View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8111_low_3 (Length: 662)
Name: NF8111_low_3
Description: NF8111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8111_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 370; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 1 - 394
Target Start/End: Original strand, 16663128 - 16663521
Alignment:
| Q |
1 |
gggaatgaagtagatgttcttgaggattatctgaaggaacttgagagtatgttggatcaccttgtaatcaagaatgtctagttttcttgcttttctatgt |
100 |
Q |
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| T |
16663128 |
gggaatgaagtagatgttcttgaggatcatctgaaggagcttgagagtatgttggatcaccttgtaatcaagactgtctagttttcttgcttttctatgt |
16663227 |
T |
|
| Q |
101 |
gctgaatggaaacgtttatgataaatgtctgatataactcatatctactagtagtattttgaaggttggacaaaatttgcagtggttatgttatctaaaa |
200 |
Q |
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| T |
16663228 |
gctgaatggaaacgtttatgataaatgtctgatataactcatatctactagtagtattttgaaggttggacaaaatttgcagtggttatgttatctaaat |
16663327 |
T |
|
| Q |
201 |
ttgttacttcttttgacttgtaaaccaacattaccatgccaatcttgtgctaaaagactgtaaccataatttgggcactcttgttaccttttcagttaat |
300 |
Q |
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| T |
16663328 |
tttttacttcttttgacttgtaaaccaacattaccatgccaatcttgtgctaaaagactgtaaccatgatttgggcactcttgttaccttttcagttaat |
16663427 |
T |
|
| Q |
301 |
tttgattttatttgattggcttaaaagtttatgtgattagtttacaaagccaaactcttgtggtctgctctagttaacctatttggttatgttg |
394 |
Q |
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| T |
16663428 |
tttgattttatttgattggcttaaaagtttatgtgattagtttacaaagccaaactcttgtggtctgctctagttaacctatttggttatgttg |
16663521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 170; E-Value: 7e-91
Query Start/End: Original strand, 457 - 634
Target Start/End: Original strand, 16663569 - 16663746
Alignment:
| Q |
457 |
atgcttattttaggaaaactatatcatttcataacttgcatggcattggaataaggagccttttaattagtacttataaactatagtcatttttcctatt |
556 |
Q |
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| T |
16663569 |
atgcttattttaggaaaactatatcatttcataacttgcatggcattggaataaggagccttttaattagtacttaaaaactatagtcatttttcctatt |
16663668 |
T |
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| Q |
557 |
aaataatgctagtttgcacatggactcctaaactttttgtatcatgttatatttgcataactatgtctagtgtgttac |
634 |
Q |
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| T |
16663669 |
aaataatgctagtttgcacatggactcctaaactttttgtatcattttatatttgcataactatgtctagtgtgttac |
16663746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 352 - 380
Target Start/End: Original strand, 16663531 - 16663559
Alignment:
| Q |
352 |
aaactcttgtggtctgctctagttaacct |
380 |
Q |
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| T |
16663531 |
aaactcttgtggtctgctctagttaacct |
16663559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 88; Significance: 6e-42; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 157 - 340
Target Start/End: Complemental strand, 30774107 - 30773924
Alignment:
| Q |
157 |
ttttgaaggttggacaaaatttgcagtggttatgttatctaaaattgttacttcttttgacttgtaaaccaacattaccatgccaatcttgtgctaaaag |
256 |
Q |
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| T |
30774107 |
ttttgaaggttggacaaaatttgctgtgaccatgttatctaagattgtgactgttcctgacttgtaaaccaacattattatgccaaccttgtgctaaaag |
30774008 |
T |
|
| Q |
257 |
actgtaaccataatttgggcactcttgttaccttttcagttaattttgattttatttgattggcttaaaagtttatgtgattag |
340 |
Q |
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| T |
30774007 |
attgtaaccatgacttgggcgctcatgttaccatttcagttaattttgattttatttgattggtatacaagtttctttgattag |
30773924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 88
Target Start/End: Original strand, 8586849 - 8586926
Alignment:
| Q |
11 |
tagatgttcttgaggattatctgaaggaacttgagagtatgttggatcaccttgtaatcaagaatgtctagttttctt |
88 |
Q |
| |
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|||||||||||| |||| |||||||||| |||||||| |||||||| ||||| | |||||| || ||||||||||| |
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| T |
8586849 |
tagatgttcttgtggatcatctgaaggagcttgagagcatgttggaagaccttttggtcaagagtggctagttttctt |
8586926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 5 - 53
Target Start/End: Original strand, 27849288 - 27849336
Alignment:
| Q |
5 |
atgaagtagatgttcttgaggattatctgaaggaacttgagagtatgtt |
53 |
Q |
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||||||||||||||||||||||| || || |||| ||||| |||||||| |
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| T |
27849288 |
atgaagtagatgttcttgaggatcatttggaggatcttgaaagtatgtt |
27849336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 85
Target Start/End: Complemental strand, 15594067 - 15593986
Alignment:
| Q |
4 |
aatgaagtagatgttcttgaggattatctgaaggaacttgagagtatgttggatcaccttgtaatcaagaatgtctagtttt |
85 |
Q |
| |
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|||||||||||||||||||||| | || ||||||| || ||||| ||||| || |||||||| |||||| || |||||||| |
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| T |
15594067 |
aatgaagtagatgttcttgagggtaatttgaaggagctcgagagcatgttcgaaaaccttgtagtcaagactggctagtttt |
15593986 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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