View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8113_low_1 (Length: 979)
Name: NF8113_low_1
Description: NF8113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8113_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 457; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 94 - 659
Target Start/End: Original strand, 40315018 - 40315582
Alignment:
| Q |
94 |
acaacatttgatactttctctaacaacagaagaatgccgacgtgctccttaagtttgttttatgaactttccctttgttccattgcatctattttcaaga |
193 |
Q |
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| T |
40315018 |
acaacatttgatactttctctaacaacagaagaatgccgacgtgctccttaagtttgttttatgaactttccctt-gttccattgcatctattttcaaga |
40315116 |
T |
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| Q |
194 |
ttcatattcccttcatttctattatatttaggttagctgggtttcgaaggatcattgacgtcagacaagctttaaagttcaatgaactcagttagttata |
293 |
Q |
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| T |
40315117 |
ttcatattcccttcatttctattatatttaggttagcttggtttcgaagtatcattgacgtcagacaagctttaaagttcaatgaactcagttagttata |
40315216 |
T |
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| Q |
294 |
aataaccatccatcaaaagaatctttacgttaacaatgagaattaaatcaaaggatgaattaactccttgtcaacttaaactttcatcgactattcattt |
393 |
Q |
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| T |
40315217 |
aataaccatccatcaaaaaaatctttaccttaacaatgagaattaaatccaagggtgaattaactccttgtcaacttaaactttcatcaactattcattt |
40315316 |
T |
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| Q |
394 |
gttaaatgttattgacaaaaatttatcagcaaaattctttctaacctctatctttcattctttctaacctttatccctcttctctcaaaaatccatacct |
493 |
Q |
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| T |
40315317 |
gttaactgttaatgaaaaaaatttatcagcaaaattctttctaacctctatctttcattctttctaacctttatccctcttctctcaaaaatccatacct |
40315416 |
T |
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| Q |
494 |
ttgatgcgaattcagatcctctaatgttgaaaaagattgaaggaataatgtgataatataagcccttaaaatacaaaaaggatataattttgaaatttnn |
593 |
Q |
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| T |
40315417 |
ttgatgcgaattcagatcctctaatgttgaaaaagattgaaggaataatgtgataatatatgcccttaaaatacaaaaaggatataattttgaaatttaa |
40315516 |
T |
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| Q |
594 |
nnnnnnnnnnnnngtgaaatgttagttaagggttgagattgaaaaattgaaaaatcgtggagaatc |
659 |
Q |
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| T |
40315517 |
aaagaaaaaaaaagtgaaatgttagttaagggttgagattggaaaattgagaaatcgtgaagaatc |
40315582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 717 - 961
Target Start/End: Original strand, 40315640 - 40315884
Alignment:
| Q |
717 |
caaaaactcgagagggtctgttgtcgttcaaaaacccgaacgagtatgattaagttaatatgaaatggtttggttgctaatgtatttgattctctgatgc |
816 |
Q |
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| T |
40315640 |
caaaaactcgagagggtctgttgtcgttcaaaaacccgaacgagtatgattaagttaatatgaaatggtttggttgctaatgtatttgattctctaatgc |
40315739 |
T |
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| Q |
817 |
tccacatctgcgggtttcaaggtgtcatgtttacctccttcaccgctggttatccatgtcagtccttgtaactgttcttagaatgttaatgctcgaaata |
916 |
Q |
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| T |
40315740 |
tccacatctgcgggtttcaaggtgtcatgtttacctcctttactgctggttatccatgtcagtccttgtaactgttcttagaatgttaatgctcgaaata |
40315839 |
T |
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| Q |
917 |
acttttatgcttgcttcttcgtctaaggagttgttgacggttgat |
961 |
Q |
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| T |
40315840 |
acttttatgcttgcttcttcgtctaaggaattgttgacggttgat |
40315884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 19 - 81
Target Start/End: Original strand, 40314895 - 40314957
Alignment:
| Q |
19 |
actatacagtcacattgttcctaataagtatctcattcaagaatctattttacccatgtattg |
81 |
Q |
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| T |
40314895 |
actatacagtcacattgttcctaataagtatctcattcaagaatctattttacccatgtattg |
40314957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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