View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8113_low_6 (Length: 454)
Name: NF8113_low_6
Description: NF8113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8113_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 384; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 13 - 425
Target Start/End: Original strand, 42687173 - 42687589
Alignment:
| Q |
13 |
gagaagaagaattgcaaaatttaaggggagatggaacaggagagcgcaagttacatgaaaggatctacgattacgatgtctacaatgatttaggaaatcc |
112 |
Q |
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| T |
42687173 |
gagaagaagaattgcaaaatttaaggggagatggaacaggagagcgcaagttacatgaaaggatctacgattacgatgtctacaatgatttaggcaatcc |
42687272 |
T |
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| Q |
113 |
agatcacggtgaaagtcttgctcgccctgttcttggagggtctagcacacatccttaccctcgcaggggaaggacaggtcgatatccaacaaggaaaggt |
212 |
Q |
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| T |
42687273 |
agatcacggtgaaagttttgctcgccctgttcttggagggtctagcacacatccttaccctcgcaggggaaggacaggtcgatatccaacaaggaaaggt |
42687372 |
T |
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| Q |
213 |
tagttcaatttttagtaacaaacgtaacaaagtgatgttatagtgtgatactgtgatttgattgagtgtatctataaaaagttttatttggtcggttcat |
312 |
Q |
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| T |
42687373 |
tagttcaatttttagtaacaaacgtaacaaagtgatgttatagtgtgatactgtgatttgattgagtgtatctataaaaagttttatttggtcggttcat |
42687472 |
T |
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| Q |
313 |
agaaattaaactcgtagttgtattttaaaaaataata----tattagttggaagagttcaattttaacttctgcttttgaaaatagctatagctaggcat |
408 |
Q |
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| T |
42687473 |
aggaattaaactcgtagttgtattttaaaaaataatatatttattagttggaagagttcaattttaacttctgcttgtgaaaatagctatagctaggcat |
42687572 |
T |
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| Q |
409 |
ttgtgctatgatcctta |
425 |
Q |
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| T |
42687573 |
ttgtgctatgatcctta |
42687589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 13 - 184
Target Start/End: Complemental strand, 42694484 - 42694313
Alignment:
| Q |
13 |
gagaagaagaattgcaaaatttaaggggagatggaacaggagagcgcaagttacatgaaaggatctacgattacgatgtctacaatgatttaggaaatcc |
112 |
Q |
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|||||||||||||| | |||||||| ||||||||||||||||| ||||| | ||||| ||||| ||||| |||||||||||||||||||||||||| |
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| T |
42694484 |
gagaagaagaattgaacaatttaagaggagatggaacaggagaacgcaaagaatgggaaagaatctatgattatgatgtctacaatgatttaggaaatcc |
42694385 |
T |
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| Q |
113 |
agatcacggtgaaagtcttgctcgccctgttcttggagggtctagcacacatccttaccctcgcaggggaag |
184 |
Q |
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| T |
42694384 |
ggagaaaggtgacaatcatgctcgtcctgttcttggcgggtctgacacatatccttatcctcgtcggggaag |
42694313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 16 - 106
Target Start/End: Complemental strand, 6290597 - 6290507
Alignment:
| Q |
16 |
aagaagaattgcaaaatttaaggggagatggaacaggagagcgcaagttacatgaaaggatctacgattacgatgtctacaatgatttagg |
106 |
Q |
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| T |
6290597 |
aagaagaattgaagactttaagaggagatggaacaggagagcgcaaggaatgggaaagaatatatgattacgatgtctacaatgatttagg |
6290507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 32 - 103
Target Start/End: Complemental strand, 6425363 - 6425292
Alignment:
| Q |
32 |
tttaaggggagatggaacaggagagcgcaagttacatgaaaggatctacgattacgatgtctacaatgattt |
103 |
Q |
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| T |
6425363 |
tttaagaggagatggaaaaggagagcgcaaggaatgggaaaggatctatgattacgatgtctacaatgattt |
6425292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 16 - 103
Target Start/End: Complemental strand, 6353689 - 6353602
Alignment:
| Q |
16 |
aagaagaattgcaaaatttaaggggagatggaacaggagagcgcaagttacatgaaaggatctacgattacgatgtctacaatgattt |
103 |
Q |
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| T |
6353689 |
aagaagaattgaagactttaagaggagatggaactggagagcgcaaggaatgggaaagaatatatgattacgatgtctacaatgattt |
6353602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 129 - 180
Target Start/End: Original strand, 9603196 - 9603247
Alignment:
| Q |
129 |
cttgctcgccctgttcttggagggtctagcacacatccttaccctcgcaggg |
180 |
Q |
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|||||||| || || ||||||||||||||||| |||||||||||||| |||| |
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| T |
9603196 |
cttgctcgtccggtccttggagggtctagcactcatccttaccctcgaaggg |
9603247 |
T |
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