View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8111_low_20 (Length: 262)
Name: NF8111_low_20
Description: NF8111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8111_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 15 - 247
Target Start/End: Complemental strand, 36640896 - 36640666
Alignment:
| Q |
15 |
atgaactcatttgcagatgctttagcaaaacgtggcgtgaatatggaggggcagagaatttggcggcctgaggattgaagtgtgtgaggcttgctagttt |
114 |
Q |
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| T |
36640896 |
atgaactcatttgcagatgctttagcaaaacgtggcgtgaatatggaggggcagagaatttggcggcctgaggattgaagtgtgtg--gcttgctagttt |
36640799 |
T |
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| Q |
115 |
gcaattcaaaatttattttgcagaaatagagaaatctatttgtatatctgtcagtttgctgctgtcctgactgattcggatgctgttgtggtggggcgtg |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36640798 |
gcaattcaaaatttattttgcagaaatagagaaatctatttgtatatctgtcagtttgctgctgtcctgactgattcggatgctgttgtggtggggcgtg |
36640699 |
T |
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| Q |
215 |
tttagctgataggtgggattgtgttgctgatgt |
247 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
36640698 |
tttagctgataggtgggattgtgttgctgatgt |
36640666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 15 - 243
Target Start/End: Complemental strand, 36633530 - 36633302
Alignment:
| Q |
15 |
atgaactcatttgcagatgctttagcaaaacgtggcgtgaatatggaggggcagagaatttggcggcctgaggattgaagtgtgtgaggcttgctagttt |
114 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||| |
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| T |
36633530 |
atgaactcatttgcagatgctttagcaaaaagtggcgtgaatatggaggggcagagaatttggtggcctatggattaaagtgtgtgaggcttgctagttt |
36633431 |
T |
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| Q |
115 |
gcaattcaaaatttattttgcagaaatagagaaatctatttgtatatctgtcagtttgctgctgtcctgactgattcggatgctgttgtggtggggcgtg |
214 |
Q |
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| T |
36633430 |
gcaattcaaaatttattttacagaaatagagaaatctatttgtatatctgtctgtttgctgctgtcctgactgattcggatgctgttgtggtggggtgtg |
36633331 |
T |
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| Q |
215 |
tttagctgataggtgggattgtgttgctg |
243 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
36633330 |
tttagctgataggtgggattgtgttgctg |
36633302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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