View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8113_low_7 (Length: 347)
Name: NF8113_low_7
Description: NF8113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8113_low_7 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 147; Significance: 2e-77; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 163 - 329
Target Start/End: Complemental strand, 7279074 - 7278908
Alignment:
| Q |
163 |
gataaggatcgctgaaacaatcatgaatttgcttcttaggttggattctgttagagtcttccattgttctgctcttagggacttgagaaagtcgattatc |
262 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7279074 |
gataaggatcgctgaaacaattatgaatttgcttcttaggttggattctgttagagtatttcattgttctgctcttagggacttgagaaagtcgattatc |
7278975 |
T |
|
| Q |
263 |
aaaagggctatagttctgcaagaatttgttgatcaaattcaaatggtgggtcccacagaggaagttg |
329 |
Q |
| |
|
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7278974 |
aaaagggctattgttcttcaagaatttgttgatcaaattcaaatggtgggtcccacagaggaagttg |
7278908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 163 - 329
Target Start/End: Original strand, 7374765 - 7374931
Alignment:
| Q |
163 |
gataaggatcgctgaaacaatcatgaatttgcttcttaggttggattctgttagagtcttccattgttctgctcttagggacttgagaaagtcgattatc |
262 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7374765 |
gataaggatcgctgaaacaattatgaatttgcttcttaggttggattctgttagagtatttcattgttctgctcttagggacttgagaaagtcgattatc |
7374864 |
T |
|
| Q |
263 |
aaaagggctatagttctgcaagaatttgttgatcaaattcaaatggtgggtcccacagaggaagttg |
329 |
Q |
| |
|
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7374865 |
aaaagggctattgttcttcaagaatttgttgatcaaattcaaatggtgggtcccacagaggaagttg |
7374931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 4 - 94
Target Start/End: Complemental strand, 7279233 - 7279143
Alignment:
| Q |
4 |
agccgattcagcaacgaagattgagaaggttgcaagagggtttcttgtgaggacgagtttgaacaagattttgaagatgaaagtggagttg |
94 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
7279233 |
agccaattcagcaacgaagattgagaaggttgcaagagggtttcttgtgaggaagagtttgaacaagatgttgaagatgaaagtggagttg |
7279143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 4 - 94
Target Start/End: Original strand, 7374606 - 7374696
Alignment:
| Q |
4 |
agccgattcagcaacgaagattgagaaggttgcaagagggtttcttgtgaggacgagtttgaacaagattttgaagatgaaagtggagttg |
94 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| || |||||| |
|
|
| T |
7374606 |
agccaattcagcaacgaagattgagaaggttgcaagagggtttcttgtgaggaagagtttgaacaagatgttgaagatgaaggtagagttg |
7374696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 5848013 - 5848103
Alignment:
| Q |
1 |
cagagccgattcagcaacgaagattgagaaggttgcaagagggtttcttgtgaggacgagtttgaacaagattttgaagatgaaagtggag |
91 |
Q |
| |
|
||||||||| ||||||| ||||||||||||| |||||||||| ||||||||||||| ||||||||| ||||| |||||||| || |||||| |
|
|
| T |
5848013 |
cagagccgactcagcaatgaagattgagaagtttgcaagaggttttcttgtgaggaagagtttgaagaagatgttgaagatcaaggtggag |
5848103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 163 - 215
Target Start/End: Original strand, 5848163 - 5848215
Alignment:
| Q |
163 |
gataaggatcgctgaaacaatcatgaatttgcttcttaggttggattctgtta |
215 |
Q |
| |
|
|||||||||| || |||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
5848163 |
gataaggatcactaaaaccatcatgaatttgcttcttaggttggattctgtta |
5848215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University