View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8113_low_16 (Length: 209)
Name: NF8113_low_16
Description: NF8113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8113_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 163; Significance: 3e-87; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 20 - 198
Target Start/End: Original strand, 43756741 - 43756919
Alignment:
| Q |
20 |
gtctgtgtatagtacgctaagggtggagatcgaaacctcgatctctttattacttcactttgcaattttttcatcaagtcaccaagtcaactttatatcc |
119 |
Q |
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| T |
43756741 |
gtctgtgtatagtacgctaagggtggagatcgaaacttcaatctctttattacttcactttgcaattttttcatcaagtcaccaagtcaactttatatcc |
43756840 |
T |
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| Q |
120 |
ccgattaatgtgttatattggtgggagagttggacacctgacatttttatgattcatacctctataacattcttctcac |
198 |
Q |
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| T |
43756841 |
ccaattaatgtgttatattggtgggagagttggacacctgacatttttatgattcatacctctataacattcttatcac |
43756919 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 129; Significance: 6e-67; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 20 - 192
Target Start/End: Original strand, 13333821 - 13333993
Alignment:
| Q |
20 |
gtctgtgtatagtacgctaagggtggagatcgaaacctcgatctctttattacttcactttgcaattttttcatcaagtcaccaagtcaactttatatcc |
119 |
Q |
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|||| |||||| || |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | |||||| ||||| ||||||||| |
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| T |
13333821 |
gtctttgtataatatgctaagggtggagatcgaaacctcaatctctttattacttcactttgcaattttttcattgaatcaccatgtcaagtttatatcc |
13333920 |
T |
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| Q |
120 |
ccgattaatgtgttatattggtgggagagttggacacctgacatttttatgattcatacctctataacattct |
192 |
Q |
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| T |
13333921 |
ccgattaatgtgttatattggtgggagagttggacacctgacatttttatctttcatacctctataacattct |
13333993 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 20 - 187
Target Start/End: Complemental strand, 13334503 - 13334336
Alignment:
| Q |
20 |
gtctgtgtatagtacgctaagggtggagatcgaaacctcgatctctttattacttcactttgcaattttttcatcaagtcaccaagtcaactttatatcc |
119 |
Q |
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|||||||||||||| ||||||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||| || ||| || || ||||||||| |
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| T |
13334503 |
gtctgtgtatagtatgctaagggtggagattgaaacatcgatctctttattacttcactttgctattttttcatcaaatcgccatgtaaagtttatatcc |
13334404 |
T |
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| Q |
120 |
ccgattaatgtgttatattggtgggagagttggacacctgacatttttatgattcatacctctataac |
187 |
Q |
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|| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| |
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| T |
13334403 |
ccaattaatgtgttatattggtgggagagttggatacctgacatttttatgattcatacatctataac |
13334336 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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