View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8113_low_15 (Length: 224)
Name: NF8113_low_15
Description: NF8113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8113_low_15 |
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Alignment Details
Target: chr7 (Bit Score: 108; Significance: 2e-54; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 94 - 209
Target Start/End: Original strand, 40315018 - 40315132
Alignment:
| Q |
94 |
acaacatttgatactttctctaacaacagaagaatgccgacgtgctccttaagtttgttttatgaactttccctttgttccattgcatctattttcaaga |
193 |
Q |
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| T |
40315018 |
acaacatttgatactttctctaacaacagaagaatgccgacgtgctccttaagtttgttttatgaactttccc-ttgttccattgcatctattttcaaga |
40315116 |
T |
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| Q |
194 |
ttcatattcccttcat |
209 |
Q |
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|||||||||||||||| |
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| T |
40315117 |
ttcatattcccttcat |
40315132 |
T |
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Target: chr7; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 19 - 81
Target Start/End: Original strand, 40314895 - 40314957
Alignment:
| Q |
19 |
actatacagtcacattgttcctaataagtatctcattcaagaatctattttacccatgtattg |
81 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40314895 |
actatacagtcacattgttcctaataagtatctcattcaagaatctattttacccatgtattg |
40314957 |
T |
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