View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8112_high_2 (Length: 244)
Name: NF8112_high_2
Description: NF8112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8112_high_2 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 218; Significance: 1e-120; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 8 - 229
Target Start/End: Original strand, 9787869 - 9788090
Alignment:
| Q |
8 |
tagcagagagaaaagcagtggttatccatacataaccagttcccatcattccaagattcttcgcgacactaaacacttttgggccaccaatagtgttggc |
107 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9787869 |
tagcagaaagaaaagcagtggttatccatacataaccagttcccatcattccaagattcttcgcgacactaaacacttttgggccaccaatagtgttggc |
9787968 |
T |
|
| Q |
108 |
gtgaactactataactcttgattcagcaagagccacctgaactagcacattagttatcacctaatgcaccaattccattccttccattatcatcatcaat |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9787969 |
gtgaactactataactcttgattcagcaagagccacctgaactagcacattagttatcacctaatgcaccaattccattccttccattatcatcatcaat |
9788068 |
T |
|
| Q |
208 |
atatacagcaacggcttctttc |
229 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
9788069 |
atatacagcaacggcttctttc |
9788090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 8 - 165
Target Start/End: Complemental strand, 9801584 - 9801427
Alignment:
| Q |
8 |
tagcagagagaaaagcagtggttatccatacataaccagttcccatcattccaagattcttcgcgacactaaacacttttgggccaccaatagtgttggc |
107 |
Q |
| |
|
||||||| ||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||| ||||| |||||||||||||| |
|
|
| T |
9801584 |
tagcagaaagaaaagcagtggctatccatacataaccagttcctatcattccaagattcttcgcaacactgaacactttcgggcccccaatagtgttggc |
9801485 |
T |
|
| Q |
108 |
gtgaactactataactcttgattcagcaagagccacctgaactagcacattagttatc |
165 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
9801484 |
gtgaactactataactcttgattcagcaagagccacctgaactagcacatttgttatc |
9801427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 161 - 229
Target Start/End: Complemental strand, 9801360 - 9801292
Alignment:
| Q |
161 |
ttatcacctaatgcaccaattccattccttccattatcatcatcaatatatacagcaacggcttctttc |
229 |
Q |
| |
|
||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||| | | |||||||| |
|
|
| T |
9801360 |
ttatcgcctaatgcaccaattccgttccttccattatcatcatcaatgtatacagctatgacttctttc |
9801292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University