View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8111_low_28 (Length: 223)
Name: NF8111_low_28
Description: NF8111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8111_low_28 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 12 - 206
Target Start/End: Complemental strand, 52962825 - 52962631
Alignment:
| Q |
12 |
cattattctgatatggcaatgtcttcaatcaaaatttgttctcactcatctcaaaacagattctcattacattttgacttctttattggtttctgattgg |
111 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52962825 |
cattcttctgatatggcaatgtcttcaatcaaaatttgttctcactcatctcaaaacagattctcattacattttgacttctttattggtttctgattgg |
52962726 |
T |
|
| Q |
112 |
ttactttgaattttaagtactgtacaagaaaatagtatgggcatttctatcatatgttcctagcaacatacgtgtcatattcagatagtacactg |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52962725 |
ttactttgaattttaagtactgtacaagaaaatagtatgggcatttctatcatatgttcctagcaacatacgtgtcatattcagatagtacactg |
52962631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 12 - 103
Target Start/End: Complemental strand, 52968579 - 52968491
Alignment:
| Q |
12 |
cattattctgatatggcaatgtcttcaatcaaaatttgttctcactcatctcaaaacagattctcattacattttgacttctttattggttt |
103 |
Q |
| |
|
|||| |||||||||| || | |||||||||| ||||||||| ||| ||||||| |||||||| |||||||||||||||| |||||||||| |
|
|
| T |
52968579 |
catttttctgatatgtcagtttcttcaatcagaatttgttcccacacatctca---cagattctgattacattttgacttcattattggttt |
52968491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University