaaccatattttaatacgtcctaaacatgtttgaaaaaattcaac 34638815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 68; Significance: 2e-30; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 5 - 161
Target Start/End: Complemental strand, 30922527 - 30922363
Alignment:
Q  5 tgacccgtgagtatacgcttactcagaacaaaattgcaatttcacacgttttagttgaaaaataataatcaatcgaaacatctttgaagagctacgaaat 104  Q
    ||||||||||||||||||||| |||||||||||||||||||||||| ||||| |||||||||||| ||| ||| ||||||| ||||||    ||||||||    
T  30922527 tgacccgtgagtatacgcttagtcagaacaaaattgcaatttcacatgttttggttgaaaaataaaaataaatagaaacatatttgaaattgtacgaaat 30922428  T
Q  105 ctt--------gcggatccattttttgtatttctatagatgtctctacaaacaatcaactcaaaa 161  Q
     ||        ||  |||| |||| ||||||||||||||||||||| ||||||||||||||||||    
T  30922427 tttacagtttagcctatcctttttatgtatttctatagatgtctctgcaaacaatcaactcaaaa 30922363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 12 - 161
Target Start/End: Original strand, 8788394 - 8788544
Alignment:
Q  12 tgagtatacgcttactcagaacaaaattgcaatttcacacgttttagttgaaaaataat-aatcaatcgaaacatctttgaagagctacgaaatcttgcg 110  Q
    |||| ||||||||||||  ||||||||||| ||||  ||| |||| ||| ||||||||  ||  ||||||||||||||||||  | |||||||| ||||     
T  8788394 tgagaatacgcttactcgaaacaaaattgccattttgcacattttggtttaaaaataaagaaaaaatcgaaacatctttgaaatgttacgaaattttgca 8788493  T
Q  111 gatccattttttgtatttctatagatgtctctacaaacaatcaactcaaaa 161  Q
     |||| |||| |||||||||||||||| |||| ||| |||| | |||||||    
T  8788494 tatcctttttatgtatttctatagatgcctctgcaagcaattagctcaaaa 8788544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 3 - 161
Target Start/End: Complemental strand, 15959545 - 15959387
Alignment:
Q  3 tttgacccgtgagtatacgcttactcagaacaaaattgcaatttcacacgttttagttgaaaaataataatcaatcgaaacatctttgaagagctacgaa 102  Q
    ||||||| |||||||||||||||  | |||||||||| ||||||  |||||||| |||||||||| | ||| |||  ||||| |||||||  |||| |||    
T  15959545 tttgacctgtgagtatacgcttatgcggaacaaaatttcaattttgcacgttttggttgaaaaatcaaaataaatttaaacaactttgaaatgctatgaa 15959446  T
Q  103 atcttgcggatccattttttgtatttctatagatgtctctacaaacaatcaactcaaaa 161  Q
    |  ||   ||||| |||| ||||||| ||||||||||||| |||| ||| | |||||||    
T  15959445 actttaaagatcctttttatgtatttttatagatgtctctgcaaataatgagctcaaaa 15959387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 11 - 161
Target Start/End: Complemental strand, 31501310 - 31501159
Alignment:
Q  11 gtgagtatacgcttactcagaacaaaattgcaatttcacacgttttagttgaaaaataataatcaatcgaaacatctttgaagagctacgaaatcttgcg 110  Q
    |||||||||||||||| | |||||||||| ||||||  |||||||| |||||||||| | ||| |||  ||||| ||| |||  |||| ||||  || |     
T  31501310 gtgagtatacgcttacgcggaacaaaatttcaattttgcacgttttggttgaaaaatcaaaataaatttaaacaacttcgaaatgctatgaaactttaca 31501211  T
Q  111 gatccattttt-tgtatttctatagatgtctctacaaacaatcaactcaaaa 161  Q
    ||||| ||||| ||||||| ||||||||||||| |||| ||| | |||||||    
T  31501210 gatccttttttatgtatttttatagatgtctctgcaaataatgagctcaaaa 31501159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 11 - 161
Target Start/End: Complemental strand, 1775967 - 1775817
Alignment:
Q  11 gtgagtatacgcttactcagaacaaaattgcaatttcacacgttttagttgaaaaataataatcaatcgaaacatctttgaagagctacgaaatcttgcg 110  Q
    |||||||||||||||| | |||||||||| ||||||  ||||||| ||||||||||| | ||| |||  ||||  ||| |||  |||| ||||  || |     
T  1775967 gtgagtatacgcttacgcggaacaaaatttcaattttgcacgtttgagttgaaaaatcaaaataaatttaaacgacttcgaaatgctatgaaactttaca 1775868  T
Q  111 gatccattttttgtatttctatagatgtctctacaaacaatcaactcaaaa 161  Q
    ||||| |||| ||||||| ||||||||||||| |||| ||| | |||||||    
T  1775867 gatcctttttatgtatttttatagatgtctctgcaaataatgagctcaaaa 1775817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 11 - 161
Target Start/End: Original strand, 31680942 - 31681092
Alignment:
Q  11 gtgagtatacgcttactcagaacaaaattgcaatttcacacgttttagttgaaaaataataatcaatcgaaacatctttgaagagctacgaaatcttgcg 110  Q
    |||||||||||||||| | |||||||||| ||||||  |||||||| |||||||||| ||||| |||  ||||  ||| |||  |||| ||||  || |     
T  31680942 gtgagtatacgcttacgcggaacaaaatttcaattttgcacgttttggttgaaaaatcataataaatttaaacgacttcgaaatgctatgaaactttaca 31681041  T
Q  111 gatccattttttgtatttctatagatgtctctacaaacaatcaactcaaaa 161  Q
     |||| |||| ||||||| ||||||||||||| |||| ||| | |||||||    
T  31681042 tatcctttttatgtatttttatagatgtctctgcaaataatgagctcaaaa 31681092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 11 - 161
Target Start/End: Original strand, 33430896 - 33431046
Alignment:
Q  11 gtgagtatacgcttactcagaacaaaattgcaatttcacacgttttagttgaaaaataataatcaatcgaaacatctttgaagagctacgaaatcttgcg 110  Q
    |||||||||||||||| | |||||||||| ||||||  |||||||| |||||||||| ||||| |||  ||||  ||| |||  |||| ||||  || |     
T  33430896 gtgagtatacgcttacgcggaacaaaatttcaattttgcacgttttggttgaaaaatcataataaatttaaacgacttcgaaatgctatgaaactttaca 33430995  T
Q  111 gatccattttttgtatttctatagatgtctctacaaacaatcaactcaaaa 161  Q
     |||| |||| ||||||| ||||||||||||| |||| ||| | |||||||    
T  33430996 tatcctttttatgtatttttatagatgtctctgcaaataatgagctcaaaa 33431046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 3 - 67
Target Start/End: Complemental strand, 38269020 - 38268956
Alignment:
Q  3 tttgacccgtgagtatacgcttactcagaacaaaattgcaatttcacacgttttagttgaaaaat 67  Q
    ||||||| || ||||||||||||||| |||||||||| ||||||  |||||||| ||||||||||    
T  38269020 tttgacctgtaagtatacgcttactcggaacaaaatttcaattttgcacgttttggttgaaaaat 38268956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 73
Target Start/End: Original strand, 37255180 - 37255242
Alignment:
Q  11 gtgagtatacgcttactcagaacaaaattgcaatttcacacgttttagttgaaaaataataat 73  Q
    |||||||||||||||| | |||||||||| ||||||  |||||||| |||||||||| |||||    
T  37255180 gtgagtatacgcttacgcggaacaaaatttcaattttgcacgttttggttgaaaaatcataat 37255242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 67
Target Start/End: Complemental strand, 16333491 - 16333435
Alignment:
Q  11 gtgagtatacgcttactcagaacaaaattgcaatttcacacgttttagttgaaaaat 67  Q
    |||||||||||||||| | |||||||||| ||||||  ||||||| |||||||||||    
T  16333491 gtgagtatacgcttacgcggaacaaaatttcaattttgcacgtttcagttgaaaaat 16333435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 67
Target Start/End: Complemental strand, 26282907 - 26282851
Alignment:
Q  11 gtgagtatacgcttactcagaacaaaattgcaatttcacacgttttagttgaaaaat 67  Q
    |||||||||||||||| | |||||||||| ||||||  ||||||| |||||||||||    
T  26282907 gtgagtatacgcttacgcggaacaaaatttcaattttgcacgtttcagttgaaaaat 26282851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 293
Target Start/End: Original strand, 32279734 - 32279802
Alignment:
Q  225 taattaattcaaccttagttgaaaaattataattttatgtataaaatcatattttaatgtcctaaacat 293  Q
    ||||||||  |||||| |||||||||||||||||||||||  ||| |  |||||||| |||||||||||    
T  32279734 taattaatctaaccttggttgaaaaattataattttatgtggaaagttgtattttaacgtcctaaacat 32279802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 67
Target Start/End: Complemental strand, 36293210 - 36293154
Alignment:
Q  11 gtgagtatacgcttactcagaacaaaattgcaatttcacacgttttagttgaaaaat 67  Q
    |||||||||||||||| | |||||||||| ||||||  ||||||| |||||||||||    
T  36293210 gtgagtatacgcttacgcggaacaaaatttcaattttgcacgtttcagttgaaaaat 36293154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 237 - 293
Target Start/End: Original strand, 36716627 - 36716683
Alignment:
Q  237 ccttagttgaaaaattataattttatgtataaaatcatattttaatgtcctaaacat 293  Q
    |||||||||||||||| ||||||| ||| |||   ||||||||||||||||||||||    
T  36716627 ccttagttgaaaaattctaattttttgtgtaatgacatattttaatgtcctaaacat 36716683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 3 - 66
Target Start/End: Complemental strand, 18266206 - 18266143
Alignment:
Q  3 tttgacccgtgagtatacgcttactcagaacaaaattgcaatttcacacgttttagttgaaaaa 66  Q
    ||||||| |||| |||| ||||||||||| ||||||||||||||  |||||||| ||| |||||    
T  18266206 tttgacctgtgactatatgcttactcagagcaaaattgcaattttgcacgttttggttaaaaaa 18266143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 297
Target Start/End: Complemental strand, 34223797 - 34223724
Alignment:
Q  225 taattaattcaaccttagttgaaaaattataattttatgt-ataaaatcatattttaatgtcctaaacatgcct 297  Q
    ||||||||||  | ||||||||||| || ||||||||||| | ||||||||||||||| ||| ||| |||||||    
T  34223797 taattaattcgtctttagttgaaaatttctaattttatgtgaaaaaatcatattttaacgtcataatcatgcct 34223724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 147
Target Start/End: Complemental strand, 30297542 - 30297426
Alignment:
Q  31 aacaaaattgcaatttcacacgttttagttgaaaaataataatcaatcgaaacatctttgaagagctacgaaatcttgcggatccattttttgtatttct 130  Q
    ||||||||| ||||||  ||||||||||||| |||| || ||| ||| ||||| ||||  ||  |||| ||||  |||  ||||| |||| ||||||| |    
T  30297542 aacaaaatttcaattttgcacgttttagttggaaaacaaaaataaattgaaacttcttctaaacgctatgaaactttgtagatcctttttgtgtattttt 30297443  T
Q  131 atagatgtctctacaaa 147  Q
    ||||||| |||||||||    
T  30297442 atagatgcctctacaaa 30297426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 31271972 - 31272040
Alignment:
Q  1 attttgacccgtgagtatacgcttactcagaacaaaattgcaatttcacacgttttagttgaaaaataa 69  Q
    ||||||||  |||||||||| ||| ||  |||||||||| |||||| |||| |||| ||||||||||||    
T  31271972 attttgacttgtgagtatacacttgctaggaacaaaatttcaattttacacattttggttgaaaaataa 31272040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 4e-26; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 3 - 154
Target Start/End: Complemental strand, 29892154 - 29892006
Alignment:
Q  3 tttgacccgtgagtatacgcttactcagaacaaaattgcaatttcacacgttttagttgaaaaataataatcaatcgaaacatctttgaagagctacgaa 102  Q
    ||||||||||||||||||  ||||||| ||||||||||||||||| |||||||| |||||||||||| ||  |||  |||||||||||||  ||||| ||    
T  29892154 tttgacccgtgagtatacatttactcataacaaaattgcaatttcgcacgttttggttgaaaaataaaaa--aat-taaacatctttgaaatgctacaaa 29892058  T
Q  103 atcttgcggatccattttttgtatttctatagatgtctctacaaacaatcaa 154  Q
    || ||||  || | |||| ||||||||| ||||||||||| |||||||||||    
T  29892057 attttgcaaattctttttatgtatttctttagatgtctctgcaaacaatcaa 29892006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 3 - 161
Target Start/End: Original strand, 29351929 - 29352087
Alignment:
Q  3 tttgacccgtgagtatacgcttactcagaacaaaattgcaatttcacacgttttagttgaaaaataataatcaatcgaaacatctttgaagagctacgaa 102  Q
    |||||| | |||||||||| |||||  |||||||||||||||||| |||||||| |||||||||||| ||  |||  |||| ||||||||  ||||||||    
T  29351929 tttgactcatgagtatacgtttactaggaacaaaattgcaatttcgcacgttttggttgaaaaataaaaacaaattaaaacgtctttgaaatgctacgaa 29352028  T
Q  103 atcttgcggatccattttttgtatttctatagatgtctctacaaacaatcaactcaaaa 161  Q
    |  |||| |||   |||  ||||||| ||||||||||||| ||||||||||||||||||    
T  29352029 aatttgcagatttttttcatgtatttatatagatgtctctgcaaacaatcaactcaaaa 29352087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 3 - 161
Target Start/End: Complemental strand, 32540077 - 32539919
Alignment:
Q  3 tttgacccgtgagtatacgcttactcagaacaaaattgcaatttcacacgttttagttgaaaaataataatcaatcgaaacatctttgaagagctacgaa 102  Q
    |||||| | |||||||| |||||||  |||||||||| |||||| ||| ||||| |||||||||||| ||| ||| ||||| |||| |||  |||| |||    
T  32540077 tttgacacatgagtatatgcttactaggaacaaaatttcaattttacatgttttggttgaaaaataaaaataaattgaaacgtcttcgaaatgctatgaa 32539978  T
Q  103 atcttgcggatccattttttgtatttctatagatgtctctacaaacaatcaactcaaaa 161  Q
    |  |||  ||||| |||| ||||||| |||| |||| ||| |||||||| |||||||||    
T  32539977 actttggagatcctttttatgtatttttataaatgtttctgcaaacaataaactcaaaa 32539919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 3 - 151
Target Start/End: Original strand, 32750473 - 32750620
Alignment:
Q  3 tttgacccgtgagtatacgcttactcagaacaaaattgcaatttcacacgttttagttgaaaaataataatcaatcgaaacatctttgaagagctacgaa 102  Q
    ||||| || |||||||| | |||||| |||||||||||||||| ||  |||||| |||||||||||| ||| || |||||| ||||||||  ||||||||    
T  32750473 tttgatccatgagtatatgtttactc-gaacaaaattgcaattgcatgcgttttggttgaaaaataaaaataaaccgaaacgtctttgaaatgctacgaa 32750571  T
Q  103 atcttgcggatccattttttgtatttctatagatgtctctacaaacaat 151  Q
    |  ||||  |||| |||| || |||||||||||||| ||  ||||||||    
T  32750572 actttgcaaatcctttttatgcatttctatagatgtatccgcaaacaat 32750620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 11 - 88
Target Start/End: Complemental strand, 40401098 - 40401021
Alignment:
Q  11 gtgagtatacgcttactcagaacaaaattgcaatttcacacgttttagttgaaaaataataatcaatcgaaacatctt 88  Q
    |||||||||||||||||| ||| |||||||||||||   | ||||| |||||||||||| ||| ||||||||| ||||    
T  40401098 gtgagtatacgcttactcggaataaaattgcaattttgtatgttttggttgaaaaataaaaataaatcgaaacgtctt 40401021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 3 - 67
Target Start/End: Original strand, 17479997 - 17480061
Alignment:
Q  3 tttgacccgtgagtatacgcttactcagaacaaaattgcaatttcacacgttttagttgaaaaat 67  Q
    |||||| |||||||||| | |||||||||| ||||||||||||| |||| |||| ||||||||||    
T  17479997 tttgactcgtgagtatatgtttactcagaagaaaattgcaattttacacattttggttgaaaaat 17480061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 11 - 147
Target Start/End: Complemental strand, 34136393 - 34136257
Alignment:
Q  11 gtgagtatacgcttactcagaacaaaattgcaatttcacacgttttagttgaaaaataataatcaatcgaaacatctttgaagagctacgaaatcttgcg 110  Q
    |||||||||||||||| | |||||||||| ||||||  |||||||| |||||||||| ||||| |||  ||||  ||| |||  |||| ||||  || |     
T  34136393 gtgagtatacgcttacgcggaacaaaatttcaattttgcacgttttggttgaaaaatcataataaatttaaacgacttcgaaatgctatgaaagtttaca 34136294  T
Q  111 gatccattttttgtatttctatagatgtctctacaaa 147  Q
     |||| |||| | ||||| ||||||||||||||||||    
T  34136293 tatcctttttatatatttttatagatgtctctacaaa 34136257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 161
Target Start/End: Original strand, 4404583 - 4404733
Alignment:
Q  11 gtgagtatacgcttactcagaacaaaattgcaatttcacacgttttagttgaaaaataataatcaatcgaaacatctttgaagagctacgaaatcttgcg 110  Q
    |||||||||||||||| | |||||||||| ||||||  ||||| || |||||||||| ||||| |||  ||||  ||| |||  |||| |||| ||| |     
T  4404583 gtgagtatacgcttacgcggaacaaaatttcaattttgcacgtcttggttgaaaaatcataataaatttaaacgacttcgaaatgctatgaaaccttaca 4404682  T
Q  111 gatccattttttgtatttctatagatgtctctacaaacaatcaactcaaaa 161  Q
     |||| |||| ||||||| ||||||||||| | |||| ||| | |||||||    
T  4404683 tatcctttttatgtatttttatagatgtctttgcaaataatgagctcaaaa 4404733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 73
Target Start/End: Complemental strand, 16787617 - 16787555
Alignment:
Q  11 gtgagtatacgcttactcagaacaaaattgcaatttcacacgttttagttgaaaaataataat 73  Q
    |||||||||||||||| | |||||||||| ||||||  |||||||| |||||||||| |||||    
T  16787617 gtgagtatacgcttacgcggaacaaaatttcaattttgcacgttttggttgaaaaatcataat 16787555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 12 - 161
Target Start/End: Complemental strand, 15863211 - 15863063
Alignment:
Q  12 tgagtatacgcttactcagaacaaaattgcaatttcacacgttttagttgaaaaataataatcaatcgaaacatctttgaagagctacgaaatcttgcgg 111  Q
    |||||||||| |||| | |||||||||||  |||||||||||||| |||| ||||||| ||| ||| ||||| ||||| ||  | ||| |||  |||  |    
T  15863211 tgagtatacgtttacccggaacaaaattgttatttcacacgttttggttg-aaaataaaaataaattgaaacgtctttaaaatggtaccaaactttgtag 15863113  T
Q  112 atccattttttgtatttctatagatgtctctacaaacaatcaactcaaaa 161  Q
    |||  |||| ||||| |||  | |||||||| ||||||||||||||||||    
T  15863112 atcttttttatgtatatctgcatatgtctctgcaaacaatcaactcaaaa 15863063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 67
Target Start/End: Complemental strand, 3648384 - 3648328
Alignment:
Q  11 gtgagtatacgcttactcagaacaaaattgcaatttcacacgttttagttgaaaaat 67  Q
    |||||||||| ||||| | |||||||||| ||||||  |||||||||||||||||||    
T  3648384 gtgagtatacacttacgcggaacaaaatttcaattttgcacgttttagttgaaaaat 3648328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 67
Target Start/End: Complemental strand, 29727974 - 29727918
Alignment:
Q  11 gtgagtatacgcttactcagaacaaaattgcaatttcacacgttttagttgaaaaat 67  Q
    |||||||||||||||| | |||||||||| ||||||  ||||||| |||||||||||    
T  29727974 gtgagtatacgcttacgcggaacaaaatttcaattttgcacgtttcagttgaaaaat 29727918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 67
Target Start/End: Original strand, 39915092 - 39915148
Alignment:
Q  11 gtgagtatacgcttactcagaacaaaattgcaatttcacacgttttagttgaaaaat 67  Q
    |||||||||||||||| | |||||||||| ||||||  ||||||| |||||||||||    
T  39915092 gtgagtatacgcttacgcggaacaaaatttcaattttgcacgtttcagttgaaaaat 39915148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 67
Target Start/End: Original strand, 42231512 - 42231568
Alignment:
Q  11 gtgagtatacgcttactcagaacaaaattgcaatttcacacgttttagttgaaaaat 67  Q
    |||||||||||||||| | |||||||||| ||||||  |||||||| ||||||||||    
T  42231512 gtgagtatacgcttacgcggaacaaaatttcaattttgcacgttttggttgaaaaat 42231568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 304
Target Start/End: Complemental strand, 35402193 - 35402135
Alignment:
Q  246 aaaaattataattttatgtataaaatcatattttaatgtcctaaacatgcctcaaaaaa 304  Q
    |||||||||||||| ||||  ||| ||||||||||| ||||||||||||| | ||||||    
T  35402193 aaaaattataatttcatgttaaaagtcatattttaacgtcctaaacatgcattaaaaaa 35402135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 294
Target Start/End: Original strand, 32750699 - 32750767
Alignment:
Q  225 taattaattcaaccttagttgaaaaattataattttatgtataaaatcatattttaatgtcctaaacatg 294  Q
    ||||||||||  ||| ||||||||| |||||||||| ||| |||| ||||||||||| ||||||| ||||    
T  32750699 taattaattcgtcctcagttgaaaa-ttataattttttgtgtaaagtcatattttaacgtcctaagcatg 32750767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 67
Target Start/End: Complemental strand, 35852531 - 35852474
Alignment:
Q  10 cgtgagtatacgcttactcagaacaaaattgcaatttcacacgttttagttgaaaaat 67  Q
    |||||||||  ||||| || ||||||||||||||||||| | ||||| ||||||||||    
T  35852531 cgtgagtatttgcttattcggaacaaaattgcaatttcatatgttttggttgaaaaat 35852474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 67
Target Start/End: Complemental strand, 2728785 - 2728729
Alignment:
Q  11 gtgagtatacgcttactcagaacaaaattgcaatttcacacgttttagttgaaaaat 67  Q
    |||||||||| ||||| |||||||||||| ||||||   ||||||| ||||||||||    
T  2728785 gtgagtatacacttacgcagaacaaaatttcaattttgaacgttttggttgaaaaat 2728729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 67
Target Start/End: Original strand, 6481070 - 6481134
Alignment:
Q  3 tttgacccgtgagtatacgcttactcagaacaaaattgcaatttcacacgttttagttgaaaaat 67  Q
    |||||||| ||| |||| ||||||||| | |||||||||||||| ||| ||||| | ||||||||    
T  6481070 tttgacccttgattatatgcttactcatatcaaaattgcaattttacatgttttgggtgaaaaat 6481134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 3 - 161
Target Start/End: Original strand, 9415466 - 9415625
Alignment:
Q  3 tttgacccgtgagtatacgcttactcagaacaaaattgcaatttcacacgttttagttgaaaaataata-atcaatcgaaacatctttgaagagctacga 101  Q
    |||||| ||| |||||||||||||||  ||||||||||||||||| || ||||| |||||||||||| | |  |||||||| |||||| ||  ||||| |    
T  9415466 tttgactcgtaagtatacgcttactcgaaacaaaattgcaatttcgcatgttttggttgaaaaataaaataaaaatcgaaatatctttcaaatgctacaa 9415565  T
Q  102 aatcttgcggatccattttttgtatttctatagatgtctctacaaacaatcaactcaaaa 161  Q
    ||| |||| ||||| |||| | ||||||||||||||||||| ||| |||||| |||||||    
T  9415566 aattttgcagatcctttttatttatttctatagatgtctctgcaatcaatcagctcaaaa 9415625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 3 - 161
Target Start/End: Complemental strand, 26546899 - 26546746
Alignment:
Q  3 tttgacccgtgagtatacgcttactcagaacaaaattgcaatttcacacgttttag-ttgaaaaataataatcaatcgaaacatctttgaagagctacga 101  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||        ||| ||||||||||||||   ||| ||    
T  26546899 tttgacccgtgagtatacgcttactcagaacaaaattgcaatttcacacgttttggattgaaaaa-------aaattgaaacatctttgaaatactaaga 26546807  T
Q  102 aatcttgcggatccattttt-tgtatttctatagatgtctctacaaacaatcaactcaaaa 161  Q
    ||| ||||  |||  ||||| ||||||||||||||||||| | |||||||||| |||||||    
T  26546806 aattttgcaaatcattttttatgtatttctatagatgtctatgcaaacaatcacctcaaaa 26546746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 3 - 140
Target Start/End: Original strand, 31853794 - 31853931
Alignment:
Q  3 tttgacccgtgagtatacgcttactcagaacaaaattgcaatttcacacgttttagttgaaaaataataatcaatcgaaacatctttgaagagctacgaa 102  Q
    |||||||||||||||||| ||||||||| |||||||||||||||| || ||||| |||||||||| | ||| ||| ||||| ||||||||   |||||||    
T  31853794 tttgacccgtgagtatacacttactcagtacaaaattgcaatttcgcatgttttggttgaaaaattaaaataaatagaaacgtctttgaaatactacgaa 31853893  T
Q  103 atcttgcggatccattttttgtatttctatagatgtct 140  Q
    |  || | ||| | |||| |||||||||||||||||||    
T  31853894 aattttcagattctttttatgtatttctatagatgtct 31853931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 6 - 161
Target Start/End: Complemental strand, 4038301 - 4038146
Alignment:
Q  6 gacccgtgagtatacgcttactcagaacaaaattgcaatttcacacgttttagttgaaaaataataatcaatcgaaacatctttgaagagctacgaaatc 105  Q
    |||| ||||||||| | |||||| |||||||||||||||| |||| ||||| ||||| |||||| ||| |||  |||||||||| ||  | |||||||      
T  4038301 gacctgtgagtataggtttactcggaacaaaattgcaattccacaagttttggttgagaaataaaaataaattaaaacatctttaaaatgatacgaaact 4038202  T
Q  106 ttgcggatccattttttgtatttctatagatgtctctacaaacaatcaactcaaaa 161  Q
    || | ||| | |||| ||||||||||||||| ||||| |||||||| || ||||||    
T  4038201 ttacagattctttttatgtatttctatagatatctctccaaacaattaattcaaaa 4038146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 11 - 161
Target Start/End: Original strand, 35546527 - 35546677
Alignment:
Q  11 gtgagtatacgcttactcagaacaaaattgcaatttcacacgttttagttgaaaaataataatcaatcgaaacatctttgaagagctacgaaatcttgcg 110  Q
    |||||||||||||||| | |||||||||| ||||||  |||||||| |||||||||| ||||| |||  ||||  ||| |||  |||| ||||  || |     
T  35546527 gtgagtatacgcttacgcggaacaaaatttcaattttgcacgttttggttgaaaaatcataataaatttaaacgacttcgaaatgctatgaaactttaca 35546626  T
Q  111 gatccattttttgtatttctatagatgtctctacaaacaatcaactcaaaa 161  Q
     |||| |||| ||||||| ||||||||||||| |||| ||| |||||||||    
T  35546627 tatcctttttatgtatttttatagatgtctctgcaaataatgaactcaaaa 35546677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 11 - 161
Target Start/End: Complemental strand, 28876906 - 28876756
Alignment:
Q  11 gtgagtatacgcttactcagaacaaaattgcaatttcacacgttttagttgaaaaataataatcaatcgaaacatctttgaagagctacgaaatcttgcg 110  Q
    ||||||||| |||||| | |||||||||| ||||||  |||||||| |||||||||| | ||| |||  ||||  |||||||  |||| ||||  || |     
T  28876906 gtgagtataagcttacgcggaacaaaatttcaattttgcacgttttggttgaaaaatcaaaataaatttaaacgactttgaaatgctatgaaactttaca 28876807  T
Q  111 gatccattttttgtatttctatagatgtctctacaaacaatcaactcaaaa 161  Q
    ||||| |||| ||||||| ||||||||||||| |||| ||| | |||||||    
T  28876806 gatcctttttatgtatttttatagatgtctctgcaaataatgagctcaaaa 28876756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 73
Target Start/End: Complemental strand, 3292488 - 3292426
Alignment:
Q  11 gtgagtatacgcttactcagaacaaaattgcaatttcacacgttttagttgaaaaataataat 73  Q
    |||||||||||||||| | |||||||||| ||||||  |||||||| |||||||||| |||||    
T  3292488 gtgagtatacgcttacgcggaacaaaatttcaattttccacgttttggttgaaaaatcataat 3292426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 161
Target Start/End: Original strand, 6236085 - 6236235
Alignment:
Q  11 gtgagtatacgcttactcagaacaaaattgcaatttcacacgttttagttgaaaaataataatcaatcgaaacatctttgaagagctacgaaatcttgcg 110  Q
    |||||||||||||||| | |||||||||| ||||||  ||||||| ||||||||||| | ||| |||  ||||  ||| |||  |||| ||||  || |     
T  6236085 gtgagtatacgcttacgcggaacaaaatttcaattttgcacgtttcagttgaaaaatcaaaataaatttaaaccacttcgaaatgctatgaaactttaca 6236184  T
Q  111 gatccattttttgtatttctatagatgtctctacaaacaatcaactcaaaa 161  Q
    ||||| |||| ||||||| ||||||| ||||| |||| ||| | |||||||    
T  6236185 gatcctttttatgtatttttatagatatctctgcaaataatgagctcaaaa 6236235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 73
Target Start/End: Complemental strand, 6689827 - 6689765
Alignment:
Q  11 gtgagtatacgcttactcagaacaaaattgcaatttcacacgttttagttgaaaaataataat 73  Q
    |||||||||||||||| | |||||||||| ||||||  |||||||| |||||||||| |||||    
T  6689827 gtgagtatacgcttacgcggaacaaaatttcaattttccacgttttggttgaaaaatcataat 6689765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 73
Target Start/End: Complemental strand, 30216337 - 30216275
Alignment:
Q  11 gtgagtatacgcttactcagaacaaaattgcaatttcacacgttttagttgaaaaataataat 73  Q
    |||||||||||||||| | |||||||||| ||||||  |||||||| |||||||||| |||||    
T  30216337 gtgagtatacgcttacgcggaacaaaatttcaattttgcacgttttggttgaaaaatcataat 30216275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 161
Target Start/End: Original strand, 39994423 - 39994584
Alignment:
Q  3 tttgacccgtgagtatacgcttactcagaacaaaattgcaatttcacacgttttagttgaaaaataataatcaatcgaaacatctttgaagag-ctacga 101  Q
    |||||||||||||||| || |||||| | | ||||||||| |||  ||   ||| |||||||||||| ||| ||| ||||| ||||||||  | ||| ||    
T  39994423 tttgacccgtgagtatgcgtttactcgggaaaaaattgcagttttgcatactttggttgaaaaataaaaataaattgaaacttctttgaaatgtctatga 39994522  T
Q  102 aatcttgcggatccattttttgtat--ttctatagatgtctctacaaacaatcaactcaaaa 161  Q
    ||  |||  |||||||||||| |||  || ||||||||||||| |||||||||| |||||||    
T  39994523 aactttgaagatccattttttttatatttttatagatgtctctgcaaacaatcatctcaaaa 39994584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 73
Target Start/End: Complemental strand, 42333366 - 42333304
Alignment:
Q  11 gtgagtatacgcttactcagaacaaaattgcaatttcacacgttttagttgaaaaataataat 73  Q
    |||||||||||||||| | |||||||||| ||||||  |||||||| |||||||||| |||||    
T  42333366 gtgagtatacgcttacgcggaacaaaatttcaattttgcacgttttggttgaaaaatcataat 42333304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 73
Target Start/End: Complemental strand, 43143176 - 43143114
Alignment:
Q  11 gtgagtatacgcttactcagaacaaaattgcaatttcacacgttttagttgaaaaataataat 73  Q
    |||||||||||||||| | |||||||||| ||||||  |||||||| |||||||||| |||||    
T  43143176 gtgagtatacgcttacgcggaacaaaatttcaattttgcacgttttggttgaaaaatcataat 43143114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 48130543 - 48130609
Alignment:
Q  1 attttgacccgtgagtatacgcttactcagaacaaaattgcaatttcacacgttttagttgaaaaat 67  Q
    ||||||||  |||||||||||||||| | |||||||||| ||||||  |||||||| ||||||||||    
T  48130543 attttgacttgtgagtatacgcttacgcggaacaaaatttcaattttgcacgttttggttgaaaaat 48130609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 3 - 56
Target Start/End: Original strand, 9070847 - 9070900
Alignment:
Q  3 tttgacccgtgagtatacgcttactcagaacaaaattgcaatttcacacgtttt 56  Q
    |||||||||| |||||| ||||||||| ||||||||||||||||  ||||||||    
T  9070847 tttgacccgtcagtatatgcttactcataacaaaattgcaattttgcacgtttt 9070900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 67
Target Start/End: Original strand, 13012766 - 13012822
Alignment:
Q  11 gtgagtatacgcttactcagaacaaaattgcaatttcacacgttttagttgaaaaat 67  Q
    |||||||||||||||| | |||||||||| ||||||  ||||||| |||||||||||    
T  13012766 gtgagtatacgcttacgcggaacaaaatttcaattttgcacgtttcagttgaaaaat 13012822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 147
Target Start/End: Complemental strand, 17510819 - 17510683
Alignment:
Q  11 gtgagtatacgcttactcagaacaaaattgcaatttcacacgttttagttgaaaaataataatcaatcgaaacatctttgaagagctacgaaatcttgcg 110  Q
    |||||||||||||||| | |||||||||| ||||||  ||||||| |||| |||||| | ||| ||| |||||  ||| |||  |||| ||||  || |     
T  17510819 gtgagtatacgcttacgcggaacaaaatttcaattttgcacgtttcagttcaaaaatcaaaataaattgaaacgacttcgaaatgctatgaaactttaca 17510720  T
Q  111 gatccattttttgtatttctatagatgtctctacaaa 147  Q
    ||||| |||| | ||||| ||||||||||||| ||||    
T  17510719 gatcctttttatatatttttatagatgtctctgcaaa 17510683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 67
Target Start/End: Original strand, 20129891 - 20129947
Alignment:
Q  11 gtgagtatacgcttactcagaacaaaattgcaatttcacacgttttagttgaaaaat 67  Q
    |||||||||||||||| | |||||||||| ||||||  ||||||| |||||||||||    
T  20129891 gtgagtatacgcttacgcggaacaaaatttcaattttgcacgtttcagttgaaaaat 20129947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 67
Target Start/End: Complemental strand, 26438868 - 26438812
Alignment:
Q  11 gtgagtatacgcttactcagaacaaaattgcaatttcacacgttttagttgaaaaat 67  Q
    |||||||||||||||| | |||||||||| ||||||  ||||||| |||||||||||    
T  26438868 gtgagtatacgcttacgcggaacaaaatttcaattttgcacgtttcagttgaaaaat 26438812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 67
Target Start/End: Complemental strand, 34406873 - 34406817
Alignment:
Q  11 gtgagtatacgcttactcagaacaaaattgcaatttcacacgttttagttgaaaaat 67  Q
    |||||||||||||||| | |||||||||| ||||||  ||||||| |||||||||||    
T  34406873 gtgagtatacgcttacgcggaacaaaatttcaattttgcacgtttcagttgaaaaat 34406817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 67
Target Start/End: Original strand, 43356482 - 43356538
Alignment:
Q  11 gtgagtatacgcttactcagaacaaaattgcaatttcacacgttttagttgaaaaat 67  Q
    |||||||||||||||| | |||||||||| ||||||  ||||||| |||||||||||    
T  43356482 gtgagtatacgcttacgcggaacaaaatttcaattttgcacgtttcagttgaaaaat 43356538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 67
Target Start/End: Original strand, 47501351 - 47501407
Alignment:
Q  11 gtgagtatacgcttactcagaacaaaattgcaatttcacacgttttagttgaaaaat 67  Q
    |||||||||||||||| | |||||||||| ||||||  ||||||| |||||||||||    
T  47501351 gtgagtatacgcttacgcggaacaaaatttcaattttgcacgtttcagttgaaaaat 47501407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 11 - 66
Target Start/End: Original strand, 40529662 - 40529717
Alignment:
Q  11 gtgagtatacgcttactcagaacaaaattgcaatttcacacgttttagttgaaaaa 66  Q
    |||||||||||||||| | |||||||||| ||||||  ||||||| ||||||||||    
T  40529662 gtgagtatacgcttacgcggaacaaaatttcaattttgcacgtttcagttgaaaaa 40529717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 159
Target Start/End: Complemental strand, 20629120 - 20628970
Alignment:
Q  9 ccgtgagtatacgcttactcagaacaaaattgcaatttcacacgttttagttgaaaaataataatcaatcgaaacatctttgaagagctacgaaatcttg 108  Q
    ||||||||||| | |||||| ||| |||||||||||||   | ||||| |||||||||||| |||  || |||||||||| |||  |||| ||||  |||    
T  20629120 ccgtgagtatatgtttactcggaataaaattgcaattttgtatgttttggttgaaaaataaaaatagatagaaacatcttcgaaatgctatgaaactttg 20629021  T
Q  109 cggatccattttttgtatttctatagatgtctctacaaacaatcaactcaa 159  Q
    | ||||  |||  ||||||| |||| |||  ||| ||||||||||| ||||    
T  20629020 cagatctttttaatgtatttttatatatgattctccaaacaatcaaatcaa 20628970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 88
Target Start/End: Complemental strand, 29134203 - 29134145
Alignment:
Q  30 gaacaaaattgcaatttcacacgttttagttgaaaaataataatcaatcgaaacatctt 88  Q
    |||||||||| |||||| | ||||||| |||||||||||| ||| ||| ||||||||||    
T  29134203 gaacaaaatttcaattttaaacgttttggttgaaaaataaaaataaattgaaacatctt 29134145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 295
Target Start/End: Original strand, 31854015 - 31854085
Alignment:
Q  225 taattaattcaaccttagttgaaaaattataattttatgtataaaatcatattttaatgtcctaaacatgc 295  Q
    ||||||||||  |||||||||||||||| || |||| ||| |||| | ||||||||| || ||||||||||    
T  31854015 taattaattcgtccttagttgaaaaattctacttttttgtgtaaagtgatattttaacgttctaaacatgc 31854085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 67
Target Start/End: Complemental strand, 13391036 - 13390983
Alignment:
Q  14 agtatacgcttactcagaacaaaattgcaatttcacacgttttagttgaaaaat 67  Q
    ||||||||||||| | |||||||||| ||||||  |||||||| ||||||||||    
T  13391036 agtatacgcttacgcggaacaaaatttcaattttgcacgttttggttgaaaaat 13390983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 67
Target Start/End: Original strand, 25931285 - 25931341
Alignment:
Q  11 gtgagtatacgcttactcagaacaaaattgcaatttcacacgttttagttgaaaaat 67  Q
    ||||| |||||||||| | |||||||||| ||||||  ||||||| |||||||||||    
T  25931285 gtgagaatacgcttacgcggaacaaaatttcaattttgcacgtttcagttgaaaaat 25931341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 67
Target Start/End: Complemental strand, 36381938 - 36381882
Alignment:
Q  11 gtgagtatacgcttactcagaacaaaattgcaatttcacacgttttagttgaaaaat 67  Q
    |||||||||||||||| | ||| |||||| ||||||  ||||||| |||||||||||    
T  36381938 gtgagtatacgcttacgcggaataaaatttcaattttgcacgtttcagttgaaaaat 36381882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 67
Target Start/End: Original strand, 48989908 - 48989960
Alignment:
Q  15 gtatacgcttactcagaacaaaattgcaatttcacacgttttagttgaaaaat 67  Q
    |||||||||||| | |||||||||| ||||||  |||||||| ||||||||||    
T  48989908 gtatacgcttacgcggaacaaaatttcaatttggcacgttttggttgaaaaat 48989960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 59; Significance: 6e-25; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 3 - 161
Target Start/End: Original strand, 17744692 - 17744850
Alignment:
Q  3 tttgacccgtgagtatacgcttactcagaacaaaattgcaatttcacacgttttagttgaaaaataataatcaatcgaaacatctttgaagagctacgaa 102  Q
    |||||||||| |||||| |||||||| ||| | |||||||||||| |||||||| | | |||||||| ||| |||||||| |||||||||  |||| |||    
T  17744692 tttgacccgtcagtatatgcttactctgaatagaattgcaatttcgcacgttttggctaaaaaataaaaataaatcgaaaaatctttgaaatgctatgaa 17744791  T
Q  103 atcttgcggatccattttttgtatttctatagatgtctctacaaacaatcaactcaaaa 161  Q
    || || |  |||| |||| ||||||  ||||||||||||| |||||||||| |||||||    
T  17744792 atttttcaaatcctttttatgtattcttatagatgtctctgcaaacaatcagctcaaaa 17744850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 3 - 88
Target Start/End: Original strand, 42412421 - 42412505
Alignment:
Q  3 tttgacccgtgagtatacgcttactcagaacaaaattgcaatttcacacgttttagttgaaaaataataatcaatcgaaacatctt 88  Q
    ||||||| ||||||||||||| | || ||||||||||||||||| ||||||||| |||||||| ||| ||| |||| |||||||||    
T  42412421 tttgacctgtgagtatacgct-attcggaacaaaattgcaattttacacgttttggttgaaaactaaaaataaatcaaaacatctt 42412505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 28463502 - 28463568
Alignment:
Q  1 attttgacccgtgagtatacgcttactcagaacaaaattgcaatttcacacgttttagttgaaaaat 67  Q
    ||||||||| ||||||||||||||| || |||||||||| ||||||  || ||||| ||||||||||    
T  28463502 attttgacctgtgagtatacgcttattcggaacaaaatttcaattttgcatgttttggttgaaaaat 28463568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 73
Target Start/End: Original strand, 35908103 - 35908165
Alignment:
Q  11 gtgagtatacgcttactcagaacaaaattgcaatttcacacgttttagttgaaaaataataat 73  Q
    |||||||||||||||| | |||||||||| ||||||  |||||||| |||||||||| |||||    
T  35908103 gtgagtatacgcttacgcggaacaaaatttcaattttgcacgttttggttgaaaaatcataat 35908165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 225 - 290
Target Start/End: Original strand, 17744915 - 17744980
Alignment:
Q  225 taattaattcaaccttagttgaaaaattataattttatgtataaaatcatattttaatgtcctaaa 290  Q
    |||||||||||  ||||||||||||||| |||| || ||| |||| ||||||||||| ||||||||    
T  17744915 taattaattcattcttagttgaaaaattctaatattttgtgtaaagtcatattttaacgtcctaaa 17744980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 12 - 161
Target Start/End: Original strand, 23313571 - 23313720
Alignment:
Q  12 tgagtatacgcttactcagaacaaaattgcaatttcacacgttttagttgaaaaataataatcaatcgaaacatctttgaagagctacgaaatcttgcgg 111  Q
    ||||||||||||||| |||||||||||| ||||||   |||||| ||||||||||| | ||| |||  ||||  ||| ||   |||| ||||  || | |    
T  23313571 tgagtatacgcttacgcagaacaaaatttcaattttgaacgtttcagttgaaaaatcaaaataaatttaaacgacttcgatatgctatgaaactttacag 23313670  T
Q  112 atccattttttgtatttctatagatgtctctacaaacaatcaactcaaaa 161  Q
    |||| |||| ||||||| ||||||||||||| |||| ||| | |||||||    
T  23313671 atcctttttatgtatttttatagatgtctctgcaaataatgagctcaaaa 23313720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 67
Target Start/End: Original strand, 3829557 - 3829613
Alignment:
Q  11 gtgagtatacgcttactcagaacaaaattgcaatttcacacgttttagttgaaaaat 67  Q
    |||||||||||||||| | |||||||||| ||||||  |||||||| ||||||||||    
T  3829557 gtgagtatacgcttacgcggaacaaaatttcaattttgcacgttttggttgaaaaat 3829613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 67
Target Start/End: Complemental strand, 11957941 - 11957885
Alignment:
Q  11 gtgagtatacgcttactcagaacaaaattgcaatttcacacgttttagttgaaaaat 67  Q
    |||||||||||||||  | |||||||||||||||||  |||||||| ||||||||||    
T  11957941 gtgagtatacgcttatgcggaacaaaattgcaattttgcacgtttttgttgaaaaat 11957885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 131 - 161
Target Start/End: Complemental strand, 17457724 - 17457694
Alignment:
Q  131 atagatgtctctacaaacaatcaactcaaaa 161  Q
    |||||||||||||||||||||||||||||||    
T  17457724 atagatgtctctacaaacaatcaactcaaaa 17457694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 161
Target Start/End: Complemental strand, 42310531 - 42310381
Alignment:
Q  11 gtgagtatacgcttactcagaacaaaattgcaatttcacacgttttagttgaaaaataataatcaatcgaaacatctttgaagagctacgaaatcttgcg 110  Q
    |||||||||||||||| |  ||||||||| |||||| ||| |||| ||||||||||| | ||| |||  ||||  ||| |||  |||| ||||  || |     
T  42310531 gtgagtatacgcttacgcgaaacaaaatttcaattttacatgtttcagttgaaaaatcaaaataaatttaaacgacttcgaaatgctatgaaactttaca 42310432  T
Q  111 gatccattttttgtatttctatagatgtctctacaaacaatcaactcaaaa 161  Q
    ||||| |||| ||||||| ||||||| ||||| |||| ||| | |||||||    
T  42310431 gatcctttttatgtatttttatagatctctctgcaaataatgagctcaaaa 42310381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 56
Target Start/End: Complemental strand, 41971857 - 41971804
Alignment:
Q  3 tttgacccgtgagtatacgcttactcagaacaaaattgcaatttcacacgtttt 56  Q
    ||||||| |||||||||||||||| | |||||||||| ||||||  ||||||||    
T  41971857 tttgacctgtgagtatacgcttacgctgaacaaaatttcaattttgcacgtttt 41971804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 67
Target Start/End: Original strand, 7433997 - 7434053
Alignment:
Q  11 gtgagtatacgcttactcagaacaaaattgcaatttcacacgttttagttgaaaaat 67  Q
    |||||||||||||||| | |||||||||| ||||||  || |||| |||||||||||    
T  7433997 gtgagtatacgcttacgcggaacaaaatttcaattttgcatgtttcagttgaaaaat 7434053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 67
Target Start/End: Original strand, 17445869 - 17445925
Alignment:
Q  11 gtgagtatacgcttactcagaacaaaattgcaatttcacacgttttagttgaaaaat 67  Q
    |||||||||||||||| | |||||||||| ||||||  || ||||| ||||||||||    
T  17445869 gtgagtatacgcttacgcggaacaaaatttcaattttgcaagttttggttgaaaaat 17445925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 9e-21; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 3 - 161
Target Start/End: Complemental strand, 16094754 - 16094596
Alignment:
Q  3 tttgacccgtgagta-tacgcttactcagaacaaaattgcaatttcacacgttttagttgaaaaataataatcaatcgaaacatctttgaagagctacga 101  Q
    ||||||||||||||| |||| || |||| ||||||| ||||||||| ||| |||| |||||||||||| ||| ||| ||||| ||||||||  ||||| |    
T  16094754 tttgacccgtgagtaatacgattgctcataacaaaagtgcaatttcgcacattttggttgaaaaataaaaataaattgaaacttctttgaaatgctacaa 16094655  T
Q  102 aatcttgcggatccattttttgtatttctatagatgtctctacaaacaatcaactcaaaa 161  Q
    ||  |||| ||||| |||| |||| || ||||||||||||| |||||| ||| |||||||    
T  16094654 aactttgcagatcctttttatgta-ttatatagatgtctctgcaaacattcagctcaaaa 16094596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 11 - 161
Target Start/End: Original strand, 8257418 - 8257568
Alignment:
Q  11 gtgagtatacgcttactcagaacaaaattgcaatttcacacgttttagttgaaaaataataatcaatcgaaacatctttgaagagctacgaaatcttgcg 110  Q
    |||||||||||||||||  |||||||||| ||||||  |||||||| |||||||||||| ||| ||| ||||| ||||||||  |||| ||||  ||||     
T  8257418 gtgagtatacgcttactaggaacaaaatttcaattttgcacgttttggttgaaaaataaaaataaattgaaacgtctttgaaatgctatgaaactttgca 8257517  T
Q  111 gatccattttttgtatttctatagatgtctctacaaacaatcaactcaaaa 161  Q
     |||| |||| | ||||| ||||||||||| | |||||||| | |||||||    
T  8257518 tatcctttttatatatttttatagatgtctttgcaaacaatgagctcaaaa 8257568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 3 - 92
Target Start/End: Original strand, 35937789 - 35937882
Alignment:
Q  3 tttgacccgtgagtatac----gcttactcagaacaaaattgcaatttcacacgttttagttgaaaaataataatcaatcgaaacatctttgaa 92  Q
    ||||||||||||||||||    | |||||| |||  ||||||||||||||||| |||| |||||||||||| ||| ||| ||||||||||||||    
T  35937789 tttgacccgtgagtatacatttgattactcggaaagaaattgcaatttcacacattttggttgaaaaataaaaataaattgaaacatctttgaa 35937882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 33 - 140
Target Start/End: Complemental strand, 219178 - 219072
Alignment:
Q  33 caaaattgcaatttcacacgttttagttgaaaaataataatcaatcgaaacatctttgaagagctacgaaatcttgcggatccattttttgtatttctat 132  Q
    ||||||||||||||| |||||||| |||||||||||| ||   || ||||||| ||||||  ||||| || | |||| ||||| |||| |||||||||||    
T  219178 caaaattgcaatttcgcacgttttggttgaaaaataa-aaaatatggaaacatttttgaaatgctacaaatttttgcagatcctttttatgtatttctat 219080  T
Q  133 agatgtct 140  Q
    ||||||||    
T  219079 agatgtct 219072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 11 - 161
Target Start/End: Original strand, 45183555 - 45183705
Alignment:
Q  11 gtgagtatacgcttactcagaacaaaattgcaatttcacacgttttagttgaaaaataataatcaatcgaaacatctttgaagagctacgaaatcttgcg 110  Q
    |||||||||||||||| | |||||||||| ||||||  |||||||| |||||||||| ||||| |||  ||||  ||| |||  |||| ||||  || |     
T  45183555 gtgagtatacgcttacgcggaacaaaatttcaattttgcacgttttggttgaaaaatcataataaatttaaacgacttcgaaatgctatgaaactttaca 45183654  T
Q  111 gatccattttttgtatttctatagatgtctctacaaacaatcaactcaaaa 161  Q
     |||| |||| ||||||| ||||||||||||| |||| ||| | |||||||    
T  45183655 tatcctttttatgtatttttatagatgtctctgcaaataatgagctcaaaa 45183705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 10352832 - 10352900
Alignment:
Q  1 attttgacccgtgagtatacgcttactcagaacaaaattgcaatttcacacgttttagttgaaaaataa 69  Q
    |||||||| ||||||||||||||||||  || ||||||||||||||| ||| ||||  |||||||||||    
T  10352832 attttgacgcgtgagtatacgcttacttggagcaaaattgcaatttcgcacattttgattgaaaaataa 10352900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 161
Target Start/End: Complemental strand, 6269015 - 6268865
Alignment:
Q  11 gtgagtatacgcttactcagaacaaaattgcaatttcacacgttttagttgaaaaataataatcaatcgaaacatctttgaagagctacgaaatcttgcg 110  Q
    |||||||||||||||| | |||||||||| ||||||  ||||||| ||||||||||| | ||| |||  ||||  ||| |||  |||| ||||  || |     
T  6269015 gtgagtatacgcttacgcggaacaaaatttcaattttgcacgtttcagttgaaaaatcaaaataaatttaaacgacttcgaaatgctatgaaactttaca 6268916  T
Q  111 gatccattttttgtatttctatagatgtctctacaaacaatcaactcaaaa 161  Q
     |||| |||| ||||||| ||||||||||| |||||| ||| | |||||||    
T  6268915 aatcccttttatgtatttttatagatgtctttacaaataatgagctcaaaa 6268865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 73
Target Start/End: Complemental strand, 6503161 - 6503099
Alignment:
Q  11 gtgagtatacgcttactcagaacaaaattgcaatttcacacgttttagttgaaaaataataat 73  Q
    |||||||||||||||| | |||||||||| ||||||  |||||||| |||||||||| |||||    
T  6503161 gtgagtatacgcttacgcggaacaaaatttcaattttgcacgttttggttgaaaaatcataat 6503099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 73
Target Start/End: Complemental strand, 6930485 - 6930423
Alignment:
Q  11 gtgagtatacgcttactcagaacaaaattgcaatttcacacgttttagttgaaaaataataat 73  Q
    |||||||||||||||| | |||||||||| ||||||  |||||||| |||||||||| |||||    
T  6930485 gtgagtatacgcttacgcggaacaaaatttcaattttgcacgttttggttgaaaaatcataat 6930423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 161
Target Start/End: Complemental strand, 22968033 - 22967883
Alignment:
Q  11 gtgagtatacgcttactcagaacaaaattgcaatttcacacgttttagttgaaaaataataatcaatcgaaacatctttgaagagctacgaaatcttgcg 110  Q
    |||||||||||||||| | |||||||||| ||||||  ||||||| ||||||||||| | ||| |||  ||||  ||| |||  |||| ||||  || |     
T  22968033 gtgagtatacgcttacgcggaacaaaatttcaattttgcacgtttcagttgaaaaatcaaaataaatttaaacgacttcgaaatgctatgaaactttaca 22967934  T
Q  111 gatccattttttgtatttctatagatgtctctacaaacaatcaactcaaaa 161  Q
     |||| |||||||||||| ||||||||||| | |||| ||| | |||||||    
T  22967933 aatcccttttttgtatttttatagatgtctttgcaaataatgagctcaaaa 22967883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 161
Target Start/End: Complemental strand, 40081331 - 40081181
Alignment:
Q  11 gtgagtatacgcttactcagaacaaaattgcaatttcacacgttttagttgaaaaataataatcaatcgaaacatctttgaagagctacgaaatcttgcg 110  Q
    |||||||||||||||| | |||||||||| ||||||  ||||||| ||||||||||| | ||| |||  ||||  ||| |||  |||| ||||  || |     
T  40081331 gtgagtatacgcttacgcggaacaaaatttcaattttgcacgtttcagttgaaaaatcaaaataaatttaaacgacttcgaaatgctatgaaactttaca 40081232  T
Q  111 gatccattttttgtatttctatagatgtctctacaaacaatcaactcaaaa 161  Q
    ||||  |||| ||||||| ||||||||||||| |||| ||| | |||||||    
T  40081231 gatcttttttatgtatttttatagatgtctctgcaaataatgagctcaaaa 40081181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 11 - 151
Target Start/End: Complemental strand, 29564741 - 29564600
Alignment:
Q  11 gtgagtatacgcttactcagaacaaaattgcaatttcacacgttttag-ttgaaaaataataatcaatcgaaacatctttgaagagctacgaaatcttgc 109  Q
    |||||||||||||||||  ||||||||||  |||||  |||||||| | ||||||||||| ||| |||  ||| |||||||||   ||| ||||  ||||    
T  29564741 gtgagtatacgcttactaggaacaaaatttaaattttgcacgtttttggttgaaaaataaaaataaataaaaatatctttgaaatactatgaaactttgc 29564642  T
Q  110 ggatccattttttgtatttctatagatgtctctacaaacaat 151  Q
      |||| |||  ||||||| ||||||||||||| ||||||||    
T  29564641 taatccttttcatgtatttttatagatgtctctgcaaacaat 29564600  T

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Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 67
Target Start/End: Original strand, 5135863 - 5135919
Alignment:
Q  11 gtgagtatacgcttactcagaacaaaattgcaatttcacacgttttagttgaaaaat 67  Q
    |||||||||||||||| | |||||||||| ||||||  |||||||| ||||||||||    
T  5135863 gtgagtatacgcttacgcggaacaaaatttcaattttgcacgttttggttgaaaaat 5135919  T

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Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 67
Target Start/End: Original strand, 19390724 - 19390780
Alignment:
Q  11 gtgagtatacgcttactcagaacaaaattgcaatttcacacgttttagttgaaaaat 67  Q
    |||||||||||||||| | |||||||||| ||||||  ||||||| |||||||||||    
T  19390724 gtgagtatacgcttacgcggaacaaaatttcaattttgcacgtttcagttgaaaaat 19390780  T

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Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 117 - 161
Target Start/End: Complemental strand, 19814649 - 19814605
Alignment:
Q  117 ttttttgtatttctatagatgtctctacaaacaatcaactcaaaa 161  Q
    |||||||||||||||||||||||| | |||||||||| |||||||    
T  19814649 ttttttgtatttctatagatgtctttgcaaacaatcatctcaaaa 19814605  T

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Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 67
Target Start/End: Original strand, 39772368 - 39772424
Alignment:
Q  11 gtgagtatacgcttactcagaacaaaattgcaatttcacacgttttagttgaaaaat 67  Q
    |||||||||||||||| | |||||||||| ||||||  ||||||| |||||||||||    
T  39772368 gtgagtatacgcttacgcggaacaaaatttcaattttgcacgtttcagttgaaaaat 39772424  T

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Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 73
Target Start/End: Original strand, 33041529 - 33041587
Alignment:
Q  15 gtatacgcttactcagaacaaaattgcaatttcacacgttttagttgaaaaataataat 73  Q
    |||||||||||| | |||||||||| ||||||  |||||||| |||||||||| |||||    
T  33041529 gtatacgcttacgcggaacaaaatttcaattttgcacgttttggttgaaaaatcataat 33041587  T

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Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 92
Target Start/End: Complemental strand, 53311985 - 53311899
Alignment:
Q  3 tttgacccgtgagtatacgcttactcagaacaaaattgcaatttcacacgttttagttgaaaaataataatcaatcgaaacatctttgaa 92  Q
    |||||||||  |||||||| |||||| ||||||| |||||||||  ||| |||| |||||||||||| ||  |||| |||||||||||||    
T  53311985 tttgacccgcaagtatacgattactcggaacaaa-ttgcaatttttcacattttggttgaaaaataaaaa--aatcaaaacatctttgaa 53311899  T

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Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 306
Target Start/End: Complemental strand, 19814541 - 19814460
Alignment:
Q  225 taattaattcaaccttagttgaaaaattataattttatgtataaaatcatattttaatgtcctaaacatgcctcaaaaaatt 306  Q
    ||||||||||  |||||||||||||| |  | |||| ||| |||| ||||||||||| ||| ||||||| ||| ||||||||    
T  19814541 taattaattcgtccttagttgaaaaactcaatttttttgtgtaaagtcatattttaacgtcttaaacatacctgaaaaaatt 19814460  T

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Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 67
Target Start/End: Original strand, 27912571 - 27912635
Alignment:
Q  3 tttgacccgtgagtatacgcttactcagaacaaaattgcaatttcacacgttttagttgaaaaat 67  Q
    |||||||  |||||||| ||||||||||| ||||||| ||||||   ||||||| ||||||||||    
T  27912571 tttgacctatgagtatatgcttactcagatcaaaattacaattttgaacgttttggttgaaaaat 27912635  T

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Target: scaffold0069 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 67
Target Start/End: Original strand, 18136 - 18192
Alignment:
Q  11 gtgagtatacgcttactcagaacaaaattgcaatttcacacgttttagttgaaaaat 67  Q
    |||||||||||||||| | |||||||||| ||||||  ||||||| |||||||||||    
T  18136 gtgagtatacgcttacgcggaacaaaatttcaattttgcacgtttcagttgaaaaat 18192  T

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Target: scaffold0002 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 67
Target Start/End: Complemental strand, 480046 - 479990
Alignment:
Q  11 gtgagtatacgcttactcagaacaaaattgcaatttcacacgttttagttgaaaaat 67  Q
    |||||||||||||||| | |||||||||| ||||||  ||||||| |||||||||||    
T  480046 gtgagtatacgcttacgcggaacaaaatttcaattttgcacgtttcagttgaaaaat 479990  T

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Target: scaffold0831 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0831
Description:

Target: scaffold0831; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 69
Target Start/End: Original strand, 3444 - 3510
Alignment:
Q  3 tttgacccgtgagtatacgcttactcagaacaaaattgcaatttcacacgttttagttgaaaaataa 69  Q
    ||||| ||||||||||| | ||| || |||||||||||||||||  ||| |||| ||||||||||||    
T  3444 tttgatccgtgagtatatggttagtcggaacaaaattgcaattttgcacatttttgttgaaaaataa 3510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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