View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8113_low_5 (Length: 466)
Name: NF8113_low_5
Description: NF8113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8113_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 156; Significance: 1e-82; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 253 - 440
Target Start/End: Original strand, 43970666 - 43970852
Alignment:
| Q |
253 |
ggaaatgccaacgtcattaagaaattgacattaattgtttaaggagaaaggtataacagatcatgttgatttgtacatagcattatagcaatgaaattta |
352 |
Q |
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| T |
43970666 |
ggaaatgccaccgtcattaagaaattgacattaattgtgtaaggagaaaggtataacagatcatgctgatttgtacatagcattatagcaatgaaattta |
43970765 |
T |
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| Q |
353 |
tgtttgtatggtggaaatttaacagatttctattttgagattttgaattggagttgctggtctattatatgttttttaatcgcactca |
440 |
Q |
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| T |
43970766 |
tgtttgtatggtagaaatttaacagatttctattttgagattttgaattggagttgct-gtctattatattttttttaatctcactca |
43970852 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 20 - 161
Target Start/End: Original strand, 43970434 - 43970570
Alignment:
| Q |
20 |
atcattccattctggattcttcgagggataaatgttgccaaaatttcaatgatgcatgctttcatgctcagtttttttcatggcatccnnnnnnnncttc |
119 |
Q |
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| T |
43970434 |
atcattccattctggattctttc-gggataaatgttgccgaaatttcaatgatgcatgctttcatgctcag-ttttttcatggcttcctctttt---ttc |
43970528 |
T |
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| Q |
120 |
ttctcgttacagtgtaagtgcaatgatcaattatacttatca |
161 |
Q |
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| T |
43970529 |
ttttcgttacagtttaagtgcaatgatcaattatatttatca |
43970570 |
T |
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