View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8112_high_1 (Length: 285)
Name: NF8112_high_1
Description: NF8112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8112_high_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 278
Target Start/End: Original strand, 29144521 - 29144798
Alignment:
| Q |
1 |
tctttatatcagaaccttctctctgtgctagctacctatagattcttttaagaagcactaaatttctttgtttttgttatccaaaagatgaaaagaatgg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29144521 |
tctttatatcagaaccttctctctgtgctagctacctatagattcttttaagaagcactaaatttctttgtttttgttatccaaaagatgaaaagaatgg |
29144620 |
T |
|
| Q |
101 |
atatcttctgtgcttcacaagcctcaacagcaatatgtcttagcatggaacaagcttcatgctcctcttcaaataccattcaacttggaggcaaagtcat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29144621 |
atatcttctgtgcttcacaagcctcaacagcaatatgtcttagcatggaacaagcttcatgctcctcttcaaataccattcaacttggaggcaaagtcat |
29144720 |
T |
|
| Q |
201 |
tgatcgccacaaccctattatcaatgattcaagaagaagcacttccaagactatcactgctccatgttcttcttctca |
278 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29144721 |
tgatcgccacaaccctattatcaatgattcaagaagaagcacttccaagactatcactgctccatgttcttcttctca |
29144798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 80 - 142
Target Start/End: Original strand, 40453277 - 40453339
Alignment:
| Q |
80 |
tccaaaagatgaaaagaatggatatcttctgtgcttcacaagcctcaacagcaatatgtctta |
142 |
Q |
| |
|
||||||| |||||| | || || ||||||||||| ||||||||||||||||| |||||||||| |
|
|
| T |
40453277 |
tccaaaaaatgaaaggcattgaaatcttctgtgcatcacaagcctcaacagccatatgtctta |
40453339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University