View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8111_low_6 (Length: 524)
Name: NF8111_low_6
Description: NF8111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8111_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 458; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 13 - 506
Target Start/End: Complemental strand, 32396414 - 32395921
Alignment:
| Q |
13 |
aatattccgatcctcaaacggcctatccaaaatcccaggtgtatcaatgacttgatacctcaaatacttgtaatccgtatgacccacaaacagcgacttc |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32396414 |
aatattccgatcctcaaacggcctatccaaaatcccaggtgtatcaatgacttgatacctcaaatacttgtaatccgtatgacccacaaacagcgacttc |
32396315 |
T |
|
| Q |
113 |
gtggtaaacgcatacggctgaacttcaacatcagccctagtaatcttgttgataaaggaactcttccccacattaggatacccacaaatcaaaatagtcc |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
32396314 |
gtggtaaacgcatacggctgaacttcaacatcagccctagtaatcttgttgataaatgaactcttccccacatttggatacccacaaatcaaaatagtcc |
32396215 |
T |
|
| Q |
213 |
tggtattgggatcaatagaaggaagcctagccatatgctgcctaacctgttccaaatacgccaaactcggcccaatcctcttaagcacggtacacatcct |
312 |
Q |
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||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
32396214 |
tggtatttggatcaattgaaggaagcctagccatatgctgcctaacctgttccaaatacgccaaactcggcccaatcctcttaagcacagtacacatcct |
32396115 |
T |
|
| Q |
313 |
cccaagagcagcaaccttcaagcacttacaacgatacaacgaatcaccatacttgagcaacttaacataatctttagcaatcttaccaattagattccta |
412 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
32396114 |
cccaagagcagcaaccttcaagcacttacatcgatacaacgaatcaccttactttagcaacttaacataatctttagcaatcttaccaataagattccta |
32396015 |
T |
|
| Q |
413 |
gcagtattaatctgaccaagtgcaagcttgtaatgatccttgttatagagcacatgaagcagatcaccataaaaaggatgaatgtccccaagac |
506 |
Q |
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| T |
32396014 |
gcagtattaatctgaccaagtgcaagcttgtaatgatccttgttatagagcacatgaagcagatcaccataaaaaggatgaatgtccccaagac |
32395921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 434; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 13 - 506
Target Start/End: Complemental strand, 6129768 - 6129275
Alignment:
| Q |
13 |
aatattccgatcctcaaacggcctatccaaaatcccaggtgtatcaatgacttgatacctcaaatacttgtaatccgtatgacccacaaacagcgacttc |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||| |
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| T |
6129768 |
aatattccgatcctcaaacggcctatccaaaatcccaggcgtatcaatcacttgatatctcaaatacttataatccgtatgacccacaaacagcgactta |
6129669 |
T |
|
| Q |
113 |
gtggtaaacgcatacggctgaacttcaacatcagccctagtaatcttgttgataaaggaactcttccccacattaggatacccacaaatcaaaatagtcc |
212 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
6129668 |
gtagtaaacgcatacggctgaacttcaacatcagccctagtaatcttgttgataaaagaactcttccccacattgggatacccacaaatcaaaatagtcc |
6129569 |
T |
|
| Q |
213 |
tggtattgggatcaatagaaggaagcctagccatatgctgcctaacctgttccaaatacgccaaactcggcccaatcctcttaagcacggtacacatcct |
312 |
Q |
| |
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||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
6129568 |
tggtatttggatcaattgaaggaagcctagccatatgctgcctaacctgttccaaatacgccaaactcggcccaatcctcttaagcacagtacacatcct |
6129469 |
T |
|
| Q |
313 |
cccaagagcagcaaccttcaagcacttacaacgatacaacgaatcaccatacttgagcaacttaacataatctttagcaatcttaccaattagattccta |
412 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
6129468 |
cccaagagcagcaaccttcaagcacttacaccgatacaacgaatcaccgtacttaagcaacttaacataatctttagcaatcttaccaataagattccta |
6129369 |
T |
|
| Q |
413 |
gcagtattaatctgaccaagtgcaagcttgtaatgatccttgttatagagcacatgaagcagatcaccataaaaaggatgaatgtccccaagac |
506 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6129368 |
gcagtattaatctgaccaagtgcaagcttgtaatgatccttgttatagagcacatgaagcagatcaccataaaaaggatgaatgtccccaagac |
6129275 |
T |
|
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