View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8113_low_9 (Length: 294)
Name: NF8113_low_9
Description: NF8113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8113_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 275
Target Start/End: Complemental strand, 27286178 - 27285903
Alignment:
| Q |
1 |
tctaaggatagttgtataaaacaataaatcaactttgttctaatgaa-gatacttttttctagtaataaaaatgattcatgattcattgcattttgttca |
99 |
Q |
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| T |
27286178 |
tctaaggatagttgtacaaaacaataaatcaactttgttctaatgaaagatactttcttctagtaataaaaatgattcatgattcattgcattttgttca |
27286079 |
T |
|
| Q |
100 |
taatcaattattcaaggaacatagggataacgtatgaaagtcacaggggctaggatatgcataatgtatgtctcctaataattttatgttgggttatgag |
199 |
Q |
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| T |
27286078 |
taatcaattattcaaggaacatagggataacgtatgaaagtcacaggggctaggatatacataatgtatgtctcctaataattttatgttgggttatgag |
27285979 |
T |
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| Q |
200 |
gtcagcatataaaattaaccgaaaataatcggataaagaatttgacaccacatcattatctaaaattttaagacat |
275 |
Q |
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| T |
27285978 |
gtcagcatataaaattaactaaaaataatcggataaagaatttgacaccacatcattatccaaaattttaagacat |
27285903 |
T |
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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 238 - 276
Target Start/End: Complemental strand, 2977426 - 2977388
Alignment:
| Q |
238 |
aatttgacaccacatcattatctaaaattttaagacatt |
276 |
Q |
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| T |
2977426 |
aatttgacaccacatcatcatctaaaatcttaagacatt |
2977388 |
T |
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