View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8113_low_2 (Length: 582)
Name: NF8113_low_2
Description: NF8113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8113_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 463; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 6 - 551
Target Start/End: Original strand, 27694068 - 27694625
Alignment:
| Q |
6 |
gtttggtgttcgccatagttgaagtacactaccgatttgttgttttcacatattacttggaaactgggattacacccaatccc---tccaaatttaacat |
102 |
Q |
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| T |
27694068 |
gtttgatgttcgccatagttgaagtacactaccgatttgttgttttcacatattacttggaaactgggattacacccaatcccatctccaaatttaacat |
27694167 |
T |
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| Q |
103 |
cgttgaatatcgttccgcatggcctttgaatgaagcttgtatcatataaggaaagcacagagatcaatattaaaatggcagcgaaaatgggtagtacccc |
202 |
Q |
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| T |
27694168 |
cgttgaatatcgttccgcatgggctttgaatgaagcttgtatcatagaaggaaatcacagagatcaatattaaaatggcagcgaaaatgggtagtacccc |
27694267 |
T |
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| Q |
203 |
gtacatcatagccattttgattttttggggttggttgggggatctgctcgactcagtcagtcagtcatggctagctacctggactaattatctcacttgg |
302 |
Q |
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| T |
27694268 |
gtacatcatagccattttgattttttggggttggttgggggatctgctcgactcagtcagtcagtcatg----gctacctggactaattatctcacttgg |
27694363 |
T |
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| Q |
303 |
tgctgacttcaagtcaa-------------ccaataatgcctcatcactcattttttatccttttaaacccgcctgggcccacggtttggggacaaaaga |
389 |
Q |
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| T |
27694364 |
tgctgacttcaagtcaaccacatgaaccgcccaataatgcctcatcactcattttttatccttttaaacccgcctgggcccacggtttagggacaaaaga |
27694463 |
T |
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| Q |
390 |
tttttagagtttggacaagaattaagaaataagtatctagtaactccgtaatccgtattaatcacgtatctatttaaaacaaaaacattaaatgtatcta |
489 |
Q |
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| T |
27694464 |
tttttagagtttggacaagaattaagaaataagtatctagtaactccgtaatccgtattaatcacgtatatatttaaaacaaaaacattaaatgtatcta |
27694563 |
T |
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| Q |
490 |
gtaattagcgatgacacttatataatatttagtgatctaatttgttacaaaaagaagtgtga |
551 |
Q |
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| T |
27694564 |
gtaattagcgatgacacttatataatatttagtgatctaatttgttacaaaaagaagtgtga |
27694625 |
T |
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