View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8111_low_17 (Length: 281)
Name: NF8111_low_17
Description: NF8111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8111_low_17 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 253; Significance: 1e-141; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 5949169 - 5948909
Alignment:
| Q |
1 |
agagttgtagattaagatggataaattatctaagacctgatttgaaacgtggaagtttctctcatcaagaagtagcactcattgtagaactacacaacat |
100 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5949169 |
agagttgaagattaagatggataaattatctaagacctgatttgaaacgtggaagtttctctcatcaagaagtagcactcattgtagaactacacaacat |
5949070 |
T |
|
| Q |
101 |
tctaggcaataggtatattcattacattagctctatttcttctcaaaattcaaaagtttgtctggaatccctccgtgaatgtcgacttaacatattactc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5949069 |
tctaggcaataggtatattcattacattagctctctttcttctcaaaattcaaaagtttgtctggaatccctccgtgaatgtcgacttaacatattactc |
5948970 |
T |
|
| Q |
201 |
cctatattcattattattttttgcatcattttcaagtcatgctatttccctatacatctag |
261 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5948969 |
cctatattcattattattttttgcatcattttcaagtcatgctatttccctatacatctag |
5948909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 5984697 - 5984437
Alignment:
| Q |
1 |
agagttgtagattaagatggataaattatctaagacctgatttgaaacgtggaagtttctctcatcaagaagtagcactcattgtagaactacacaacat |
100 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5984697 |
agagttgcagattaagatggataaattatctaagacctgatttgaaacgtggaagtttctctcatcaagaagtagcactcattgtagaactacacaacat |
5984598 |
T |
|
| Q |
101 |
tctaggcaataggtatattcattacattagctctatttcttctcaaaattcaaaagtttgtctggaatccctccgtgaatgtcgacttaacatattactc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5984597 |
tctaggcaataggtatattcattacattagctctctttcttctcaaaattcaaaagtttgtctggaatccctccgtgaatgtcgacttaacatattactc |
5984498 |
T |
|
| Q |
201 |
cctatattcattattattttttgcatcattttcaagtcatgctatttccctatacatctag |
261 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5984497 |
cctatattcattattattttttgcatcattttcaagtcatgctatttccctatacatctag |
5984437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 5887305 - 5887165
Alignment:
| Q |
1 |
agagttgtagattaagatggataaattatctaagacctgatttgaaacgtggaagtttctctcatcaagaagtagcactcattgtagaactacacaacat |
100 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5887305 |
agagttgcagattaagatggataaattatctaagacctgatttgaaacgtggaagtttctctcatcaagaagtagcactcattgtagaactacacaacat |
5887206 |
T |
|
| Q |
101 |
tctaggcaataggtatattcattacattagctctatttctt |
141 |
Q |
| |
|
|||||||||||||||||| ||||||| ||||||| |||||| |
|
|
| T |
5887205 |
tctaggcaataggtatatccattacaatagctctttttctt |
5887165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 5960434 - 5960301
Alignment:
| Q |
1 |
agagttgtagattaagatggataaattatctaagacctgatttgaaacgtggaagtttctctcatcaagaagtagcactcattgtagaactacacaacat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |
|
|
| T |
5960434 |
agagttgtagattaagatggataaattatctaagacctgatttgaaacgtggaagtttctctcaacaagaagtagcactcattgtagaactccacaacat |
5960335 |
T |
|
| Q |
101 |
tctaggcaataggtatattcattacattagctct |
134 |
Q |
| |
|
| |||||||||||||||||||||||||||||||| |
|
|
| T |
5960334 |
tttaggcaataggtatattcattacattagctct |
5960301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 5921277 - 5921151
Alignment:
| Q |
1 |
agagttgtagattaagatggataaattatctaagacctgatttgaaacgtggaagtttctctcatcaagaagtagcactcattgtagaactacacaacat |
100 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| |||| ||| |
|
|
| T |
5921277 |
agagttgcagattaagatggataaattatctaagacctgatttgaaacgtggaagtttctctcatcaagaagctgcactcattctagaactccacagcat |
5921178 |
T |
|
| Q |
101 |
tctaggcaataggtatattcattacat |
127 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
5921177 |
tctaggcaataggtatattcattacat |
5921151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 3 - 134
Target Start/End: Complemental strand, 5843164 - 5843033
Alignment:
| Q |
3 |
agttgtagattaagatggataaattatctaagacctgatttgaaacgtggaagtttctctcatcaagaagtagcactcattgtagaactacacaacattc |
102 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || ||||||||||| ||||| |||||||||||| ||||| |
|
|
| T |
5843164 |
agttgtagattaagatggataaattatctaagacctgatttaaaacgtggaagtttctcttatgaagaagtagcaatcattatagaactacacagcattc |
5843065 |
T |
|
| Q |
103 |
taggcaataggtatattcattacattagctct |
134 |
Q |
| |
|
|||||||||||||||| ||||||| ||||||| |
|
|
| T |
5843064 |
taggcaataggtatatccattacaatagctct |
5843033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 3 - 126
Target Start/End: Complemental strand, 5849906 - 5849783
Alignment:
| Q |
3 |
agttgtagattaagatggataaattatctaagacctgatttgaaacgtggaagtttctctcatcaagaagtagcactcattgtagaactacacaacattc |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||| |||||||||||| ||||| |
|
|
| T |
5849906 |
agttgtagattaagatggataaattatctaagacctgatttgaaacgtggaagtttctcttatgaagaagtagcaatcattatagaactacacagcattc |
5849807 |
T |
|
| Q |
103 |
taggcaataggtatattcattaca |
126 |
Q |
| |
|
|||||||||||||||| ||||||| |
|
|
| T |
5849806 |
taggcaataggtatatccattaca |
5849783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 41351266 - 41351226
Alignment:
| Q |
1 |
agagttgtagattaagatggataaattatctaagacctgat |
41 |
Q |
| |
|
|||||||| |||||||||||||||||||| | ||||||||| |
|
|
| T |
41351266 |
agagttgtcgattaagatggataaattatttgagacctgat |
41351226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 15 - 118
Target Start/End: Complemental strand, 42789033 - 42788930
Alignment:
| Q |
15 |
agatggataaattatctaagacctgatttgaaacgtggaagtttctctcatcaagaagtagcactcattgtagaactacacaacattctaggcaataggt |
114 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||| |||| ||||||| || || ||| | ||||| || | ||||||||| || |||| |
|
|
| T |
42789033 |
agatggataaattatttaagacctgatttgaaacgtggaagtttttctccacaagaagctgctcttattattgaacttcataccattctaggaaacaggt |
42788934 |
T |
|
| Q |
115 |
atat |
118 |
Q |
| |
|
|||| |
|
|
| T |
42788933 |
atat |
42788930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 45676125 - 45676080
Alignment:
| Q |
1 |
agagttgtagattaagatggataaattatctaagacctgatttgaa |
46 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| ||||||||||| |
|
|
| T |
45676125 |
agagttgtagattgagatggataaattatctaaggcctgatttgaa |
45676080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 34626745 - 34626700
Alignment:
| Q |
1 |
agagttgtagattaagatggataaattatctaagacctgatttgaa |
46 |
Q |
| |
|
||||||||||||| |||||||| || ||||| |||||||||||||| |
|
|
| T |
34626745 |
agagttgtagattgagatggatcaactatctgagacctgatttgaa |
34626700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 44674049 - 44674089
Alignment:
| Q |
1 |
agagttgtagattaagatggataaattatctaagacctgat |
41 |
Q |
| |
|
||||||| ||||| |||||||||||||| |||||||||||| |
|
|
| T |
44674049 |
agagttgcagattgagatggataaattacctaagacctgat |
44674089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University