View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8113_high_2 (Length: 490)
Name: NF8113_high_2
Description: NF8113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8113_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 148; Significance: 7e-78; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 250 - 409
Target Start/End: Original strand, 1327811 - 1327970
Alignment:
| Q |
250 |
aacaataattatccatttgggaaacttaattacatccctctggagctctctgagaaggtaggatctgcctttcctatttgcttttccatcatattcacat |
349 |
Q |
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| T |
1327811 |
aacaataattatccatttgggaaacttaattacatccctctggagctctctgagaaggtaggatctgcctttcctattttcttttccatcatattcacat |
1327910 |
T |
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| Q |
350 |
ttgtatcttcctctatctaaggcatagatgctatgaagcacggatgcggacacgaacacc |
409 |
Q |
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| T |
1327911 |
ttgtatcttcctctatctaaggcataggtgctatgaagcatggatgcggacacgaacacc |
1327970 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 18 - 182
Target Start/End: Original strand, 1327584 - 1327743
Alignment:
| Q |
18 |
tttctaaagggtaatacatgtatcactacatctcctttaatttggttcccttgttttcatgctacaaaaacggaccatgcttaactcaggttctaatgct |
117 |
Q |
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| T |
1327584 |
tttctaaagggtaatacatgtatcactacatctccttt-----ggttcccttgttttcatgctacaaaaacggaccatgcttaactcaggttctaatgct |
1327678 |
T |
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| Q |
118 |
ttcccattacaggaacaacagaagaagaaaggaaagagggaacacaagatagatgggaaaaataa |
182 |
Q |
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| T |
1327679 |
ttcccattacaggaacaacagaagaagaaaggaaagagtgaacacaagatagataggaaaaataa |
1327743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 417 - 473
Target Start/End: Original strand, 1079777 - 1079833
Alignment:
| Q |
417 |
atatctgaaaggtggacatcttatccatccacttgtcacttatggaaatgttgtatc |
473 |
Q |
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| T |
1079777 |
atatctgaaaggtggacttcttatccatccgcttgtcacttttggaaatgttgtatc |
1079833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 425 - 474
Target Start/End: Complemental strand, 54043289 - 54043240
Alignment:
| Q |
425 |
aaggtggacatcttatccatccacttgtcacttatggaaatgttgtatct |
474 |
Q |
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| T |
54043289 |
aaggtgtacatcttatccatcagcttgtcacttttggaaatgttgtatct |
54043240 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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