View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8111_low_5 (Length: 533)
Name: NF8111_low_5
Description: NF8111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8111_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 388; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 28 - 517
Target Start/End: Complemental strand, 55141131 - 55140646
Alignment:
| Q |
28 |
agatcaaaaatgttggtgacgtggccgctaaaacttgagcggtggcagtaggtattactaatagccgtaaaggtagagttnnnnnnnnnnnnnnnnnnnn |
127 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55141131 |
agatcaaaaatgttggtgacgtggccgctaaaacttgagcggtggcagtaggtattactaatagccgtaaaggtagagttgagagagagag--------- |
55141041 |
T |
|
| Q |
128 |
ncaattcattcattaatgctgggagaaacattttgaatactgtgaagtgtgaatccggttcggatttaagaagaagcgtccattaattt-aatttatgct |
226 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
55141040 |
-caattcattcattaatgctgggagaaacattttgaattctgtgaagtgtgaatccggttcggatttaagaagaagcgtccattaattttaatttatgct |
55140942 |
T |
|
| Q |
227 |
gaaacattttctgcttttccaactacacatcacatgttgagttccacactacttgttgcgtcctgctagctagctagaaagattttgtgatgagttagag |
326 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
55140941 |
gaaacattttctgcttttccaactacacatcacatgttgagttccacactacttgttgcgtcctgctagctagctagaaagattttttgatgagttagag |
55140842 |
T |
|
| Q |
327 |
gtgataagcggcaagtaagcttatcaaagtccaaaggctatgattttaatttcttttaatataaccaaaactatatttatttattattttgggtacaaat |
426 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55140841 |
gtgataagcggcaagtaagcctatcaaagtccaaaggctatgattttaatttcttttaatataaccaaaactatatttatttattattttgggtacaaat |
55140742 |
T |
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| Q |
427 |
ataaccatacctatattcctttcaaaaataacca-----taactatattttttggtgctaatggatttgtttttgtgctgtataaaccatactaat |
517 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55140741 |
ataaccatacctatattcctttcaaaaataaccataacataactatattttttggtgctaatggatttgtttttgtgctgtataaaccatactaat |
55140646 |
T |
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