View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8111_low_8 (Length: 357)
Name: NF8111_low_8
Description: NF8111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8111_low_8 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 1 - 357
Target Start/End: Original strand, 2813739 - 2814095
Alignment:
| Q |
1 |
gtgtctgctttaaatgcttcagaaactccaagaattggatcaggaggagccattggtataccctcaaaccgagaaacattagtcgcaacagccatacaga |
100 |
Q |
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| T |
2813739 |
gtgtctgctttaaatgcttcggaaactccaagaattggatcaggaggagccattggtataccctcaaaccgagaaacattagtcgcaacagccatacaga |
2813838 |
T |
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| Q |
101 |
tccgaccagatgactgaataaacaaaatcaacagacaaaagatcagaacagacacaatgaaattgatcagggtagtaggaccacctcctaaatcctaatt |
200 |
Q |
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| T |
2813839 |
tccgaccagatgactgaataaacaaaatcaacagacaaaagatcagaacagacacaatgaaattgatcagggtagtaggaccacctcctaaatcctaatt |
2813938 |
T |
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| Q |
201 |
aatgaacttcaattgcaattttaaaactatactttgatccattatgaacacaaaaataagaacagagttaacaagttaacatcaggaattgaattacagt |
300 |
Q |
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| T |
2813939 |
aatcaacttcaattgcaattttaaaactatactttgatccattatgaacacaaaaataagaacagagttaacaagttaacatcaggaattgaattacagt |
2814038 |
T |
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| Q |
301 |
tctaatttcttatttttgtcttaaccctccggtttccagaggaaactggtaatctga |
357 |
Q |
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| T |
2814039 |
tctaatttcttatttttgtcttaaccctccggtttccagaggaaactggtaatctga |
2814095 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 34 - 96
Target Start/End: Complemental strand, 26375835 - 26375773
Alignment:
| Q |
34 |
attggatcaggaggagccattggtataccctcaaaccgagaaacattagtcgcaacagccata |
96 |
Q |
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| T |
26375835 |
attggatcaggaggagccatgggtatatcctctaactgagaaacactaatcgcaacagccata |
26375773 |
T |
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