View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8111_low_4 (Length: 537)
Name: NF8111_low_4
Description: NF8111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8111_low_4 |
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| [»] scaffold0003 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 458; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 8 - 519
Target Start/End: Complemental strand, 11613045 - 11612537
Alignment:
| Q |
8 |
aatgttcggtcctaagcaaaaggaaatctgctgagagtctcgttagatgagatacgttctgaaaatgactttctaagcgggaagtatccctaacaataga |
107 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |
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| T |
11613045 |
aatgttcggtcctaagcaaaaggaaatctgttgagagtctcgttagatgagatacgttctgaaaatgactttctaagcgggaagtgtccctaaccataga |
11612946 |
T |
|
| Q |
108 |
gaactgttccgaaagggttaagctagattcaacccaaattctaagaattgtaatagatgtttaatttctatttattatgcttgataatataaagagtaat |
207 |
Q |
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|||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11612945 |
gaactgtttcgaaagggttaagctagattcaacccatattctaagaattgtaatagatgtttaatttctatttattatgcttgataatataaagagtaat |
11612846 |
T |
|
| Q |
208 |
ataaagccatcttagttcctctgtacatggaaatagattaaggatcgtaacaatcatgcccagatgtctttcaaaattcatccattcaggactacattag |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |||||||| |
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| T |
11612845 |
ataaagccatcttagttcctctgtacatggaaatagattaaggatcataacaatcatgcccggatgtctttcaaaattcatccattcaggattacattag |
11612746 |
T |
|
| Q |
308 |
aataacataggctttcatgtcattggatacatcaaaggttttagttgccgccgccactcagtgtttgaacaatggtgttgtgccatgggtctgaaaggtg |
407 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11612745 |
aataacataggctttcatgtcattggatacatcaaagattttagtt---gctgccactcagtgtttgaacaatggtgttgtgccatgggtctgaaaggtg |
11612649 |
T |
|
| Q |
408 |
ctgcaagaggttatcaaatggtccttttcctgtcacattgtgctgaatgataaatcccaagaatgccaacattgccaatctccctgcaaacatttgaaat |
507 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11612648 |
ctgcaagaggttatcaaatggtccttttcctgtcacattgtgctgaatgataaatcccaagaatgccaacattgccaatctccctgcaaacatttgaaat |
11612549 |
T |
|
| Q |
508 |
acacaagtttaa |
519 |
Q |
| |
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|||||||||||| |
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| T |
11612548 |
acacaagtttaa |
11612537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 220 - 488
Target Start/End: Original strand, 14454790 - 14455055
Alignment:
| Q |
220 |
tagttcctctgtacatggaaatagattaaggatcgtaacaatcatgcccagatgtctttcaaaattcatccattcaggactacattagaataacataggc |
319 |
Q |
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|||||| |||||||||||||||||||||| |||| |||||||||||| ||||| |||||||||||||||||||||| || |||||||||||||||||||| |
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| T |
14454790 |
tagttcttctgtacatggaaatagattaatgatcttaacaatcatgctcagatatctttcaaaattcatccattcatgattacattagaataacataggc |
14454889 |
T |
|
| Q |
320 |
tttcatgtcattggatacatcaaaggttttagttgccgccgccactcagtgtttgaacaatggtgttgtgccatgggtctgaaaggtgctgcaagaggtt |
419 |
Q |
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||||| ||||||||||||| |||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
14454890 |
tttcaggtcattggatacaacaaacattttagttgccg---ccactcagtgtttgaacaatggtgttgtgccatgggtctgaaaggtgctccaagaggtt |
14454986 |
T |
|
| Q |
420 |
atcaaatggtccttttcctgtcacattgtgctgaatgataaatcccaagaatgccaacattgccaatct |
488 |
Q |
| |
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| T |
14454987 |
atcaaatcgtccttttcctgtgacattgtgctgactgataaatcccaagaatgccaacattgccaatct |
14455055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 191; Significance: 1e-103; HSPs: 2)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 218 - 482
Target Start/End: Original strand, 40654 - 40915
Alignment:
| Q |
218 |
cttagttcctctgtacatggaaatagattaaggatcgtaacaatcatgcccagatgtctttcaaaattcatccattcaggactacattagaataacatag |
317 |
Q |
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||||||||||||||||||||||||| |||||||||| |||||||||||| ||||| |||||||||||||||||||||| || |||||||||||||||||| |
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| T |
40654 |
cttagttcctctgtacatggaaataaattaaggatcttaacaatcatgctcagatatctttcaaaattcatccattcatgattacattagaataacatag |
40753 |
T |
|
| Q |
318 |
gctttcatgtcattggatacatcaaaggttttagttgccgccgccactcagtgtttgaacaatggtgttgtgccatgggtctgaaaggtgctgcaagagg |
417 |
Q |
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|||||||| ||||| |||||| |||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40754 |
gctttcatatcattagatacaacaaacattttagttgccg---ccactcagtgtttgaacaatggtgttgtgccatgggtctgaaaggtgctgcaagagg |
40850 |
T |
|
| Q |
418 |
ttatcaaatggtccttttcctgtcacattgtgctgaatgataaatcccaagaatgccaacattgc |
482 |
Q |
| |
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||||||||| ||||||||||||| ||| |||||||| |||||||||||||||||||||||||||| |
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| T |
40851 |
ttatcaaatcgtccttttcctgtgacactgtgctgactgataaatcccaagaatgccaacattgc |
40915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 220 - 488
Target Start/End: Original strand, 34023 - 34288
Alignment:
| Q |
220 |
tagttcctctgtacatggaaatagattaaggatcgtaacaatcatgcccagatgtctttcaaaattcatccattcaggactacattagaataacataggc |
319 |
Q |
| |
|
||||||||| ||||||||||||| |||||||||| |||||||||||| ||||| |||||||||||||||||||||| || |||||||||||||||||||| |
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| T |
34023 |
tagttcctccgtacatggaaataaattaaggatcttaacaatcatgctcagatatctttcaaaattcatccattcatgattacattagaataacataggc |
34122 |
T |
|
| Q |
320 |
tttcatgtcattggatacatcaaaggttttagttgccgccgccactcagtgtttgaacaatggtgttgtgccatgggtctgaaaggtgctgcaagaggtt |
419 |
Q |
| |
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||||||||||||||||||| |||| |||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
34123 |
tttcatgtcattggatacaacaaacattttagttgccg---ccactcagtgtttgaacaatgatgttgtgccatgggtctgaaaggtgctgcaagaggtt |
34219 |
T |
|
| Q |
420 |
atcaaatggtccttttcctgtcacattgtgctgaatgataaatcccaagaatgccaacattgccaatct |
488 |
Q |
| |
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||||||| |||||||||||| || ||||||||| |||||||||||||||||||||||| ||||||||| |
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| T |
34220 |
atcaaatcgtccttttcctgcaactttgtgctgactgataaatcccaagaatgccaacaatgccaatct |
34288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 191; Significance: 1e-103; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 218 - 482
Target Start/End: Complemental strand, 27446704 - 27446443
Alignment:
| Q |
218 |
cttagttcctctgtacatggaaatagattaaggatcgtaacaatcatgcccagatgtctttcaaaattcatccattcaggactacattagaataacatag |
317 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||| |||||||||||| ||||| |||||||||||||||||||||| || |||||||||||||||||| |
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| T |
27446704 |
cttagttcctctgtacatggaaataaattaaggatcttaacaatcatgctcagatatctttcaaaattcatccattcatgattacattagaataacatag |
27446605 |
T |
|
| Q |
318 |
gctttcatgtcattggatacatcaaaggttttagttgccgccgccactcagtgtttgaacaatggtgttgtgccatgggtctgaaaggtgctgcaagagg |
417 |
Q |
| |
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|||||||| ||||| |||||| |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27446604 |
gctttcatatcattagatacaacaaacattttagttgccgcc---actcagtgtttgaacaatggtgttgtgccatgggtctgaaaggtgctgcaagagg |
27446508 |
T |
|
| Q |
418 |
ttatcaaatggtccttttcctgtcacattgtgctgaatgataaatcccaagaatgccaacattgc |
482 |
Q |
| |
|
||||||||| ||||||||||||| ||| |||||||| |||||||||||||||||||||||||||| |
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|
| T |
27446507 |
ttatcaaatcgtccttttcctgtgacactgtgctgactgataaatcccaagaatgccaacattgc |
27446443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 218 - 488
Target Start/End: Complemental strand, 13764432 - 13764165
Alignment:
| Q |
218 |
cttagttcctctgtacatggaaatagattaaggatcgtaacaatcatgcccagatgtctttcaaaattcatccattcaggactacattagaataacatag |
317 |
Q |
| |
|
|||| |||||||||||||||||||| ||| |||||| |||||||||||| ||||| |||||||||||||||||||||| || |||||||||||||||||| |
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| T |
13764432 |
cttaattcctctgtacatggaaataaattcaggatcttaacaatcatgctcagatatctttcaaaattcatccattcatgattacattagaataacatag |
13764333 |
T |
|
| Q |
318 |
gctttcatgtcattggatacatcaaaggttttagttgccgccgccactcagtgtttgaacaatggtgttgtgccatgggtctgaaaggtgctgcaagagg |
417 |
Q |
| |
|
||||||||||||||||||||| |||| ||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
13764332 |
gctttcatgtcattggatacaacaaacactttagttgccgcc---actcagtgtttgaacaatggtgttttgccatgggtctgaaaggtgctgcaagagg |
13764236 |
T |
|
| Q |
418 |
ttatcaaatggtccttttcctgtcacattgtgctgaatgataaatcccaagaatgccaacattgccaatct |
488 |
Q |
| |
|
||||||||| ||||||||||||| |||||||||||| |||||||||||||||||| ||||||||||||||| |
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| T |
13764235 |
ttatcaaatcgtccttttcctgtgacattgtgctgactgataaatcccaagaatgtcaacattgccaatct |
13764165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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