View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8111_low_16 (Length: 298)
Name: NF8111_low_16
Description: NF8111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8111_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 16 - 279
Target Start/End: Complemental strand, 31524196 - 31523933
Alignment:
| Q |
16 |
ataaattataatgtattcacaatgcagggagcaagacctttcaaatcattccttatcataaagttgccatatgacaagcatgcttctttgccaaatatat |
115 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31524196 |
ataaattataatgtattcacaatgcagggggcaagacctttcaaatcattccttatcataaagttgccatatgacaagcatgcttctttgccaaatatat |
31524097 |
T |
|
| Q |
116 |
caagggacgttagtttaacatgttaatataattggtgtccttaaaatagagcttatatatgaagttacatcagtgcatgtcaggttcatttatcctacaa |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31524096 |
caagggacgttagtttaacatgttaatataattggtgtccttaaaatagagcttatatatgaagttacatcagtgcatgtcaggttcatttatcctacaa |
31523997 |
T |
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| Q |
216 |
aaacatagaaggttcatttatttaatggtgggaagtatattatatcatcatgcttatgcactta |
279 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31523996 |
aaacgtagaaggttcatttatttaatggtgggaagtatattatatcatcatgcttatgcactta |
31523933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 16 - 279
Target Start/End: Complemental strand, 49194154 - 49193891
Alignment:
| Q |
16 |
ataaattataatgtattcacaatgcagggagcaagacctttcaaatcattccttatcataaagttgccatatgacaagcatgcttctttgccaaatatat |
115 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
49194154 |
ataaattataatgtattcacaatgcagggggcaagacctttcaaatcattccttatcataaagttgccatatggcaagcatgcttctttgccaaatatat |
49194055 |
T |
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| Q |
116 |
caagggacgttagtttaacatgttaatataattggtgtccttaaaatagagcttatatatgaagttacatcagtgcatgtcaggttcatttatcctacaa |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49194054 |
caagggacgttagtttaacatgttaatataattggtgtccttaaaatagagcttatatatgaagttacatcagtgcatgtcaggttcatttatcctacaa |
49193955 |
T |
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| Q |
216 |
aaacatagaaggttcatttatttaatggtgggaagtatattatatcatcatgcttatgcactta |
279 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49193954 |
aaacgtagaaggttcatttatttaatggtgggaagtatattatatcatcatgcttatgcactta |
49193891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 16 - 279
Target Start/End: Original strand, 33367304 - 33367567
Alignment:
| Q |
16 |
ataaattataatgtattcacaatgcagggagcaagacctttcaaatcattccttatcataaagttgccatatgacaagcatgcttctttgccaaatatat |
115 |
Q |
| |
|
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
33367304 |
ataaattataatgtattcacaatacagggggcaagacctttcaaatcattccttatcataaagttgccatatggcaagcatgcttctttgccaaatatat |
33367403 |
T |
|
| Q |
116 |
caagggacgttagtttaacatgttaatataattggtgtccttaaaatagagcttatatatgaagttacatcagtgcatgtcaggttcatttatcctacaa |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
33367404 |
caagggacgttagtttaacatgttaatataattggtgtccttaaaatagagcttatatatgaagttacattagtgcatgtcaggttcatttatcctacaa |
33367503 |
T |
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| Q |
216 |
aaacatagaaggttcatttatttaatggtgggaagtatattatatcatcatgcttatgcactta |
279 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
33367504 |
aaacatagaaggttcatttatttaatggtgggaagtatattatataatcatgcttatgcactta |
33367567 |
T |
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