View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8111_low_23 (Length: 250)
Name: NF8111_low_23
Description: NF8111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8111_low_23 |
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Alignment Details
Target: chr8 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 172
Target Start/End: Complemental strand, 25589460 - 25589289
Alignment:
| Q |
1 |
cttcagaaagctctcaataatgtttattttggtcagaataaagtttgggcgaatgttgcacgctttgataggtttggtgaggttaaaaaagaactgttga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25589460 |
cttcagaaagctctcaataatgtttattttggtcagaataaagtttgggcgaatgttgcacgctttgataggtttggtgaggttaaaaaagaactgttga |
25589361 |
T |
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| Q |
101 |
atggattggaggatggtaagaatacggctgcagtaggaggaaaaaataagttgaaaattaatgccgatgttg |
172 |
Q |
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| T |
25589360 |
atggattggaggatggtaagaatacggctgcagtaggaggaaaaaataagttgaaaattaatgccgatgttg |
25589289 |
T |
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Target: chr5 (Bit Score: 168; Significance: 4e-90; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 1 - 172
Target Start/End: Complemental strand, 26374675 - 26374504
Alignment:
| Q |
1 |
cttcagaaagctctcaataatgtttattttggtcagaataaagtttgggcgaatgttgcacgctttgataggtttggtgaggttaaaaaagaactgttga |
100 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26374675 |
cttcagaaagctcttaataatgtttattttggtcagaataaagtttgggcgaatgttgcacgctttgataggtttggtgaggttaaaaaagaactgttga |
26374576 |
T |
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| Q |
101 |
atggattggaggatggtaagaatacggctgcagtaggaggaaaaaataagttgaaaattaatgccgatgttg |
172 |
Q |
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| T |
26374575 |
atggattggaggatggtaagaatacggctgcagtaggaggaaaaaataagttgaaaattaatgccgatgttg |
26374504 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 4 - 169
Target Start/End: Complemental strand, 17919183 - 17919018
Alignment:
| Q |
4 |
cagaaagctctcaataatgtttattttggtcagaataaagtttgggcgaatgttgcacgctttgataggtttggtgaggttaaaaaagaactgttgaatg |
103 |
Q |
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| T |
17919183 |
cagaaagctcttaataatatttattttggtcagaataaagtttgggcgaatgttgcacgctttgataagtttggtgaggttaaaacagaactgttgaatg |
17919084 |
T |
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| Q |
104 |
gattggaggatggtaagaatacggctgcagtaggaggaaaaaataagttgaaaattaatgccgatg |
169 |
Q |
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| T |
17919083 |
ggttggaggatggtaagaaaccggctgcagtaggaggaaaaaataagtcgaaaattaacgccgatg |
17919018 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 115; Significance: 2e-58; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 7 - 169
Target Start/End: Original strand, 14126903 - 14127065
Alignment:
| Q |
7 |
aaagctctcaataatgtttattttggtcagaataaagtttgggcgaatgttgcacgctttgataggtttggtgaggttaaaaaagaactgttgaatggat |
106 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||| | ||||||||| |||||||||||||||||||||||||||||| || ||||||||| | |
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| T |
14126903 |
aaagctcttaataatgtttattttggtcagaataaagtttggacaaatgttgcatgctttgataggtttggtgaggttaaaaaagtaccgttgaatgggt |
14127002 |
T |
|
| Q |
107 |
tggaggatggtaagaatacggctgcagtaggaggaaaaaataagttgaaaattaatgccgatg |
169 |
Q |
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| T |
14127003 |
tggaggatggtaagaaatcggctgcagtaggaggaaaaaataagtcgaaaaataatgctgatg |
14127065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 4 - 157
Target Start/End: Complemental strand, 12927660 - 12927507
Alignment:
| Q |
4 |
cagaaagctctcaataatgtttattttggtcagaataaagtttgggcgaatgttgcacgctttgataggtttggtgaggttaaaaaagaactgttgaatg |
103 |
Q |
| |
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||||||||||| |||||||||| || || ||| ||| ||| ||||||||| | ||||| ||||| |||||||| ||||||| || || |||||||| | |
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| T |
12927660 |
cagaaagctcttaataatgtttcattaggccagtatagagtgtgggcgaatatcgcacgttttgacaggtttggggaggttaggaaggagctgttgaagg |
12927561 |
T |
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| Q |
104 |
gattggaggatggtaagaatacggctgcagtaggaggaaaaaataagttgaaaa |
157 |
Q |
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|||||||||||||| || |||| | ||| |||||||||||||||| ||||| |
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| T |
12927560 |
agttggaggatggtaaaaaatcggcagaagtgggaggaaaaaataagtcgaaaa |
12927507 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 27 - 98
Target Start/End: Complemental strand, 8758630 - 8758559
Alignment:
| Q |
27 |
ttttggtcagaataaagtttgggcgaatgttgcacgctttgataggtttggtgaggttaaaaaagaactgtt |
98 |
Q |
| |
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|||||||| ||||| ||| ||||| |||||||| || |||||||||||||| || |||||||||||| |||| |
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| T |
8758630 |
ttttggtccgaatagagtgtgggcaaatgttgcgcgttttgataggtttggagaagttaaaaaagaattgtt |
8758559 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 4 - 104
Target Start/End: Original strand, 24080929 - 24081029
Alignment:
| Q |
4 |
cagaaagctctcaataatgtttattttggtcagaataaagtttgggcgaatgttgcacgctttgataggtttggtgaggttaaaaaagaactgttgaatg |
103 |
Q |
| |
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||||||| ||| |||||||| | |||||||||||||||||| |||| ||||||||| ||||||||||||||||||||||||| |||||| |||| |||| |
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| T |
24080929 |
cagaaagttctgaataatgtcttttttggtcagaataaagtgtgggaaaatgttgcatgctttgataggtttggtgaggttaagaaagaattgttcaatg |
24081028 |
T |
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| Q |
104 |
g |
104 |
Q |
| |
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| |
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| T |
24081029 |
g |
24081029 |
T |
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