View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8111_low_25 (Length: 239)

Name: NF8111_low_25
Description: NF8111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8111_low_25
NF8111_low_25
[»] chr5 (23 HSPs)
chr5 (17-138)||(15675419-15675540)
chr5 (17-139)||(35469009-35469131)
chr5 (17-138)||(14832699-14832820)
chr5 (17-96)||(15504055-15504134)
chr5 (17-139)||(34444072-34444195)
chr5 (24-138)||(7161972-7162086)
chr5 (17-138)||(2476471-2476592)
chr5 (29-138)||(1672375-1672484)
chr5 (17-96)||(30249071-30249150)
chr5 (24-96)||(32953598-32953670)
chr5 (17-96)||(6900873-6900952)
chr5 (23-138)||(13942641-13942755)
chr5 (24-138)||(16567904-16568018)
chr5 (23-96)||(36234485-36234558)
chr5 (23-138)||(12267271-12267385)
chr5 (24-139)||(43228530-43228645)
chr5 (50-139)||(33007025-33007114)
chr5 (50-139)||(34846485-34846574)
chr5 (43-139)||(21069153-21069249)
chr5 (27-96)||(767414-767483)
chr5 (48-138)||(37552051-37552141)
chr5 (48-138)||(37654881-37654971)
chr5 (48-96)||(37607573-37607621)
[»] chr4 (23 HSPs)
chr4 (17-138)||(4728665-4728786)
chr4 (17-138)||(4552292-4552413)
chr4 (17-137)||(10715763-10715883)
chr4 (17-137)||(10929533-10929653)
chr4 (17-139)||(2017324-2017446)
chr4 (23-139)||(52373867-52373983)
chr4 (17-138)||(32005990-32006111)
chr4 (17-138)||(40969331-40969452)
chr4 (17-138)||(46645710-46645831)
chr4 (27-96)||(50099987-50100056)
chr4 (21-96)||(2521828-2521903)
chr4 (50-137)||(10058656-10058743)
chr4 (29-96)||(43003114-43003181)
chr4 (19-138)||(2576281-2576400)
chr4 (43-138)||(25237721-25237816)
chr4 (24-138)||(9003669-9003783)
chr4 (23-91)||(50383987-50384055)
chr4 (18-96)||(1585777-1585855)
chr4 (23-96)||(49745168-49745242)
chr4 (50-135)||(31364254-31364339)
chr4 (48-135)||(32828281-32828368)
chr4 (48-96)||(41972372-41972420)
chr4 (23-75)||(43003156-43003208)
[»] chr2 (21 HSPs)
chr2 (17-139)||(6799772-6799894)
chr2 (149-216)||(18708417-18708484)
chr2 (17-140)||(41114755-41114878)
chr2 (17-139)||(29257473-29257595)
chr2 (23-139)||(17148909-17149025)
chr2 (17-140)||(303977-304100)
chr2 (22-139)||(41010624-41010741)
chr2 (17-140)||(12000663-12000787)
chr2 (17-96)||(18299072-18299151)
chr2 (22-134)||(25563084-25563196)
chr2 (21-138)||(13203878-13203995)
chr2 (17-96)||(15651347-15651427)
chr2 (48-138)||(2475944-2476034)
chr2 (43-140)||(17249463-17249560)
chr2 (50-138)||(22572609-22572697)
chr2 (17-54)||(17249458-17249495)
chr2 (43-96)||(45444383-45444436)
chr2 (104-140)||(1542858-1542894)
chr2 (62-135)||(16220919-16220992)
chr2 (23-75)||(25563064-25563116)
chr2 (23-75)||(41010604-41010656)
[»] chr8 (13 HSPs)
chr8 (17-137)||(36406378-36406498)
chr8 (17-96)||(3383949-3384028)
chr8 (22-96)||(34282790-34282864)
chr8 (17-138)||(28928166-28928287)
chr8 (27-135)||(27321753-27321861)
chr8 (36-135)||(35384256-35384355)
chr8 (23-75)||(34282832-34282884)
chr8 (22-126)||(13243242-13243346)
chr8 (47-138)||(24965148-24965239)
chr8 (48-138)||(38214863-38214953)
chr8 (17-58)||(39431597-39431638)
chr8 (109-138)||(8968579-8968608)
chr8 (110-138)||(21958802-21958830)
[»] chr6 (17 HSPs)
chr6 (17-139)||(2941329-2941451)
chr6 (17-96)||(9696162-9696241)
chr6 (17-96)||(23663689-23663768)
chr6 (17-123)||(34248916-34249022)
chr6 (24-137)||(10397698-10397811)
chr6 (17-138)||(15122150-15122271)
chr6 (28-86)||(2836107-2836165)
chr6 (17-136)||(15529053-15529172)
chr6 (24-96)||(28614334-28614406)
chr6 (17-138)||(31188200-31188321)
chr6 (29-96)||(14938852-14938919)
chr6 (48-138)||(339476-339566)
chr6 (19-96)||(9046845-9046922)
chr6 (32-137)||(2960794-2960899)
chr6 (17-89)||(31200094-31200166)
chr6 (23-135)||(34188911-34189023)
chr6 (50-136)||(1780933-1781019)
[»] chr1 (17 HSPs)
chr1 (17-139)||(44305518-44305640)
chr1 (17-138)||(14727436-14727557)
chr1 (17-138)||(25007570-25007691)
chr1 (17-135)||(37153881-37153999)
chr1 (17-94)||(4641969-4642046)
chr1 (17-96)||(25011467-25011546)
chr1 (17-138)||(27583905-27584022)
chr1 (17-139)||(1428306-1428428)
chr1 (24-138)||(27460792-27460905)
chr1 (24-138)||(4774085-4774199)
chr1 (43-137)||(33468860-33468954)
chr1 (50-138)||(31844529-31844617)
chr1 (50-138)||(6331804-6331892)
chr1 (17-58)||(44238809-44238850)
chr1 (48-141)||(24646185-24646278)
chr1 (43-138)||(34459253-34459348)
chr1 (22-96)||(48940335-48940409)
[»] chr3 (12 HSPs)
chr3 (17-137)||(14461177-14461297)
chr3 (17-138)||(28311389-28311510)
chr3 (17-96)||(7501068-7501147)
chr3 (23-139)||(41218242-41218358)
chr3 (17-135)||(33178983-33179101)
chr3 (17-96)||(44047696-44047775)
chr3 (17-138)||(12909940-12910059)
chr3 (17-95)||(43700124-43700202)
chr3 (50-138)||(37516766-37516854)
chr3 (17-135)||(53652010-53652128)
chr3 (50-137)||(26370931-26371018)
chr3 (48-96)||(53987974-53988022)
[»] scaffold0618 (1 HSPs)
scaffold0618 (17-139)||(1802-1924)
[»] scaffold0075 (2 HSPs)
scaffold0075 (17-139)||(11630-11752)
scaffold0075 (18-133)||(7018-7132)
[»] chr7 (19 HSPs)
chr7 (24-139)||(22206573-22206688)
chr7 (24-139)||(22228051-22228166)
chr7 (17-96)||(23704399-23704478)
chr7 (17-140)||(35300314-35300437)
chr7 (23-96)||(4843432-4843505)
chr7 (27-122)||(5991324-5991419)
chr7 (22-138)||(28693891-28694007)
chr7 (22-137)||(21932631-21932746)
chr7 (31-96)||(7873150-7873215)
chr7 (43-138)||(814861-814956)
chr7 (43-138)||(3012454-3012549)
chr7 (23-96)||(19377523-19377597)
chr7 (52-139)||(26722846-26722933)
chr7 (47-96)||(38128911-38128960)
chr7 (17-54)||(38128932-38128969)
chr7 (23-96)||(38991107-38991180)
chr7 (17-45)||(3012449-3012477)
chr7 (23-75)||(21932714-21932766)
chr7 (48-96)||(30852447-30852495)
[»] scaffold0638 (1 HSPs)
scaffold0638 (50-139)||(4217-4306)
[»] scaffold0015 (1 HSPs)
scaffold0015 (110-138)||(214018-214046)


Alignment Details
Target: chr5 (Bit Score: 77; Significance: 7e-36; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 17 - 138
Target Start/End: Original strand, 15675419 - 15675540
Alignment:
Q  17 agatatatccgcaggaaatgtgaaattatctgcaggaaatgtaacattatttgcaggaaggaagtaacgttttgcgataannnnnnngccctggctctat 116  Q
    ||||||||||| ||||||||||||||||||| |||||||||| | |||||| ||||||||||||||||||||||||||||       |||| ||||||||    
T  15675419 agatatatccgaaggaaatgtgaaattatctacaggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaattttttgcccaggctctat 15675518  T
Q  117 aaaattcctagctccgccactg 138  Q
    ||||||||||||||||||||||    
T  15675519 aaaattcctagctccgccactg 15675540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 17 - 139
Target Start/End: Original strand, 35469009 - 35469131
Alignment:
Q  17 agatatatccgcaggaaatgtgaaattatctgcaggaaatgtaacattatttgcaggaaggaagtaacgttttgcgataannnnnnngccctggctctat 116  Q
    ||||||||||| || ||||||||||||||||||||||||||| | |||||| |||||||||||||||| |||||||||||       |||| ||||||||    
T  35469009 agatatatccgtagaaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaacattttgcgataaattttttgcccaggctctat 35469108  T
Q  117 aaaattcctagctccgccactga 139  Q
    ||||||||| |||| ||||||||    
T  35469109 aaaattcctggctcagccactga 35469131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 17 - 138
Target Start/End: Complemental strand, 14832820 - 14832699
Alignment:
Q  17 agatatatccgcaggaaatgtgaaattatctgcaggaaatgtaacattatttgcaggaaggaagtaacgttttgcgataannnnnnngccctggctctat 116  Q
    ||||||||||| |||||||||||||||||||||||||||||| | |||||| ||||||||||||||| ||||||||||||       |||| | ||||||    
T  14832820 agatatatccgtaggaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaatgttttgcgataaattttttgcccagactctat 14832721  T
Q  117 aaaattcctagctccgccactg 138  Q
    |||||| || ||||||||||||    
T  14832720 aaaatttctggctccgccactg 14832699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 17 - 96
Target Start/End: Original strand, 15504055 - 15504134
Alignment:
Q  17 agatatatccgcaggaaatgtgaaattatctgcaggaaatgtaacattatttgcaggaaggaagtaacgttttgcgataa 96  Q
    |||||||||||||||||||||||||||||||||||||||||| | |||||| |||||||||||||||| |||||||||||    
T  15504055 agatatatccgcaggaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaacattttgcgataa 15504134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 17 - 139
Target Start/End: Original strand, 34444072 - 34444195
Alignment:
Q  17 agatatatccgcaggaaatgtgaaattatctgcaggaaatgtaacattatttgcaggaaggaagtaacgttttgcgataa-nnnnnnngccctggctcta 115  Q
    ||||||||||| |||||||||||| ||||||||||||||||| | |||||| | ||||||||||||||||||||||||||        |||| ||||||     
T  34444072 agatatatccgtaggaaatgtgaatttatctgcaggaaatgtgaaattattcgtaggaaggaagtaacgttttgcgataattttttttgcccaggctctc 34444171  T
Q  116 taaaattcctagctccgccactga 139  Q
    ||||||||||||||||||||||||    
T  34444172 taaaattcctagctccgccactga 34444195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 24 - 138
Target Start/End: Complemental strand, 7162086 - 7161972
Alignment:
Q  24 tccgcaggaaatgtgaaattatctgcaggaaatgtaacattatttgcaggaaggaagtaacgttttgcgataannnnnnngccctggctctataaaattc 123  Q
    |||||||||||||||||||||||  |||||||||| | ||||||||||||||||||||||| |||||||||||       |||| ||||||||||||||     
T  7162086 tccgcaggaaatgtgaaattatccacaggaaatgtgaaattatttgcaggaaggaagtaacattttgcgataatttttttgcccaggctctataaaattt 7161987  T
Q  124 ctagctccgccactg 138  Q
    || ||||||||||||    
T  7161986 ctggctccgccactg 7161972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 17 - 138
Target Start/End: Original strand, 2476471 - 2476592
Alignment:
Q  17 agatatatccgcaggaaatgtgaaattatctgcaggaaatgtaacattatttgcaggaaggaagtaacgttttgcgataannnnnnngccctggctctat 116  Q
    ||||||||||| |||||||||||| ||||||||||||||||| | |||||| | ||||||||||||||||||||||||||       |||| ||||||||    
T  2476471 agatatatccgtaggaaatgtgaatttatctgcaggaaatgtgaaattattcgtaggaaggaagtaacgttttgcgataaattttttgcccaggctctat 2476570  T
Q  117 aaaattcctagctccgccactg 138  Q
    | |||| || ||||||||||||    
T  2476571 ataatttctggctccgccactg 2476592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 29 - 138
Target Start/End: Complemental strand, 1672484 - 1672375
Alignment:
Q  29 aggaaatgtgaaattatctgcaggaaatgtaacattatttgcaggaaggaagtaacgttttgcgataannnnnnngccctggctctataaaattcctagc 128  Q
    ||||||||||||||||||||||| |||||| | |||||| |||||||||||||||| |||||||||||       |||| |||||||||||||| || ||    
T  1672484 aggaaatgtgaaattatctgcagaaaatgtgaaattattcgcaggaaggaagtaacattttgcgataatttttttgcccaggctctataaaatttctggc 1672385  T
Q  129 tccgccactg 138  Q
    ||||||||||    
T  1672384 tccgccactg 1672375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 17 - 96
Target Start/End: Original strand, 30249071 - 30249150
Alignment:
Q  17 agatatatccgcaggaaatgtgaaattatctgcaggaaatgtaacattatttgcaggaaggaagtaacgttttgcgataa 96  Q
    ||||||||||| ||||||||||||||||||||||| |||||| | ||||||||||||||| ||| |||||||||||||||    
T  30249071 agatatatccgtaggaaatgtgaaattatctgcagaaaatgtgaaattatttgcaggaagaaagcaacgttttgcgataa 30249150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 24 - 96
Target Start/End: Complemental strand, 32953670 - 32953598
Alignment:
Q  24 tccgcaggaaatgtgaaattatctgcaggaaatgtaacattatttgcaggaaggaagtaacgttttgcgataa 96  Q
    ||||||||||||||||||||||||||||||||||| | |||||| | |||||||||||||| |||||||||||    
T  32953670 tccgcaggaaatgtgaaattatctgcaggaaatgtgaaattattcgtaggaaggaagtaacattttgcgataa 32953598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 17 - 96
Target Start/End: Original strand, 6900873 - 6900952
Alignment:
Q  17 agatatatccgcaggaaatgtgaaattatctgcaggaaatgtaacattatttgcaggaaggaagtaacgttttgcgataa 96  Q
    ||||||||||||| |||||||||||||||| ||||||||||| | |||||| ||| |||||||||||| |||||||||||    
T  6900873 agatatatccgcaagaaatgtgaaattatccgcaggaaatgtgaaattattcgcatgaaggaagtaacattttgcgataa 6900952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 23 - 138
Target Start/End: Complemental strand, 13942755 - 13942641
Alignment:
Q  23 atccgcaggaaatgtgaaattatctgcaggaaatgtaacattatttgcaggaaggaagtaacgttttgcgataannnnnnngccctggctctataaaatt 122  Q
    |||||||||||||||||| |||||  |||||||||| | |||||| ||||||||||||||||||||||||||||        ||| ||||||||||||||    
T  13942755 atccgcaggaaatgtgaa-ttatccacaggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataatttttttacccaggctctataaaatt 13942657  T
Q  123 cctagctccgccactg 138  Q
     || ||||||||||||    
T  13942656 tctggctccgccactg 13942641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 24 - 138
Target Start/End: Original strand, 16567904 - 16568018
Alignment:
Q  24 tccgcaggaaatgtgaaattatctgcaggaaatgtaacattatttgcaggaaggaagtaacgttttgcgataannnnnnngccctggctctataaaattc 123  Q
    ||||||||||||||||||||||| ||||||||||| | ||||||  ||||||||||||||| |||||||||||       ||||  |||||||||||||     
T  16567904 tccgcaggaaatgtgaaattatccgcaggaaatgtgaaattattcccaggaaggaagtaacattttgcgataatttttttgcccaagctctataaaattt 16568003  T
Q  124 ctagctccgccactg 138  Q
    ||  |||||||||||    
T  16568004 ctgactccgccactg 16568018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 23 - 96
Target Start/End: Complemental strand, 36234558 - 36234485
Alignment:
Q  23 atccgcaggaaatgtgaaattatctgcaggaaatgtaacattatttgcaggaaggaagtaacgttttgcgataa 96  Q
    |||||||||||||||||||||||||||| ||||||| | |||||| ||| |||||||||||| |||||||||||    
T  36234558 atccgcaggaaatgtgaaattatctgcaagaaatgtgaaattattcgcaagaaggaagtaacattttgcgataa 36234485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 23 - 138
Target Start/End: Complemental strand, 12267385 - 12267271
Alignment:
Q  23 atccgcaggaaatgtgaaattatctgcaggaaatgtaacattatttgcaggaaggaagtaacgttttgcgataannnnnnngccctggctctataaaatt 122  Q
    |||||||||||||||||| ||||| |||| |||||| | ||||||  |||||||||||||||||||||||||||       |||| |||||||||||||     
T  12267385 atccgcaggaaatgtgaa-ttatccgcagaaaatgtgaaattattcacaggaaggaagtaacgttttgcgataaactttttgcccaggctctataaaatg 12267287  T
Q  123 cctagctccgccactg 138  Q
     || ||||||||||||    
T  12267286 tctggctccgccactg 12267271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 24 - 139
Target Start/End: Complemental strand, 43228645 - 43228530
Alignment:
Q  24 tccgcaggaaatgtgaaattatctgcaggaaatgtaacattatttgcaggaaggaagtaacgttttgcgataannnnnnngccctggctctataaaattc 123  Q
    ||||||||||||||||||||||||||| ||||| | | |||||| ||||||| | |||||| ||||||||| |       |||| ||||||||||||||     
T  43228645 tccgcaggaaatgtgaaattatctgcaagaaatatgaaattattcgcaggaaaggagtaacattttgcgattagttttttgcccaggctctataaaattt 43228546  T
Q  124 ctagctccgccactga 139  Q
    || |||||||||||||    
T  43228545 ctggctccgccactga 43228530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 50 - 139
Target Start/End: Original strand, 33007025 - 33007114
Alignment:
Q  50 aggaaatgtaacattatttgcaggaaggaagtaacgttttgcgataannnnnnngccctggctctataaaattcctagctccgccactga 139  Q
    ||||||||| | |||||| ||||||||||||||||||||||||||||       |||| | ||||||||||||||| |||||||||||||    
T  33007025 aggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaattttttgcccagactctataaaattcctggctccgccactga 33007114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 50 - 139
Target Start/End: Original strand, 34846485 - 34846574
Alignment:
Q  50 aggaaatgtaacattatttgcaggaaggaagtaacgttttgcgataannnnnnngccctggctctataaaattcctagctccgccactga 139  Q
    ||||||||| | |||||| ||||||||||||||||||||||||||||       | || ||||||||||||||||| |||||||||||||    
T  34846485 aggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaattttttgtccaggctctataaaattcctggctccgccactga 34846574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 43 - 139
Target Start/End: Original strand, 21069153 - 21069249
Alignment:
Q  43 tatctgcaggaaatgtaacattatttgcaggaaggaagtaacgttttgcgataannnnnnngccctggctctataaaattcctagctccgccactga 139  Q
    |||||||||||||||| | ||||||| |||||||||| ||||||||||||||||       |||| | |||||||||||| || ||||| |||||||    
T  21069153 tatctgcaggaaatgtgaaattatttccaggaaggaaataacgttttgcgataaattttttgcccagactctataaaatttctggctccaccactga 21069249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 27 - 96
Target Start/End: Original strand, 767414 - 767483
Alignment:
Q  27 gcaggaaatgtgaaattatctgcaggaaatgtaacattatttgcaggaaggaagtaacgttttgcgataa 96  Q
    |||||||||||||||||||| |||| |||||  | |||||| |||||||| |||||||||||||| ||||    
T  767414 gcaggaaatgtgaaattatccgcagaaaatgagaaattattcgcaggaagaaagtaacgttttgcaataa 767483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 48 - 138
Target Start/End: Original strand, 37552051 - 37552141
Alignment:
Q  48 gcaggaaatgtaacattatttgcaggaaggaagtaacgttttgcgataannnnnnngccctggctctataaaattcctagctccgccactg 138  Q
    ||||||||||| | |||||| |||||||||||||||| |||||| ||||       |||| |||||||||||||| || ||||| ||||||    
T  37552051 gcaggaaatgtgaaattattcgcaggaaggaagtaacattttgcaataatttttttgcccaggctctataaaatttctggctccaccactg 37552141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 48 - 138
Target Start/End: Original strand, 37654881 - 37654971
Alignment:
Q  48 gcaggaaatgtaacattatttgcaggaaggaagtaacgttttgcgataannnnnnngccctggctctataaaattcctagctccgccactg 138  Q
    ||||||||||| | |||||| |||||||||||||||| |||||| ||||       |||| |||||||||||||| || ||||| ||||||    
T  37654881 gcaggaaatgtgaaattattcgcaggaaggaagtaacattttgcaataatttttttgcccaggctctataaaatttctggctccaccactg 37654971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 96
Target Start/End: Original strand, 37607573 - 37607621
Alignment:
Q  48 gcaggaaatgtaacattatttgcaggaaggaagtaacgttttgcgataa 96  Q
    ||||||||||| | ||||||||| ||||||||||||| |||| ||||||    
T  37607573 gcaggaaatgtgaaattatttgctggaaggaagtaacattttacgataa 37607621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 77; Significance: 7e-36; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 17 - 138
Target Start/End: Original strand, 4728665 - 4728786
Alignment:
Q  17 agatatatccgcaggaaatgtgaaattatctgcaggaaatgtaacattatttgcaggaaggaagtaacgttttgcgataannnnnnngccctggctctat 116  Q
    ||||||||| | ||||||||||||||||||||||| |||||| | |||||||||||||||||||||||||||||||||||       |||| ||||||||    
T  4728665 agatatatctgtaggaaatgtgaaattatctgcagaaaatgtgaaattatttgcaggaaggaagtaacgttttgcgataaattttttgcccaggctctat 4728764  T
Q  117 aaaattcctagctccgccactg 138  Q
    ||||||||||||||||||||||    
T  4728765 aaaattcctagctccgccactg 4728786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 17 - 138
Target Start/End: Original strand, 4552292 - 4552413
Alignment:
Q  17 agatatatccgcaggaaatgtgaaattatctgcaggaaatgtaacattatttgcaggaaggaagtaacgttttgcgataannnnnnngccctggctctat 116  Q
    ||||||||||| |||||||||||| ||||||||||||||||| | |||||||| ||||||||||||||||||||||||||       |||| | ||||||    
T  4552292 agatatatccgtaggaaatgtgaatttatctgcaggaaatgtgaaattatttgtaggaaggaagtaacgttttgcgataaattttttgcccagactctat 4552391  T
Q  117 aaaattcctagctccgccactg 138  Q
    ||||||||| ||||||||||||    
T  4552392 aaaattcctggctccgccactg 4552413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 17 - 137
Target Start/End: Original strand, 10715763 - 10715883
Alignment:
Q  17 agatatatccgcaggaaatgtgaaattatctgcaggaaatgtaacattatttgcaggaaggaagtaacgttttgcgataannnnnnngccctggctctat 116  Q
    ||||||||||| |||||||||||||||||||||||||||||| | |||||| ||||||||||||||| ||||||||||||       |||| ||||||||    
T  10715763 agatatatccgtaggaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaatgttttgcgataaattttttgcccaggctctat 10715862  T
Q  117 aaaattcctagctccgccact 137  Q
    ||||| ||| |||||||||||    
T  10715863 aaaatacctggctccgccact 10715883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 17 - 137
Target Start/End: Original strand, 10929533 - 10929653
Alignment:
Q  17 agatatatccgcaggaaatgtgaaattatctgcaggaaatgtaacattatttgcaggaaggaagtaacgttttgcgataannnnnnngccctggctctat 116  Q
    ||||||||||| |||||||||||||||||||||||||||||| | |||||| ||||||||||||||| ||||||||||||       |||| ||||||||    
T  10929533 agatatatccgtaggaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaatgttttgcgataaattttttgcccaggctctat 10929632  T
Q  117 aaaattcctagctccgccact 137  Q
    ||||| ||| |||||||||||    
T  10929633 aaaatacctggctccgccact 10929653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 17 - 139
Target Start/End: Complemental strand, 2017446 - 2017324
Alignment:
Q  17 agatatatccgcaggaaatgtgaaattatctgcaggaaatgtaacattatttgcaggaaggaagtaacgttttgcgataannnnnnngccctggctctat 116  Q
    ||||||||||| |||||||||||| ||||||| ||||||||| | |||||| | ||||||||||||||||||||||||||       |||| |||| |||    
T  2017446 agatatatccgtaggaaatgtgaatttatctgtaggaaatgtgaaattattcgtaggaaggaagtaacgttttgcgataaattttttgcccaggctttat 2017347  T
Q  117 aaaattcctagctccgccactga 139  Q
    ||||||||| |||||||||||||    
T  2017346 aaaattcctggctccgccactga 2017324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 23 - 139
Target Start/End: Original strand, 52373867 - 52373983
Alignment:
Q  23 atccgcaggaaatgtgaaattatctgcaggaaatgtaacattatttgcaggaaggaagtaacgttttgcgataannnnnnngccctggctctataaaatt 122  Q
    ||||||| |||||||||||||||| ||||||||||| | |||||| ||||||||||||||||||||||||||||       || | | ||||||||||||    
T  52373867 atccgcatgaaatgtgaaattatccgcaggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaattttttgcacagactctataaaatt 52373966  T
Q  123 cctagctccgccactga 139  Q
    ||| |||||||||||||    
T  52373967 cctggctccgccactga 52373983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 17 - 138
Target Start/End: Original strand, 32005990 - 32006111
Alignment:
Q  17 agatatatccgcaggaaatgtgaaattatctgcaggaaatgtaacattatttgcaggaaggaagtaacgttttgcgataannnnnnngccctggctctat 116  Q
    ||||||||||| |||||||||||| |||| |||||||||||| | |||||| | ||||||||||||||||||||||||||       |||| | ||||||    
T  32005990 agatatatccgtaggaaatgtgaatttatttgcaggaaatgtgaaattattcgtaggaaggaagtaacgttttgcgataaattttttgcccagactctat 32006089  T
Q  117 aaaattcctagctccgccactg 138  Q
    ||||||| |  |||||||||||    
T  32006090 aaaattcatgactccgccactg 32006111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 17 - 138
Target Start/End: Original strand, 40969331 - 40969452
Alignment:
Q  17 agatatatccgcaggaaatgtgaaattatctgcaggaaatgtaacattatttgcaggaaggaagtaacgttttgcgataannnnnnngccctggctctat 116  Q
    ||||||||||| ||||||||||||||||||||||| |||| | | |||||| |||| |||||||||||||||||||||||       ||||  |||||||    
T  40969331 agatatatccgtaggaaatgtgaaattatctgcagaaaatatgaaattattcgcagaaaggaagtaacgttttgcgataaattttttgcccaagctctat 40969430  T
Q  117 aaaattcctagctccgccactg 138  Q
    |||||| || |||||| |||||    
T  40969431 aaaattgctggctccgtcactg 40969452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 17 - 138
Target Start/End: Original strand, 46645710 - 46645831
Alignment:
Q  17 agatatatccgcaggaaatgtgaaattatctgcaggaaatgtaacattatttgcaggaaggaagtaacgttttgcgataannnnnnngccctggctctat 116  Q
    ||||||||||| || |||| ||||||||| | |||||||||| | |||||| ||||||||||||||||||||||||||||        ||| | ||||||    
T  46645710 agatatatccgtagaaaatatgaaattatatacaggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaatttttttcccagactctat 46645809  T
Q  117 aaaattcctagctccgccactg 138  Q
    ||||||||| ||||||||||||    
T  46645810 aaaattcctggctccgccactg 46645831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 27 - 96
Target Start/End: Original strand, 50099987 - 50100056
Alignment:
Q  27 gcaggaaatgtgaaattatctgcaggaaatgtaacattatttgcaggaaggaagtaacgttttgcgataa 96  Q
    |||||||||||||||||||| ||||||||||| | |||||| | ||||||||||||||||||||||||||    
T  50099987 gcaggaaatgtgaaattatccgcaggaaatgtgaaattattcgtaggaaggaagtaacgttttgcgataa 50100056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 21 - 96
Target Start/End: Complemental strand, 2521903 - 2521828
Alignment:
Q  21 atatccgcaggaaatgtgaaattatctgcaggaaatgtaacattatttgcaggaaggaagtaacgttttgcgataa 96  Q
    |||||||||| |||||||| |||||| ||||||||||| | |||||| ||||||||||||||||||||| ||||||    
T  2521903 atatccgcagaaaatgtgatattatccgcaggaaatgtgaaattattcgcaggaaggaagtaacgttttacgataa 2521828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 50 - 137
Target Start/End: Original strand, 10058656 - 10058743
Alignment:
Q  50 aggaaatgtaacattatttgcaggaaggaagtaacgttttgcgataannnnnnngccctggctctataaaattcctagctccgccact 137  Q
    ||||||||| | |||||| ||||||||||||||||||||||||||||       |||| ||||||||||||||||| |||||||||||    
T  10058656 aggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaattttttgcccaggctctataaaattcctggctccgccact 10058743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 29 - 96
Target Start/End: Complemental strand, 43003181 - 43003114
Alignment:
Q  29 aggaaatgtgaaattatctgcaggaaatgtaacattatttgcaggaaggaagtaacgttttgcgataa 96  Q
    |||||||||||||||||||||||||||||| | |||||| ||||||| ||||||||||| ||| ||||    
T  43003181 aggaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaagaagtaacgttctgcaataa 43003114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 19 - 138
Target Start/End: Original strand, 2576281 - 2576400
Alignment:
Q  19 atatatccgcaggaaatgtgaaattatctgcaggaaatgtaacattatttgcaggaaggaagtaacgttttgcgataannnnnnngccctggctctataa 118  Q
    ||||||||| ||||||||| ||||||||||||| |||| | | |||| | |||| |||||||||||||||||||||||       |||| | || |||||    
T  2576281 atatatccgtaggaaatgtaaaattatctgcagaaaatatgaaattaatcgcagaaaggaagtaacgttttgcgataatttttttgcccagactttataa 2576380  T
Q  119 aattcctagctccgccactg 138  Q
    ||||| | ||||||||||||    
T  2576381 aattcttggctccgccactg 2576400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 43 - 138
Target Start/End: Original strand, 25237721 - 25237816
Alignment:
Q  43 tatctgcaggaaatgtaacattatttgcaggaaggaagtaacgttttgcgataannnnnnngccctggctctataaaattcctagctccgccactg 138  Q
    |||| ||||||||||| | |||||| |||||||||||||||||||||| |||||       ||||  |||||||| ||||||||||||||||||||    
T  25237721 tatccgcaggaaatgtgaaattattcgcaggaaggaagtaacgttttgtgataaaaaatttgcccatgctctatataattcctagctccgccactg 25237816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 24 - 138
Target Start/End: Original strand, 9003669 - 9003783
Alignment:
Q  24 tccgcaggaaatgtgaaattatctgcaggaaatgtaacattatttgcaggaaggaagtaacgttttgcgataannnnnnngccctggctctataaaattc 123  Q
    |||||||||||||||||||||||   ||||||||| | |||||| ||| |||||||||||| |||||||||||       | || ||||||||||||||     
T  9003669 tccgcaggaaatgtgaaattatccataggaaatgtgaaattattcgcaagaaggaagtaacattttgcgataatttttttgtccaggctctataaaattt 9003768  T
Q  124 ctagctccgccactg 138  Q
    ||  |||||||||||    
T  9003769 ctgactccgccactg 9003783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 23 - 91
Target Start/End: Original strand, 50383987 - 50384055
Alignment:
Q  23 atccgcaggaaatgtgaaattatctgcaggaaatgtaacattatttgcaggaaggaagtaacgttttgc 91  Q
    ||||| |||||||||||||| ||| ||||||| | ||| |||||| |||||||||||||||||||||||    
T  50383987 atccgtaggaaatgtgaaataatccgcaggaattataaaattattcgcaggaaggaagtaacgttttgc 50384055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 18 - 96
Target Start/End: Original strand, 1585777 - 1585855
Alignment:
Q  18 gatatatccgcaggaaatgtgaaattatctgcaggaaatgtaacattatttgcaggaaggaagtaacgttttgcgataa 96  Q
    |||||||||| ||||||||| || ||||||||||||||||| | |||||| | | |||| ||| |||||||||||||||    
T  1585777 gatatatccgtaggaaatgtaaatttatctgcaggaaatgtgaaattattcgtacgaagaaagcaacgttttgcgataa 1585855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 23 - 96
Target Start/End: Original strand, 49745168 - 49745242
Alignment:
Q  23 atccgcaggaaatgtgaaattatctgcag-gaaatgtaacattatttgcaggaaggaagtaacgttttgcgataa 96  Q
    |||||||||||||||||||||||| ||||  |||||||| |||||| |||||||||| ||||| |||| ||||||    
T  49745168 atccgcaggaaatgtgaaattatccgcagaaaaatgtaaaattattcgcaggaaggacgtaacattttacgataa 49745242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 50 - 135
Target Start/End: Original strand, 31364254 - 31364339
Alignment:
Q  50 aggaaatgtaacattatttgcaggaaggaagtaacgttttgcgataannnnnnngccctggctctataaaattcctagctccgcca 135  Q
    ||||||||| | |||||| ||||||||||||||||||||||||||||       ||||  ||||||||||||| || |||||||||    
T  31364254 aggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaattttttgcccatgctctataaaatttctggctccgcca 31364339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 48 - 135
Target Start/End: Original strand, 32828281 - 32828368
Alignment:
Q  48 gcaggaaatgtaacattatttgcaggaaggaagtaacgttttgcgataannnnnnngccctggctctataaaattcctagctccgcca 135  Q
    ||||||||||||| ||||||||||||||||||||||  ||||| |||||       |||| ||| |||||||||| || |||||||||    
T  32828281 gcaggaaatgtaaaattatttgcaggaaggaagtaatattttgtgataatttttttgcccaggccctataaaatttctggctccgcca 32828368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 96
Target Start/End: Complemental strand, 41972420 - 41972372
Alignment:
Q  48 gcaggaaatgtaacattatttgcaggaaggaagtaacgttttgcgataa 96  Q
    |||| |||||| | |||||| ||||||||||||||||||||||||||||    
T  41972420 gcagaaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataa 41972372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 75
Target Start/End: Complemental strand, 43003208 - 43003156
Alignment:
Q  23 atccgcaggaaatgtgaaattatctgcaggaaatgtaacattatttgcaggaa 75  Q
    ||||||||||||||| |||||||| | ||||||||| | ||||| ||||||||    
T  43003208 atccgcaggaaatgttaaattatcggtaggaaatgtgaaattatctgcaggaa 43003156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 74; Significance: 4e-34; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 17 - 139
Target Start/End: Complemental strand, 6799894 - 6799772
Alignment:
Q  17 agatatatccgcaggaaatgtgaaattatctgcaggaaatgtaacattatttgcaggaaggaagtaacgttttgcgataannnnnnngccctggctctat 116  Q
    ||||||||||| |||||||||||||||||||||||||||||| | |||||| ||||||||||| |||||||||| |||||       |||| ||||||||    
T  6799894 agatatatccgtaggaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaactaacgttttgtgataaaaaatttgcccaggctctat 6799795  T
Q  117 aaaattcctagctccgccactga 139  Q
    |||||||||||||||||||||||    
T  6799794 aaaattcctagctccgccactga 6799772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 149 - 216
Target Start/End: Complemental strand, 18708484 - 18708417
Alignment:
Q  149 caaccccaaatggattgaagagatgaatcttttaattacaactttttattgtttataaaatgtcttga 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18708484 caaccccaaatggattgaagagatgaatcttttaattacaactttttattgtttataaaatgtcttga 18708417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 17 - 140
Target Start/End: Complemental strand, 41114878 - 41114755
Alignment:
Q  17 agatatatccgcaggaaatgtgaaattatctgcaggaaatgtaacattatttgcaggaaggaagtaacgttttgcgataannnnnnngccctggctctat 116  Q
    ||||||||||| |||||||||||||||||||||||||||||| | |||||| ||| ||||||||||||||||||||||||       ||||  |||||||    
T  41114878 agatatatccgtaggaaatgtgaaattatctgcaggaaatgtgaaattattcgcatgaaggaagtaacgttttgcgataaattttttgcccaagctctat 41114779  T
Q  117 aaaattcctagctccgccactgac 140  Q
    ||||||||| ||||| ||||||||    
T  41114778 aaaattcctggctcctccactgac 41114755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 17 - 139
Target Start/End: Original strand, 29257473 - 29257595
Alignment:
Q  17 agatatatccgcaggaaatgtgaaattatctgcaggaaatgtaacattatttgcaggaaggaagtaacgttttgcgataannnnnnngccctggctctat 116  Q
    ||||||||||| |||||||||||| ||||||||||||||||| | |||||| |||| |||||||||||||||||||||||       |||| | ||||||    
T  29257473 agatatatccgtaggaaatgtgaacttatctgcaggaaatgtgaaattattcgcagaaaggaagtaacgttttgcgataaattttttgcccagactctat 29257572  T
Q  117 aaaattcctagctccgccactga 139  Q
    ||||||||| |||||||||||||    
T  29257573 aaaattcctggctccgccactga 29257595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 23 - 139
Target Start/End: Original strand, 17148909 - 17149025
Alignment:
Q  23 atccgcaggaaatgtgaaattatctgcaggaaatgtaacattatttgcaggaaggaagtaacgttttgcgataannnnnnngccctggctctataaaatt 122  Q
    |||||||||||||||| ||||||||||||||||||| | |||||| |||||||||||||||||||||| |||||       ||||  |||| ||||||||    
T  17148909 atccgcaggaaatgtggaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaacgttttgagataaattttttgcccaagctcaataaaatt 17149008  T
Q  123 cctagctccgccactga 139  Q
     ||||||||||||||||    
T  17149009 tctagctccgccactga 17149025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 17 - 140
Target Start/End: Complemental strand, 304100 - 303977
Alignment:
Q  17 agatatatccgcaggaaatgtgaaattatctgcaggaaatgtaacattatttgcaggaaggaagtaacgttttgcgataannnnnnngccctggctctat 116  Q
    |||||||||||||||||||||||||||||||||||||||||| | |||||| ||||  | ||||||||||||||||||||       ||||   ||||||    
T  304100 agatatatccgcaggaaatgtgaaattatctgcaggaaatgtgaaattattcgcagataagaagtaacgttttgcgataatttttttgcccaaactctat 304001  T
Q  117 aaaattcctagctccgccactgac 140  Q
    |||||| || ||||||||||||||    
T  304000 aaaatttctggctccgccactgac 303977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 22 - 139
Target Start/End: Original strand, 41010624 - 41010741
Alignment:
Q  22 tatccgcaggaaatgtgaaattatctgcaggaaatgtaacattatttgcaggaaggaagtaacgttttgcgataannnnnnngccctggctctataaaat 121  Q
    |||||| ||||||||||||||| |||||||||||||| | |||||| ||||||||||||||||||||||||||||       | ||   |||||||||||    
T  41010624 tatccgtaggaaatgtgaaattttctgcaggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaattttttgtccacactctataaaat 41010723  T
Q  122 tcctagctccgccactga 139  Q
    ||||||||||| ||||||    
T  41010724 tcctagctccgtcactga 41010741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 17 - 140
Target Start/End: Original strand, 12000663 - 12000787
Alignment:
Q  17 agatatatccgcaggaaatgtgaaattatctgcagg-aaatgtaacattatttgcaggaaggaagtaacgttttgcgataannnnnnngccctggctcta 115  Q
    |||||||||||||||||||||||||||||| || || |||||||| |||||| |||||||||| ||||| |||||||||||       |||  |||||||    
T  12000663 agatatatccgcaggaaatgtgaaattatccgccggaaaatgtaaaattattcgcaggaaggacgtaacattttgcgataatttttttgcctaggctcta 12000762  T
Q  116 taaaattcctagctccgccactgac 140  Q
    || ||||||| ||||||||||||||    
T  12000763 tataattcctggctccgccactgac 12000787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 17 - 96
Target Start/End: Complemental strand, 18299151 - 18299072
Alignment:
Q  17 agatatatccgcaggaaatgtgaaattatctgcaggaaatgtaacattatttgcaggaaggaagtaacgttttgcgataa 96  Q
    ||||||||| | |||||||||||||||||||||||||||||| | |||||| ||||||||||||||||||||| ||||||    
T  18299151 agatatatctgtaggaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaacgttttacgataa 18299072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 22 - 134
Target Start/End: Original strand, 25563084 - 25563196
Alignment:
Q  22 tatccgcaggaaatgtgaaattatctgcaggaaatgtaacattatttgcaggaaggaagtaacgttttgcgataannnnnnngccctggctctataaaat 121  Q
    ||||| ||||||||||||||||||||||||||||| | | ||||||||||| |||||||||||||||||||||||        |||  ||||||||||||    
T  25563084 tatccccaggaaatgtgaaattatctgcaggaaatatgaaattatttgcagaaaggaagtaacgttttgcgataaaaaaatttcccaagctctataaaat 25563183  T
Q  122 tcctagctccgcc 134  Q
    |||| ||||||||    
T  25563184 tcctggctccgcc 25563196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 21 - 138
Target Start/End: Original strand, 13203878 - 13203995
Alignment:
Q  21 atatccgcaggaaatgtgaaattatctgcaggaaatgtaacattatttgcaggaaggaagtaacgttttgcgataannnnnnngccctggctctataaaa 120  Q
    ||||||| ||||||||||||||||||||| | |||||| | |||||| || ||||||||||||| |||||||||||       || |  |||||||||||    
T  13203878 atatccgtaggaaatgtgaaattatctgcggaaaatgtgaaattattcgctggaaggaagtaacattttgcgataaattttttgctcatgctctataaaa 13203977  T
Q  121 ttcctagctccgccactg 138  Q
    ||||| ||||||||||||    
T  13203978 ttcctggctccgccactg 13203995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 17 - 96
Target Start/End: Original strand, 15651347 - 15651427
Alignment:
Q  17 agatatatccgcaggaaatgtgaaattatctgcagg-aaatgtaacattatttgcaggaaggaagtaacgttttgcgataa 96  Q
    |||||||||| ||||||||||||||||||| ||||| |||||||| |||||| |||||||||| ||||| |||||||||||    
T  15651347 agatatatccccaggaaatgtgaaattatccgcaggaaaatgtaaaattattcgcaggaaggacgtaacattttgcgataa 15651427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 48 - 138
Target Start/End: Original strand, 2475944 - 2476034
Alignment:
Q  48 gcaggaaatgtaacattatttgcaggaaggaagtaacgttttgcgataannnnnnngccctggctctataaaattcctagctccgccactg 138  Q
    ||||||||||| | |||||| ||||||||||||||||||||||||||||       |||| |||||||||||||||||  ||| |||||||    
T  2475944 gcaggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataatttttttgcccaggctctataaaattcctgactctgccactg 2476034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 43 - 140
Target Start/End: Original strand, 17249463 - 17249560
Alignment:
Q  43 tatctgcaggaaatgtaacattatttgcaggaaggaagtaacgttttgcgataannnnnnngccctggctctataaaattcctagctccgccactgac 140  Q
    |||| ||||||||||| | |||||| |||||||| |||||||||||||| ||||       |||| | |||||||||||||||  |||||||||||||    
T  17249463 tatccgcaggaaatgtgaaattattcgcaggaagaaagtaacgttttgctataaatattttgcccagactctataaaattcctgactccgccactgac 17249560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 50 - 138
Target Start/End: Complemental strand, 22572697 - 22572609
Alignment:
Q  50 aggaaatgtaacattatttgcaggaaggaagtaacgttttgcgataannnnnnngccctggctctataaaattcctagctccgccactg 138  Q
    ||||||||| | |||||| |||||||| |||||||||||||||||||       | || |||| |||||||||||| ||||||||||||    
T  22572697 aggaaatgtgaaattattcgcaggaagaaagtaacgttttgcgataaattttttgtccaggctttataaaattcctggctccgccactg 22572609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 54
Target Start/End: Original strand, 17249458 - 17249495
Alignment:
Q  17 agatatatccgcaggaaatgtgaaattatctgcaggaa 54  Q
    |||||||||||||||||||||||||||||  |||||||    
T  17249458 agatatatccgcaggaaatgtgaaattattcgcaggaa 17249495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 96
Target Start/End: Complemental strand, 45444436 - 45444383
Alignment:
Q  43 tatctgcaggaaatgtaacattatttgcaggaaggaagtaacgttttgcgataa 96  Q
    ||||| |||||||||| | |||||| ||||||||||||||| ||||||| ||||    
T  45444436 tatctacaggaaatgtgaaattattcgcaggaaggaagtaatgttttgcaataa 45444383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 140
Target Start/End: Original strand, 1542858 - 1542894
Alignment:
Q  104 gccctggctctataaaattcctagctccgccactgac 140  Q
    |||| ||||||||||||||||| ||||||||||||||    
T  1542858 gcccaggctctataaaattcctggctccgccactgac 1542894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 135
Target Start/End: Complemental strand, 16220992 - 16220919
Alignment:
Q  62 attatttgcaggaaggaagtaacgttttgcgataannnnnnngccctggctctataaaattcctagctccgcca 135  Q
    ||||| ||||| |||||| ||||||||||||||||       |||| |||||||||||||| || |||||||||    
T  16220992 attatatgcagaaaggaaataacgttttgcgataatttttttgcccaggctctataaaatttctggctccgcca 16220919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 75
Target Start/End: Original strand, 25563064 - 25563116
Alignment:
Q  23 atccgcaggaaatgtgaaattatctgcaggaaatgtaacattatttgcaggaa 75  Q
    |||| |||||||||||||||||||  |||||||||| | ||||| ||||||||    
T  25563064 atccacaggaaatgtgaaattatccccaggaaatgtgaaattatctgcaggaa 25563116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 75
Target Start/End: Original strand, 41010604 - 41010656
Alignment:
Q  23 atccgcaggaaatgtgaaattatctgcaggaaatgtaacattatttgcaggaa 75  Q
    |||||||||||||||||||||||| | ||||||||| | ||| | ||||||||    
T  41010604 atccgcaggaaatgtgaaattatccgtaggaaatgtgaaattttctgcaggaa 41010656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 72; Significance: 7e-33; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 17 - 137
Target Start/End: Complemental strand, 36406498 - 36406378
Alignment:
Q  17 agatatatccgcaggaaatgtgaaattatctgcaggaaatgtaacattatttgcaggaaggaagtaacgttttgcgataannnnnnngccctggctctat 116  Q
    ||||||||||| |||||||||||||||||||||| ||||||| | |||||| ||||||||||||||||||||||||||||       |||| ||||||||    
T  36406498 agatatatccgtaggaaatgtgaaattatctgcaagaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaattttttgcccaggctctat 36406399  T
Q  117 aaaattcctagctccgccact 137  Q
    ||||||||| |||||||||||    
T  36406398 aaaattcctggctccgccact 36406378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 17 - 96
Target Start/End: Complemental strand, 3384028 - 3383949
Alignment:
Q  17 agatatatccgcaggaaatgtgaaattatctgcaggaaatgtaacattatttgcaggaaggaagtaacgttttgcgataa 96  Q
    ||||||||||| |||||||||||| |||||||||||||| || | |||||| | ||||||||||||||||||||||||||    
T  3384028 agatatatccgtaggaaatgtgaatttatctgcaggaaacgtgaaattattcgtaggaaggaagtaacgttttgcgataa 3383949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 22 - 96
Target Start/End: Complemental strand, 34282864 - 34282790
Alignment:
Q  22 tatccgcaggaaatgtgaaattatctgcaggaaatgtaacattatttgcaggaaggaagtaacgttttgcgataa 96  Q
    |||||||| ||||||||||||||| |||||||||||| | |||||| ||||||||||||||||||| ||||||||    
T  34282864 tatccgcatgaaatgtgaaattatttgcaggaaatgtgaaattattcgcaggaaggaagtaacgttgtgcgataa 34282790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 17 - 138
Target Start/End: Original strand, 28928166 - 28928287
Alignment:
Q  17 agatatatccgcaggaaatgtgaaattatctgcaggaaatgtaacattatttgcaggaaggaagtaacgttttgcgataannnnnnngccctggctctat 116  Q
    ||||||||| | ||||||||||||||||||||||| |||||| | |||||| |||||||||||||||| |||| ||||||        ||| | |||| |    
T  28928166 agatatatctgtaggaaatgtgaaattatctgcagaaaatgtgaaattattcgcaggaaggaagtaactttttacgataaattttttacccagactcttt 28928265  T
Q  117 aaaattcctagctccgccactg 138  Q
    ||||||||| ||||||||||||    
T  28928266 aaaattcctggctccgccactg 28928287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 27 - 135
Target Start/End: Complemental strand, 27321861 - 27321753
Alignment:
Q  27 gcaggaaatgtgaaattatctgcaggaaatgtaacattatttgcaggaaggaagtaacgttttgcgataannnnnnngccctggctctataaaattccta 126  Q
    |||||| |||||||||||||||||| |||||| | |||||| |||||||||||||||| |||||||||||       |||| |||||||||||||| ||     
T  27321861 gcaggatatgtgaaattatctgcagaaaatgtgaaattattcgcaggaaggaagtaacattttgcgataatttttttgcccaggctctataaaatttctg 27321762  T
Q  127 gctccgcca 135  Q
    |||| ||||    
T  27321761 gctctgcca 27321753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 36 - 135
Target Start/End: Complemental strand, 35384355 - 35384256
Alignment:
Q  36 gtgaaattatctgcaggaaatgtaacattatttgcaggaaggaagtaacgttttgcgataannnnnnngccctggctctataaaattcctagctccgcca 135  Q
    ||||||||||||| ||||||||| | |||||| | |||||||||||| |||||||||||||       ||||  |||||||||||||||| |||||||||    
T  35384355 gtgaaattatctggaggaaatgtgaaattattcgtaggaaggaagtaccgttttgcgataaattttttgcccaagctctataaaattcctggctccgcca 35384256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 23 - 75
Target Start/End: Complemental strand, 34282884 - 34282832
Alignment:
Q  23 atccgcaggaaatgtgaaattatctgcaggaaatgtaacattatttgcaggaa 75  Q
    |||||||||||||||||||||||| ||| ||||||| | ||||||||||||||    
T  34282884 atccgcaggaaatgtgaaattatccgcatgaaatgtgaaattatttgcaggaa 34282832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 126
Target Start/End: Original strand, 13243242 - 13243346
Alignment:
Q  22 tatccgcaggaaatgtgaaattatctgcaggaaatgtaacattatttgcaggaaggaagtaacgttttgcgataannnnnnngccctggctctataaaat 121  Q
    |||||||||||||||||||||||||| ||  |||||| | |||||| ||| |||  |||||||||||| ||||||       || | |||||||||||||    
T  13243242 tatccgcaggaaatgtgaaattatctccacaaaatgtgaaattattggcaagaaaaaagtaacgttttacgataaattttttgctcaggctctataaaat 13243341  T
Q  122 tccta 126  Q
    |||||    
T  13243342 tccta 13243346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 47 - 138
Target Start/End: Original strand, 24965148 - 24965239
Alignment:
Q  47 tgcaggaaatgtaacattatttgcaggaaggaagtaacgttttgcgataannnnnnngccctggctctataaaattcctagctccgccactg 138  Q
    |||||||||||| | |||||| |||| ||| |||||| ||||||||||||       |||| ||||||||||||||||| |||| |||||||    
T  24965148 tgcaggaaatgtgaaattattcgcagaaagaaagtaaggttttgcgataaattttttgcccaggctctataaaattcctggctctgccactg 24965239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 48 - 138
Target Start/End: Original strand, 38214863 - 38214953
Alignment:
Q  48 gcaggaaatgtaacattatttgcaggaaggaagtaacgttttgcgataannnnnnngccctggctctataaaattcctagctccgccactg 138  Q
    ||||||||||| | |||||| ||||||| |||||||| |||||||||||       ||||  ||||||||||||| || ||||||||||||    
T  38214863 gcaggaaatgtgaaattattcgcaggaatgaagtaacattttgcgataatttttttgcccaagctctataaaatttctggctccgccactg 38214953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 58
Target Start/End: Complemental strand, 39431638 - 39431597
Alignment:
Q  17 agatatatccgcaggaaatgtgaaattatctgcaggaaatgt 58  Q
    ||||||||||||| ||||||||||||||||| ||||||||||    
T  39431638 agatatatccgcatgaaatgtgaaattatctacaggaaatgt 39431597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 109 - 138
Target Start/End: Original strand, 8968579 - 8968608
Alignment:
Q  109 ggctctataaaattcctagctccgccactg 138  Q
    ||||||||||||||||||||||||||||||    
T  8968579 ggctctataaaattcctagctccgccactg 8968608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 138
Target Start/End: Original strand, 21958802 - 21958830
Alignment:
Q  110 gctctataaaattcctagctccgccactg 138  Q
    |||||||||||||||||||||||||||||    
T  21958802 gctctataaaattcctagctccgccactg 21958830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 70; Significance: 1e-31; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 17 - 139
Target Start/End: Original strand, 2941329 - 2941451
Alignment:
Q  17 agatatatccgcaggaaatgtgaaattatctgcaggaaatgtaacattatttgcaggaaggaagtaacgttttgcgataannnnnnngccctggctctat 116  Q
    ||||||||||| |||||||||||||||||||||||||||||| | |||||| | ||||||||||||||||||||||||||       |||| ||||||||    
T  2941329 agatatatccgtaggaaatgtgaaattatctgcaggaaatgtgaaattattcgtaggaaggaagtaacgttttgcgataaattttttgcccaggctctat 2941428  T
Q  117 aaaattcctagctccgccactga 139  Q
    ||||||||| ||||| |||||||    
T  2941429 aaaattcctggctccaccactga 2941451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 17 - 96
Target Start/End: Original strand, 9696162 - 9696241
Alignment:
Q  17 agatatatccgcaggaaatgtgaaattatctgcaggaaatgtaacattatttgcaggaaggaagtaacgttttgcgataa 96  Q
    ||||||||||| |||||||||||||||||||||||||||||| | |||||| ||||||||||||||||||||||||||||    
T  9696162 agatatatccgtaggaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataa 9696241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 17 - 96
Target Start/End: Complemental strand, 23663768 - 23663689
Alignment:
Q  17 agatatatccgcaggaaatgtgaaattatctgcaggaaatgtaacattatttgcaggaaggaagtaacgttttgcgataa 96  Q
    ||||||||||| || ||||||||||||||||||||||||||| | |||||| ||||||| ||||||||||||||||||||    
T  23663768 agatatatccgtagaaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaatgaagtaacgttttgcgataa 23663689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 17 - 123
Target Start/End: Complemental strand, 34249022 - 34248916
Alignment:
Q  17 agatatatccgcaggaaatgtgaaattatctgcaggaaatgtaacattatttgcaggaaggaagtaacgttttgcgataannnnnnngccctggctctat 116  Q
    ||||||||||| || |||| |||||||||||||||||||||| | |||||  ||||||||||||||||||||||||||||       |||| ||||||||    
T  34249022 agatatatccgtagaaaatatgaaattatctgcaggaaatgtgaaattatccgcaggaaggaagtaacgttttgcgataaattttttgcccaggctctat 34248923  T
Q  117 aaaattc 123  Q
    |||||||    
T  34248922 aaaattc 34248916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 24 - 137
Target Start/End: Complemental strand, 10397811 - 10397698
Alignment:
Q  24 tccgcaggaaatgtgaaattatctgcaggaaatgtaacattatttgcaggaaggaagtaacgttttgcgataannnnnnngccctggctctataaaattc 123  Q
    |||| ||||||||||||||||||||  |||||||| | |||||| ||||||||||||||||||||||||||||       |||| | |||||||||||||    
T  10397811 tccgtaggaaatgtgaaattatctgttggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaattttttgcccagactctataaaattc 10397712  T
Q  124 ctagctccgccact 137  Q
    || | |||||||||    
T  10397711 ctggttccgccact 10397698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 17 - 138
Target Start/End: Original strand, 15122150 - 15122271
Alignment:
Q  17 agatatatccgcaggaaatgtgaaattatctgcaggaaatgtaacattatttgcaggaaggaagtaacgttttgcgataannnnnnngccctggctctat 116  Q
    ||||||||||| ||||||||| ||||||||||||| |||||| | |||||| |||| ||| |||||||||||||||||||       ||||   ||||||    
T  15122150 agatatatccgtaggaaatgtaaaattatctgcagaaaatgtgaaattattcgcagaaagaaagtaacgttttgcgataaattttttgcccaaactctat 15122249  T
Q  117 aaaattcctagctccgccactg 138  Q
    |||||||||  |||||||||||    
T  15122250 aaaattcctgactccgccactg 15122271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 28 - 86
Target Start/End: Complemental strand, 2836165 - 2836107
Alignment:
Q  28 caggaaatgtgaaattatctgcaggaaatgtaacattatttgcaggaaggaagtaacgt 86  Q
    ||||||||||||||||||||||||||||||| | |||||| ||||||||||||||||||    
T  2836165 caggaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaacgt 2836107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 17 - 136
Target Start/End: Original strand, 15529053 - 15529172
Alignment:
Q  17 agatatatccgcaggaaatgtgaaattatctgcaggaaatgtaacattatttgcaggaaggaagtaacgttttgcgataannnnnnngccctggctctat 116  Q
    ||||||||| | |||||||||||| ||||||||||||||||| | |||||| | ||||| ||||||| ||||||||||||       |||  ||||||||    
T  15529053 agatatatctgtaggaaatgtgaatttatctgcaggaaatgtgaaattattcgtaggaaagaagtaatgttttgcgataaattttttgcctaggctctat 15529152  T
Q  117 aaaattcctagctccgccac 136  Q
    |||||||||  |||||||||    
T  15529153 aaaattcctgactccgccac 15529172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 24 - 96
Target Start/End: Complemental strand, 28614406 - 28614334
Alignment:
Q  24 tccgcaggaaatgtgaaattatctgcaggaaatgtaacattatttgcaggaaggaagtaacgttttgcgataa 96  Q
    |||| |||||||||||||||||| |||| |||||| | |||||| |||||||||||||||| |||||||||||    
T  28614406 tccgtaggaaatgtgaaattatcagcagaaaatgtgaaattattcgcaggaaggaagtaacattttgcgataa 28614334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 17 - 138
Target Start/End: Complemental strand, 31188321 - 31188200
Alignment:
Q  17 agatatatccgcaggaaatgtgaaattatctgcaggaaatgtaacattatttgcaggaaggaagtaacgttttgcgataannnnnnngccctggctctat 116  Q
    |||||||||| ||| |||| |||||||||| | || |||||| | ||||||  |||||||||||||||||||||||||||       |||| ||||||||    
T  31188321 agatatatcctcagaaaatttgaaattatccgtagaaaatgtgaaattattcacaggaaggaagtaacgttttgcgataatttttttgcccaggctctat 31188222  T
Q  117 aaaattcctagctccgccactg 138  Q
    ||||||| | |||||| |||||    
T  31188221 aaaattcatggctccgtcactg 31188200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 29 - 96
Target Start/End: Complemental strand, 14938919 - 14938852
Alignment:
Q  29 aggaaatgtgaaattatctgcaggaaatgtaacattatttgcaggaaggaagtaacgttttgcgataa 96  Q
    |||||||||||||||||||||||||||||| | ||||||  ||||||| ||||||| |||||||||||    
T  14938919 aggaaatgtgaaattatctgcaggaaatgtgaaattattcccaggaagaaagtaacattttgcgataa 14938852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 48 - 138
Target Start/End: Original strand, 339476 - 339566
Alignment:
Q  48 gcaggaaatgtaacattatttgcaggaaggaagtaacgttttgcgataannnnnnngccctggctctataaaattcctagctccgccactg 138  Q
    ||||||||||| | |||| |||||||||||||||||| |||||||||||       ||||  ||||||||||||| |||||||||||||||    
T  339476 gcaggaaatgtgaaattaattgcaggaaggaagtaacattttgcgataaattttttgcccaagctctataaaatttctagctccgccactg 339566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 19 - 96
Target Start/End: Complemental strand, 9046922 - 9046845
Alignment:
Q  19 atatatccgcaggaaatgtgaaattatctgcaggaaatgtaacattatttgcaggaaggaagtaacgttttgcgataa 96  Q
    ||||||| | |||||||||||||||||||||||||||||| | ||||||   ||||||||| ||||||||| ||||||    
T  9046922 atatatctgtaggaaatgtgaaattatctgcaggaaatgtgaaattattcaaaggaaggaaataacgttttccgataa 9046845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 32 - 137
Target Start/End: Original strand, 2960794 - 2960899
Alignment:
Q  32 aaatgtgaaattatctgcaggaaatgtaacattatttgcaggaaggaagtaacgttttgcgataannnnnnngccctggctctataaaattcctagctcc 131  Q
    ||||||||||||||| ||||||||||| | |||||| ||| |||||||||||| |||||| ||||       || | |||||||||||||| || |||||    
T  2960794 aaatgtgaaattatccgcaggaaatgtgaaattattcgcaagaaggaagtaacattttgcaataattttttcgctcaggctctataaaatttctggctcc 2960893  T
Q  132 gccact 137  Q
    ||||||    
T  2960894 gccact 2960899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 89
Target Start/End: Complemental strand, 31200166 - 31200094
Alignment:
Q  17 agatatatccgcaggaaatgtgaaattatctgcaggaaatgtaacattatttgcaggaaggaagtaacgtttt 89  Q
    ||||||||| |||||||||||||||||||| |  | |||||| | |||||| |||||||||||||||||||||    
T  31200166 agatatatctgcaggaaatgtgaaattatccgtggaaaatgtgaaattattcgcaggaaggaagtaacgtttt 31200094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 23 - 135
Target Start/End: Original strand, 34188911 - 34189023
Alignment:
Q  23 atccgcaggaaatgtgaaattatctgcaggaaatgtaacattatttgcaggaaggaagtaacgttttgcgataannnnnnngccctggctctataaaatt 122  Q
    |||||||||||||||||||||||| ||||||||||| | |||||| ||| ||  || |||||||||||||| ||       || | ||||||| ||||||    
T  34188911 atccgcaggaaatgtgaaattatccgcaggaaatgtgaaattattcgcaagagagaggtaacgttttgcgacaaattttttgctcaggctctagaaaatt 34189010  T
Q  123 cctagctccgcca 135  Q
    ||| |||||||||    
T  34189011 cctggctccgcca 34189023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 50 - 136
Target Start/End: Complemental strand, 1781019 - 1780933
Alignment:
Q  50 aggaaatgtaacattatttgcaggaaggaagtaacgttttgcgataannnnnnngccctggctctataaaattcctagctccgccac 136  Q
    ||||||||| | |||||| ||||||||||||||||||||||||||||       |||| | ||||||||||||||| |||| |||||    
T  1781019 aggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaattttatgcccagactctataaaattcctggctctgccac 1780933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 70; Significance: 1e-31; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 17 - 139
Target Start/End: Original strand, 44305518 - 44305640
Alignment:
Q  17 agatatatccgcaggaaatgtgaaattatctgcaggaaatgtaacattatttgcaggaaggaagtaacgttttgcgataannnnnnngccctggctctat 116  Q
    ||||||||||| |||||||||||| ||||||||||||||||| | |||||| | ||||||||||||||||||||||||||       |||| ||||||||    
T  44305518 agatatatccgtaggaaatgtgaatttatctgcaggaaatgtgaaattattcgtaggaaggaagtaacgttttgcgataatttttttgcccaggctctat 44305617  T
Q  117 aaaattcctagctccgccactga 139  Q
    ||||||||| |||||||||||||    
T  44305618 aaaattcctggctccgccactga 44305640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 17 - 138
Target Start/End: Original strand, 14727436 - 14727557
Alignment:
Q  17 agatatatccgcaggaaatgtgaaattatctgcaggaaatgtaacattatttgcaggaaggaagtaacgttttgcgataannnnnnngccctggctctat 116  Q
    ||||||||| | |||||||||||||||||||||||||||||| | |||||| ||||||||||||||||||||||||||||       |||| ||||||||    
T  14727436 agatatatctgtaggaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataatttttttgcccaggctctat 14727535  T
Q  117 aaaattcctagctccgccactg 138  Q
    |||||| || ||||||||||||    
T  14727536 aaaatttctggctccgccactg 14727557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 17 - 138
Target Start/End: Original strand, 25007570 - 25007691
Alignment:
Q  17 agatatatccgcaggaaatgtgaaattatctgcaggaaatgtaacattatttgcaggaaggaagtaacgttttgcgataannnnnnngccctggctctat 116  Q
    ||||||||||| |||||||||||| ||||||||||||||||| | |||||| | ||||||||||||||||||||||||||       |||| ||||||||    
T  25007570 agatatatccgtaggaaatgtgaatttatctgcaggaaatgtgaaattattcgtaggaaggaagtaacgttttgcgataaattttttgcccaggctctat 25007669  T
Q  117 aaaattcctagctccgccactg 138  Q
    ||||||||| ||||||||||||    
T  25007670 aaaattcctggctccgccactg 25007691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 17 - 135
Target Start/End: Complemental strand, 37153999 - 37153881
Alignment:
Q  17 agatatatccgcaggaaatgtgaaattatctgcaggaaatgtaacattatttgcaggaaggaagtaacgttttgcgataannnnnnngccctggctctat 116  Q
    ||||||||||| |||||||||||| ||||||||||||||||| | |||||| | ||||||||||||||||||||||||||       |||| ||||||||    
T  37153999 agatatatccgtaggaaatgtgaatttatctgcaggaaatgtgaaattattcgtaggaaggaagtaacgttttgcgataaattttttgcccaggctctat 37153900  T
Q  117 aaaattcctagctccgcca 135  Q
    ||||||||| |||||||||    
T  37153899 aaaattcctggctccgcca 37153881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 17 - 94
Target Start/End: Complemental strand, 4642046 - 4641969
Alignment:
Q  17 agatatatccgcaggaaatgtgaaattatctgcaggaaatgtaacattatttgcaggaaggaagtaacgttttgcgat 94  Q
    ||||||||||||||||||| |||||||||| ||||||||||| | |||||| ||||||||||||||||||||||||||    
T  4642046 agatatatccgcaggaaatatgaaattatccgcaggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgat 4641969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 17 - 96
Target Start/End: Complemental strand, 25011546 - 25011467
Alignment:
Q  17 agatatatccgcaggaaatgtgaaattatctgcaggaaatgtaacattatttgcaggaaggaagtaacgttttgcgataa 96  Q
    ||||||||||| ||||||||||||||||||||||| ||||| || |||||| ||| ||||||||||||||||||||||||    
T  25011546 agatatatccgtaggaaatgtgaaattatctgcagaaaatgcaaaattattcgcatgaaggaagtaacgttttgcgataa 25011467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 17 - 138
Target Start/End: Complemental strand, 27584022 - 27583905
Alignment:
Q  17 agatatatccgcaggaaatgtgaaattatctgcaggaaatgtaacattatttgcaggaaggaagtaacgttttgcgataannnnnnngccctggctctat 116  Q
    ||||||||||| |||||||||||||||||||||||||||||| | |||||| ||    ||||||||||||||||||||||       || | ||||||||    
T  27584022 agatatatccgtaggaaatgtgaaattatctgcaggaaatgtgaaattattcgc----aggaagtaacgttttgcgataaattttttgctcaggctctat 27583927  T
Q  117 aaaattcctagctccgccactg 138  Q
    ||||||||| ||||||||||||    
T  27583926 aaaattcctggctccgccactg 27583905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 17 - 139
Target Start/End: Complemental strand, 1428428 - 1428306
Alignment:
Q  17 agatatatccgcaggaaatgtgaaattatctgcaggaaatgtaacattatttgcaggaaggaagtaacgttttgcgataannnnnnngccctggctctat 116  Q
    ||||||||||| ||||||||||||  ||||||||| |||||| | |||||| | |||||||||||||||||||||| |||       |||| ||||||||    
T  1428428 agatatatccgtaggaaatgtgaatctatctgcagaaaatgtgaaattattcgtaggaaggaagtaacgttttgcggtaaattttttgcccaggctctat 1428329  T
Q  117 aaaattcctagctccgccactga 139  Q
    ||||||||| ||||||| |||||    
T  1428328 aaaattcctggctccgctactga 1428306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 24 - 138
Target Start/End: Original strand, 27460792 - 27460905
Alignment:
Q  24 tccgcaggaaatgtgaaattatctgcaggaaatgtaacattatttgcaggaaggaagtaacgttttgcgataannnnnnngccctggctctataaaattc 123  Q
    |||| |||||||||||||||||||||||||||||| | |||||| ||||||||||||||| ||||||||||||        ||| |||||||||||||||    
T  27460792 tccgtaggaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaatgttttgcgataaatttttt-cccaggctctataaaattc 27460890  T
Q  124 ctagctccgccactg 138  Q
     | ||||||||||||    
T  27460891 ttggctccgccactg 27460905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 24 - 138
Target Start/End: Original strand, 4774085 - 4774199
Alignment:
Q  24 tccgcaggaaatgtgaaattatctgcaggaaatgtaacattatttgcaggaaggaagtaacgttttgcgataannnnnnngccctggctctataaaattc 123  Q
    ||||||||||||||||||||||| ||| ||||||| | |||||| |||||||| ||||||| |||||||||||       |||| | ||||||||||||     
T  4774085 tccgcaggaaatgtgaaattatccgcaagaaatgtgaaattattcgcaggaagaaagtaacattttgcgataatttttttgcccagactctataaaattt 4774184  T
Q  124 ctagctccgccactg 138  Q
    || ||||||||||||    
T  4774185 ctggctccgccactg 4774199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 43 - 137
Target Start/End: Complemental strand, 33468954 - 33468860
Alignment:
Q  43 tatctgcaggaaatgtaacattatttgcaggaaggaagtaacgttttgcgataannnnnnngccctggctctataaaattcctagctccgccact 137  Q
    |||||| ||||||||| | |||||| ||||||||||||||||||||||||||||       |||| ||||||||||||||||| |||||||||||    
T  33468954 tatctgtaggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaattttttgcccaggctctataaaattcctggctccgccact 33468860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 50 - 138
Target Start/End: Complemental strand, 31844617 - 31844529
Alignment:
Q  50 aggaaatgtaacattatttgcaggaaggaagtaacgttttgcgataannnnnnngccctggctctataaaattcctagctccgccactg 138  Q
    ||||||||| | |||||| |||||||||||||||| |||||||||||       |||| | ||||||||||||||| ||||||||||||    
T  31844617 aggaaatgtgaaattattcgcaggaaggaagtaacattttgcgataaattttttgcccagactctataaaattcctggctccgccactg 31844529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 50 - 138
Target Start/End: Original strand, 6331804 - 6331892
Alignment:
Q  50 aggaaatgtaacattatttgcaggaaggaagtaacgttttgcgataannnnnnngccctggctctataaaattcctagctccgccactg 138  Q
    ||||||||| | |||||||| ||||||||||||||||||||||||||       || |  |||||||||||||||| | ||||||||||    
T  6331804 aggaaatgtgaaattatttgaaggaaggaagtaacgttttgcgataaattttttgctcatgctctataaaattcctggttccgccactg 6331892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 58
Target Start/End: Complemental strand, 44238850 - 44238809
Alignment:
Q  17 agatatatccgcaggaaatgtgaaattatctgcaggaaatgt 58  Q
    ||||||||||||| |||||||||||||||| |||||||||||    
T  44238850 agatatatccgcatgaaatgtgaaattatccgcaggaaatgt 44238809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 141
Target Start/End: Original strand, 24646185 - 24646278
Alignment:
Q  48 gcaggaaatgtaacattatttgcaggaaggaagtaacgttttgcgataannnnnnngccctggctctataaaattcctagctccgccactgacc 141  Q
    ||||||||| | | |||||| ||| |||||||||||| ||||| |||||       |||| ||||||||||||||||| ||||||| |||||||    
T  24646185 gcaggaaatttgaaattattcgcatgaaggaagtaacattttgagataatttttttgcccaggctctataaaattcctggctccgcaactgacc 24646278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 138
Target Start/End: Original strand, 34459253 - 34459348
Alignment:
Q  43 tatctgcaggaaatgtaacattatttgcaggaaggaagtaacgttttgcgataannnnnnngccctggctctataaaattcctagctccgccactg 138  Q
    |||||| ||||||||| | |||||| |  ||||||||||||||||||| |||||       |||| | ||||||||||||||| |||||| |||||    
T  34459253 tatctgtaggaaatgtgaaattattcgtgggaaggaagtaacgttttgtgataaattttttgcccagactctataaaattcctggctccgtcactg 34459348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 96
Target Start/End: Complemental strand, 48940409 - 48940335
Alignment:
Q  22 tatccgcaggaaatgtgaaattatctgcaggaaatgtaacattatttgcaggaaggaagtaacgttttgcgataa 96  Q
    |||| ||||||||||||||||||||||||  |||||| | |||||| |||| || ||| ||| ||||||| ||||    
T  48940409 tatctgcaggaaatgtgaaattatctgcaaaaaatgtgaaattattcgcagtaaagaaataaagttttgcaataa 48940335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 68; Significance: 2e-30; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 17 - 137
Target Start/End: Original strand, 14461177 - 14461297
Alignment:
Q  17 agatatatccgcaggaaatgtgaaattatctgcaggaaatgtaacattatttgcaggaaggaagtaacgttttgcgataannnnnnngccctggctctat 116  Q
    ||||||||||| |||||||||||| ||||||||||||||||||| |||||| | |||||||||||||||||||| |||||       |||| ||||||||    
T  14461177 agatatatccgtaggaaatgtgaatttatctgcaggaaatgtaaaattattcgtaggaaggaagtaacgttttgtgataaattttttgcccaggctctat 14461276  T
Q  117 aaaattcctagctccgccact 137  Q
    ||||||||| |||||||||||    
T  14461277 aaaattcctggctccgccact 14461297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 17 - 138
Target Start/End: Original strand, 28311389 - 28311510
Alignment:
Q  17 agatatatccgcaggaaatgtgaaattatctgcaggaaatgtaacattatttgcaggaaggaagtaacgttttgcgataannnnnnngccctggctctat 116  Q
    ||||||||||| |||||||||||| ||||||||||||||||| | |||||| | ||||||||||||| ||||||||||||       |||| | ||||||    
T  28311389 agatatatccgtaggaaatgtgaatttatctgcaggaaatgtgaaattattcgtaggaaggaagtaatgttttgcgataaattttttgcccagactctat 28311488  T
Q  117 aaaattcctagctccgccactg 138  Q
    ||||||||| ||||||||||||    
T  28311489 aaaattcctggctccgccactg 28311510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 17 - 96
Target Start/End: Original strand, 7501068 - 7501147
Alignment:
Q  17 agatatatccgcaggaaatgtgaaattatctgcaggaaatgtaacattatttgcaggaaggaagtaacgttttgcgataa 96  Q
    ||||||||||| |||||||||||||||||||||||||||||| | |||||| |||||||| |||||||||||||||||||    
T  7501068 agatatatccgtaggaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaagtaagtaacgttttgcgataa 7501147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 23 - 139
Target Start/End: Complemental strand, 41218358 - 41218242
Alignment:
Q  23 atccgcaggaaatgtgaaattatctgcaggaaatgtaacattatttgcaggaaggaagtaacgttttgcgataannnnnnngccctggctctataaaatt 122  Q
    ||||||||||||||| |||||||||||||||||||| | |||||| ||||||||||||||||||||||||||||       |||  | ||||||||||||    
T  41218358 atccgcaggaaatgtaaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaattttttgcctagactctataaaatt 41218259  T
Q  123 cctagctccgccactga 139  Q
    |||  ||||||||||||    
T  41218258 cctgactccgccactga 41218242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 17 - 135
Target Start/End: Complemental strand, 33179101 - 33178983
Alignment:
Q  17 agatatatccgcaggaaatgtgaaattatctgcaggaaatgtaacattatttgcaggaaggaagtaacgttttgcgataannnnnnngccctggctctat 116  Q
    |||||||||||||| |||||||||||||||||||| |||||| | |||||| ||||||| ||||||||||||||||||||       |||| | ||||||    
T  33179101 agatatatccgcagaaaatgtgaaattatctgcagaaaatgtgaaattattcgcaggaatgaagtaacgttttgcgataaattttttgcccagactctat 33179002  T
Q  117 aaaattcctagctccgcca 135  Q
    |||||||||  ||||||||    
T  33179001 aaaattcctgactccgcca 33178983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 17 - 96
Target Start/End: Original strand, 44047696 - 44047775
Alignment:
Q  17 agatatatccgcaggaaatgtgaaattatctgcaggaaatgtaacattatttgcaggaaggaagtaacgttttgcgataa 96  Q
    ||||||||||| |||||||||||| ||||||||||||||||| | |||||||| ||||| ||||||||||||||||||||    
T  44047696 agatatatccgtaggaaatgtgaatttatctgcaggaaatgtgaaattatttgtaggaaagaagtaacgttttgcgataa 44047775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 17 - 138
Target Start/End: Original strand, 12909940 - 12910059
Alignment:
Q  17 agatatatccgcaggaaatgtgaaattatctgcaggaaatgtaacattatttgcaggaaggaagtaacgttttgcgataannnnnnngccctggctctat 116  Q
    ||||||||||| |||||||||||| |||||| |||||||||| | ||||||  | |||||||||||||| ||||||||||       |||| ||||||||    
T  12909940 agatatatccgtaggaaatgtgaatttatctacaggaaatgtgaaattatt--cgggaaggaagtaacgatttgcgataaattttttgcccaggctctat 12910037  T
Q  117 aaaattcctagctccgccactg 138  Q
    ||||||||| ||||||||||||    
T  12910038 aaaattcctggctccgccactg 12910059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 17 - 95
Target Start/End: Complemental strand, 43700202 - 43700124
Alignment:
Q  17 agatatatccgcaggaaatgtgaaattatctgcaggaaatgtaacattatttgcaggaaggaagtaacgttttgcgata 95  Q
    |||||||||||  ||||||||||||||||||||||||||||| | |||||| |||| || |||||||||||||||||||    
T  43700202 agatatatccgttggaaatgtgaaattatctgcaggaaatgtgaaattattcgcagaaaagaagtaacgttttgcgata 43700124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 50 - 138
Target Start/End: Original strand, 37516766 - 37516854
Alignment:
Q  50 aggaaatgtaacattatttgcaggaaggaagtaacgttttgcgataannnnnnngccctggctctataaaattcctagctccgccactg 138  Q
    ||||||||| | |||||| ||||||||||||||||||||||||||||       |||| ||||||||||||||||| ||||||||||||    
T  37516766 aggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaattttttgcccaggctctataaaattcctggctccgccactg 37516854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 17 - 135
Target Start/End: Original strand, 53652010 - 53652128
Alignment:
Q  17 agatatatccgcaggaaatgtgaaattatctgcaggaaatgtaacattatttgcaggaaggaagtaacgttttgcgataannnnnnngccctggctctat 116  Q
    ||||||||||| |||||||||||| ||||||||||||||||| | |||||| | |||||| | |||| ||||||||||||       | || | ||||||    
T  53652010 agatatatccgtaggaaatgtgaatttatctgcaggaaatgtgaaattattcgtaggaagaacgtaatgttttgcgataaattttttgtccagactctat 53652109  T
Q  117 aaaattcctagctccgcca 135  Q
    ||||||||| |||||||||    
T  53652110 aaaattcctggctccgcca 53652128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 50 - 137
Target Start/End: Complemental strand, 26371018 - 26370931
Alignment:
Q  50 aggaaatgtaacattatttgcaggaaggaagtaacgttttgcgataannnnnnngccctggctctataaaattcctagctccgccact 137  Q
    ||||||||| | |||||| ||||||||||||||||||||||||||||       |||| | ||||||||||||||| |||||||||||    
T  26371018 aggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaattttttgcccagactctataaaattcctggctccgccact 26370931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 96
Target Start/End: Original strand, 53987974 - 53988022
Alignment:
Q  48 gcaggaaatgtaacattatttgcaggaaggaagtaacgttttgcgataa 96  Q
    ||||||||||| | |||||| |||||||||||||||| |||||| ||||    
T  53987974 gcaggaaatgtgaaattattcgcaggaaggaagtaacattttgcaataa 53988022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0618 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: scaffold0618
Description:

Target: scaffold0618; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 17 - 139
Target Start/End: Original strand, 1802 - 1924
Alignment:
Q  17 agatatatccgcaggaaatgtgaaattatctgcaggaaatgtaacattatttgcaggaaggaagtaacgttttgcgataannnnnnngccctggctctat 116  Q
    ||||||||||| |||||||||||| ||||||||||||||||| | |||||| |||| |||||||||||||||||||||||       |||| | ||||||    
T  1802 agatatatccgtaggaaatgtgaacttatctgcaggaaatgtgaaattattcgcagaaaggaagtaacgttttgcgataaattttttgcccagactctat 1901  T
Q  117 aaaattcctagctccgccactga 139  Q
    ||||||||| |||||||||||||    
T  1902 aaaattcctggctccgccactga 1924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0075 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: scaffold0075
Description:

Target: scaffold0075; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 17 - 139
Target Start/End: Original strand, 11630 - 11752
Alignment:
Q  17 agatatatccgcaggaaatgtgaaattatctgcaggaaatgtaacattatttgcaggaaggaagtaacgttttgcgataannnnnnngccctggctctat 116  Q
    ||||||||||| |||||||||||| ||||||||||||||||| | |||||| | ||||||||||||||||||||||||||       |||| || |||||    
T  11630 agatatatccgtaggaaatgtgaatttatctgcaggaaatgtgaaattattcgtaggaaggaagtaacgttttgcgataaattttttgcccaggttctat 11729  T
Q  117 aaaattcctagctccgccactga 139  Q
    ||||||||| |||||||||||||    
T  11730 aaaattcctggctccgccactga 11752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0075; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 18 - 133
Target Start/End: Original strand, 7018 - 7132
Alignment:
Q  18 gatatatccgcaggaaatgtgaaattatctgcaggaaatgtaacattatttgcaggaaggaagtaacgttttgcgataannnnnnngccctggctctata 117  Q
    |||||||||| |||||||||||| ||||| ||||||||||||| |||||| | ||||||||||||||| ||||||||||       |||| || ||||||    
T  7018 gatatatccgtaggaaatgtgaatttatcagcaggaaatgtaaaattattcgtaggaaggaagtaacg-tttgcgataaattttttgcccaggttctata 7116  T
Q  118 aaattcctagctccgc 133  Q
    ||||||||||||||||    
T  7117 aaattcctagctccgc 7132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 4e-25; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 24 - 139
Target Start/End: Complemental strand, 22206688 - 22206573
Alignment:
Q  24 tccgcaggaaatgtgaaattatctgcaggaaatgtaacattatttgcaggaaggaagtaacgttttgcgataannnnnnngccctggctctataaaattc 123  Q
    |||||||||||||||| |||||| ||||||||||| | |||||| |||||||||||||||| |||||||||||       |||| ||||||||||||||     
T  22206688 tccgcaggaaatgtgagattatccgcaggaaatgtgaaattattcgcaggaaggaagtaacattttgcgataattttcttgcccaggctctataaaattt 22206589  T
Q  124 ctagctccgccactga 139  Q
    || |||||||||||||    
T  22206588 cttgctccgccactga 22206573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 24 - 139
Target Start/End: Original strand, 22228051 - 22228166
Alignment:
Q  24 tccgcaggaaatgtgaaattatctgcaggaaatgtaacattatttgcaggaaggaagtaacgttttgcgataannnnnnngccctggctctataaaattc 123  Q
    |||||||||||||||| |||||| ||||||||||| | |||||| |||||||||||||||| |||||||||||       |||| ||||||||||||||     
T  22228051 tccgcaggaaatgtgagattatccgcaggaaatgtgaaattattcgcaggaaggaagtaacattttgcgataattttcttgcccaggctctataaaattt 22228150  T
Q  124 ctagctccgccactga 139  Q
    || |||||||||||||    
T  22228151 cttgctccgccactga 22228166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 17 - 96
Target Start/End: Complemental strand, 23704478 - 23704399
Alignment:
Q  17 agatatatccgcaggaaatgtgaaattatctgcaggaaatgtaacattatttgcaggaaggaagtaacgttttgcgataa 96  Q
    ||||||||||| |||||||||||||||||||||||||||||||| |||||| ||| ||| ||||||||||||| ||||||    
T  23704478 agatatatccgtaggaaatgtgaaattatctgcaggaaatgtaaaattattcgcaagaaagaagtaacgttttacgataa 23704399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 17 - 140
Target Start/End: Complemental strand, 35300437 - 35300314
Alignment:
Q  17 agatatatccgcaggaaatgtgaaattatctgcaggaaatgtaacattatttgcaggaaggaagtaacgttttgcgataannnnnnngccctggctctat 116  Q
    ||||||||||| |||||||||||| ||||||||||||||||| | |||||| | | ||||||||||||||||| ||||||        |||  |||||||    
T  35300437 agatatatccgtaggaaatgtgaatttatctgcaggaaatgtgaaattattcgtaagaaggaagtaacgttttacgataaatttttttcccaagctctat 35300338  T
Q  117 aaaattcctagctccgccactgac 140  Q
    ||||||||| ||||||||||||||    
T  35300337 aaaattcctggctccgccactgac 35300314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 23 - 96
Target Start/End: Original strand, 4843432 - 4843505
Alignment:
Q  23 atccgcaggaaatgtgaaattatctgcaggaaatgtaacattatttgcaggaaggaagtaacgttttgcgataa 96  Q
    |||||||||||||||||||||||| ||||||||||| | |||||| ||||||| ||||||||||||||||||||    
T  4843432 atccgcaggaaatgtgaaattatccgcaggaaatgtgaaattattcgcaggaaagaagtaacgttttgcgataa 4843505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 27 - 122
Target Start/End: Complemental strand, 5991419 - 5991324
Alignment:
Q  27 gcaggaaatgtgaaattatctgcaggaaatgtaacattatttgcaggaaggaagtaacgttttgcgataannnnnnngccctggctctataaaatt 122  Q
    |||||||||||||||||||| ||| ||||||||| |||||| |||||||||||||||| |||||||||||       |||| ||||||||||||||    
T  5991419 gcaggaaatgtgaaattatccgcaagaaatgtaaaattattcgcaggaaggaagtaacattttgcgataatttttttgcccaggctctataaaatt 5991324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 22 - 138
Target Start/End: Complemental strand, 28694007 - 28693891
Alignment:
Q  22 tatccgcaggaaatgtgaaattatctgcaggaaatgtaacattatttgcaggaaggaagtaacgttttgcgataannnnnnngccctggctctataaaat 121  Q
    |||||||||||  |||||||||||| | ||||||||| | |||||| |||| |||||||||| ||||||||||||       |||| |||||||||||||    
T  28694007 tatccgcaggatttgtgaaattatccggaggaaatgtgaaattattcgcagaaaggaagtaaagttttgcgataatttttttgcccaggctctataaaat 28693908  T
Q  122 tcctagctccgccactg 138  Q
    |||| |||||| |||||    
T  28693907 tcctggctccgtcactg 28693891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 22 - 137
Target Start/End: Complemental strand, 21932746 - 21932631
Alignment:
Q  22 tatccgcaggaaatgtgaaattatctgcaggaaatgtaacattatttgcaggaaggaagtaacgttttgcgataannnnnnngccctggctctataaaat 121  Q
    |||||||||||||| | |||||||||||||||||| | | |||||| ||||||| |||||||| |||||||||||       |||| | |||||||||||    
T  21932746 tatccgcaggaaatataaaattatctgcaggaaatatgaaattattcgcaggaaagaagtaacattttgcgataaattttttgcccagactctataaaat 21932647  T
Q  122 tcctagctccgccact 137  Q
    ||||  ||||||||||    
T  21932646 tcctgactccgccact 21932631  T

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Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 31 - 96
Target Start/End: Complemental strand, 7873215 - 7873150
Alignment:
Q  31 gaaatgtgaaattatctgcaggaaatgtaacattatttgcaggaaggaagtaacgttttgcgataa 96  Q
    |||||||||||||||| ||||||||||| | |||||| || ||||||||||||| |||||||||||    
T  7873215 gaaatgtgaaattatccgcaggaaatgtgaaattattagcgggaaggaagtaacattttgcgataa 7873150  T

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Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 43 - 138
Target Start/End: Complemental strand, 814956 - 814861
Alignment:
Q  43 tatctgcaggaaatgtaacattatttgcaggaaggaagtaacgttttgcgataannnnnnngccctggctctataaaattcctagctccgccactg 138  Q
    |||| |||| |||||| | |||||| ||||||| ||||||||||||||||||||       |||| | ||||||| ||||||| ||||||||||||    
T  814956 tatccgcagaaaatgtgaaattattagcaggaatgaagtaacgttttgcgataatttttttgcccagactctatataattcctggctccgccactg 814861  T

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Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 43 - 138
Target Start/End: Original strand, 3012454 - 3012549
Alignment:
Q  43 tatctgcaggaaatgtaacattatttgcaggaaggaagtaacgttttgcgataannnnnnngccctggctctataaaattcctagctccgccactg 138  Q
    |||| ||||||||||| | ||||||  |||||||||||||||||||||| ||||       |||| | |||||||||||| || ||||||||||||    
T  3012454 tatccgcaggaaatgtgaaattattcacaggaaggaagtaacgttttgcaataatttttttgcccagactctataaaatttctggctccgccactg 3012549  T

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Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 23 - 96
Target Start/End: Original strand, 19377523 - 19377597
Alignment:
Q  23 atccgcaggaaatgtgaaattatctgcagg-aaatgtaacattatttgcaggaaggaagtaacgttttgcgataa 96  Q
    |||||||||||||||||||||||| ||||| |||||| | |||||| ||||||| ||  |||| |||||||||||    
T  19377523 atccgcaggaaatgtgaaattatccgcaggaaaatgtgaaattattcgcaggaaagacataacattttgcgataa 19377597  T

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Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 52 - 139
Target Start/End: Complemental strand, 26722933 - 26722846
Alignment:
Q  52 gaaatgtaacattatttgcaggaaggaagtaacgttttgcgataannnnnnngccctggctctataaaattcctagctccgccactga 139  Q
    ||||||| | |||||| ||||||||||||||||||||||||||||       ||||  ||||||||||||||||  ||| ||||||||    
T  26722933 gaaatgtgaaattattcgcaggaaggaagtaacgttttgcgataaattttttgcccaagctctataaaattcctgactctgccactga 26722846  T

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Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 47 - 96
Target Start/End: Complemental strand, 38128960 - 38128911
Alignment:
Q  47 tgcaggaaatgtaacattatttgcaggaaggaagtaacgttttgcgataa 96  Q
    |||||||||||| | ||||| |||||||||||| ||||||||||||||||    
T  38128960 tgcaggaaatgtgaaattatctgcaggaaggaaataacgttttgcgataa 38128911  T

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Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 54
Target Start/End: Complemental strand, 38128969 - 38128932
Alignment:
Q  17 agatatatccgcaggaaatgtgaaattatctgcaggaa 54  Q
    ||||||||  ||||||||||||||||||||||||||||    
T  38128969 agatatatgtgcaggaaatgtgaaattatctgcaggaa 38128932  T

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Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 96
Target Start/End: Complemental strand, 38991180 - 38991107
Alignment:
Q  23 atccgcaggaaatgtgaaattatctgcaggaaatgtaacattatttgcaggaaggaagtaacgttttgcgataa 96  Q
    |||||||| ||||||||||||||  | ||||||| | | |||||| |||||||| |  ||||||||||||||||    
T  38991180 atccgcagaaaatgtgaaattattcgtaggaaatatgaaattattcgcaggaagaagataacgttttgcgataa 38991107  T

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Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 45
Target Start/End: Original strand, 3012449 - 3012477
Alignment:
Q  17 agatatatccgcaggaaatgtgaaattat 45  Q
    |||||||||||||||||||||||||||||    
T  3012449 agatatatccgcaggaaatgtgaaattat 3012477  T

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Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 75
Target Start/End: Complemental strand, 21932766 - 21932714
Alignment:
Q  23 atccgcaggaaatgtgaaattatctgcaggaaatgtaacattatttgcaggaa 75  Q
    ||||||| ||| |||||||||||| ||||||||| ||| ||||| ||||||||    
T  21932766 atccgcatgaattgtgaaattatccgcaggaaatataaaattatctgcaggaa 21932714  T

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Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 96
Target Start/End: Original strand, 30852447 - 30852495
Alignment:
Q  48 gcaggaaatgtaacattatttgcaggaaggaagtaacgttttgcgataa 96  Q
    ||||||||||| | |||||| |||||||||||| ||| |||||||||||    
T  30852447 gcaggaaatgtgaaattattcgcaggaaggaagcaacattttgcgataa 30852495  T

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Target: scaffold0638 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0638
Description:

Target: scaffold0638; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 50 - 139
Target Start/End: Original strand, 4217 - 4306
Alignment:
Q  50 aggaaatgtaacattatttgcaggaaggaagtaacgttttgcgataannnnnnngccctggctctataaaattcctagctccgccactga 139  Q
    ||||||||| | |||||| |||||||||||||||| |||||||||||       |||| ||||||||||||||  | |||||||||||||    
T  4217 aggaaatgtgaaattattcgcaggaaggaagtaacattttgcgataatttttttgcccaggctctataaaatttatggctccgccactga 4306  T

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Target: scaffold0015 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 138
Target Start/End: Complemental strand, 214046 - 214018
Alignment:
Q  110 gctctataaaattcctagctccgccactg 138  Q
    |||||||||||||||||||||||||||||    
T  214046 gctctataaaattcctagctccgccactg 214018  T

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